BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474809
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56460.2 | Symbols: | HIT zinc finger ;PAPA-1-like conserve... 2239 0.0
> AT1G56460.2 | Symbols: | HIT zinc finger ;PAPA-1-like conserved
region | chr1:21146239-21149805 FORWARD LENGTH=2166
Length=2166
Score = 2239 bits (1212), Expect = 0.0
Identities = 1375/1452 (95%), Gaps = 18/1452 (1%)
Strand=Plus/Plus
Query 347 GAAGTAACCAAGTGAGGCAAGGTGGAGGCCACAGCACTGCATCTACTGAAGGGTTTCTTG 406
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 GAAGTAACCAAGTGAGGCAAGGTGGAGGCCACAGCACTGCATCCACTGAAGGGTTTCTTG 591
Query 407 TCCCTTGT-AAAAGAAAAGACTCCATTGACACAACAGAGCGTCGAGCTGGTTTTGATGAG 465
| ||| || ||||| |||||| | |||||||| ||||| |||||||||||||||||||||
Sbjct 592 TACCTAGTAAAAAG-AAAGACACAATTGACACGACAGAACGTCGAGCTGGTTTTGATGAG 650
Query 466 CATACCATCAAGAAGGTTAAACTCAAACTCGGTGGTTCGTCAAAAACTATAAATGTAGTA 525
||| |||||||||||||||||||||||| |||||||||||||||||||||||| || ||
Sbjct 651 AATATCATCAAGAAGGTTAAACTCAAACTTGGTGGTTCGTCAAAAACTATAAATATAATA 710
Query 526 TCTGCATCTGATGGTGCTTCTGATATTGGGTTGTGTTCGACAAAGTCGTCCCATGCATCA 585
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 711 TCAGCATCCGATGGTGCTTCTGATATTGGATTGTGTTCGACAAAGTCGTCCCATGCATCA 770
Query 586 GATAATGTCTTGGGGATTGGGCAGACTAACCAGGAGATTTCAAACGAGAGATCCACTAAA 645
||| ||| ||||||||||||||||||| ||||||| |||||||||||| |||| ||||||
Sbjct 771 GATGATGCCTTGGGGATTGGGCAGACTTACCAGGAAATTTCAAACGAGCGATCGACTAAA 830
Query 646 GAAAGAGGGACACCGTGGGACACTGCAAGCAAAGCAGATTCATGTAATGATACGCGAGTT 705
|||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 831 CTAAGAGGGACACCGTTGGACACTGCAAGCAAATCAGATTCATGTAATGATACCCGAGAT 890
Query 706 AGCAAAACGAATACAAATCCAATTCGTAAAAGCAATCGGATTTCTAAACGACGTGTTCTG 765
|||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 891 AGCAAAGCGAACACAAATCCTATTCGTAAAAGCAACCGGATTTCTAAACGACGTGTTCTG 950
Query 766 GATGAGGAACTCGATAGTCTTGATGATGATGATGAAGAAATTCAGTTTCTCAAAAGGATG 825
||||| |||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 951 GATGAAGAACTCGATAGTCTTGATGATGATGACGAAGAAATTCAATTTCTCAGAAGGATG 1010
Query 826 AAAATGGCTAAAGTTGTGGCTGT-G--GAAGATGTTGATGACGATGAAGAAAGGAGCAGA 882
||||||||||||||||||||||| | ||||||||||||||||||||||| |||| ||||
Sbjct 1011 AAAATGGCTAAAGTTGTGGCTGTAGAAGAAGATGTTGATGACGATGAAGACAGGACCAGA 1070
Query 883 AAACATAAAAAGCTTTCCAAGGTAATGAAACAAATTGTAGAATTCCCACGTGGTGTAGGA 942
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1071 AAACATAAAAAGCTTTCCAAGGTAATGAAACAAAATGTAGAATTCCCACGTGGTGTAGGA 1130
Query 943 ACATCAGAAAAGTCAGCCAAGAAGGATAAGATGGGAAAAGCATTT---GATACTGATTAT 999
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1131 ACATCAGAAAAATCAGCCAAGAAGGATAAGATGGGAAAAGCATTTGACGATGCTGATTAT 1190
Query 1000 GTCAAGGACGATGATGATGAGGAAGAAGAAGAGGCTGTTTCAGATGTTGAGCTAGAAAAT 1059
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GTCAA-G--GATGATGATGAGGAAGAAGAAGAGGCTGTTTCAGATGTTGAGCTAGAAAAT 1247
Query 1060 AAGAGCACGAGAACTAGAAGAAGAGGAGCTGAAGATGGTCAGAGTGAAGTTAAGACAGAA 1119
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1248 AAGAGCGCGAGAACT---AGAAGAGGAGCTGAAGAAGGTCAGAGTGAAGTTAAGACAGAA 1304
Query 1120 ATGACTGTGACTACTCGTCGACGTTCTGGACATAGTGGAAACCTCATCGAGTTTCCTCGT 1179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1305 ATGACTGTGACTACTCGTCGACGTTCTGGACATAGTGGAAACCTTATCGAGTTTCCTCGT 1364
Query 1180 GGCCTACCTCCAGCTCCACCTAGAAAGCGAAAAGAAAATGGATTAGAGGTTGATCAGCAA 1239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GGCCTACCTCCTGCTCCACCTAGAAAGCGAAAAGAAAATGGATTAGAGGTTGATCAGCAA 1424
Query 1240 CTAAAGAAAGCTGAGGCTGCCCAGAGACGTAAATTGCAAGTCGAAAAGGCAGCAAGAGAA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1425 CTAAAGAAAGCTGAGGCTGCCCAGAGACGTAAATTGCAAGTCGAAAAGGCAGCTAGAGAA 1484
Query 1300 TCAGAGGCTGAGGCAATCAGGAAGATTCTGGGCCAAGACTCTAGCagaaagaagaaggaa 1359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1485 TCAGAGGCTGAGGCAATCAGGAAGATTCTGGGACAAGACTCTAGCAGAAAGAAGAAGGAA 1544
Query 1360 gataagataaagaaacgccaagaagacaaagccaaggagaagGCTGCAGACTCGATCGCC 1419
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1545 GATAAGATAAAGAAACGCCAAGAAGACAAGGCCAAGGAGAAGGCTGCAGACTCGATTGCC 1604
Query 1420 CGTAGATCAGACACAGTGAAGTGGGTGATGGGTCCTTCAGGAACCATCGTAACCTTCCCA 1479
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1605 CGTAGATCAGACACAGTGAAGTGGGTGATGGGTCCTTCAGGAACCATAGTAACCTTCCCA 1664
Query 1480 GAAGAACTTGGATTGCCAAGTATATTCAACTCTACACCACACAGTTACCCTCCACCGCGA 1539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1665 GAAGAACTTGGATTGCCAAGTATATTCAACTCTACACCACACAGTTATCCTCCACCGCGG 1724
Query 1540 GAAAGATGTGCGGGTCCAGAATGTACAAACCCATACAAATACAGAGATTCAGAGTCAAAT 1599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1725 GAAAGATGTGCGGGTCCAGAATGTACAAACCCATACAAATATAGAGATTCAGAGTCAAAT 1784
Query 1600 CTTCCATTGTGCAGCCTCCGATGCTACAAAGCAATCAAAGGCTAAGTGATGGATATATTG 1659
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1785 CTTCCATTGTGCAGCCTCCGATGCTACAAGGCAATCAAAGGCTAAGTGATGGATATATTG 1844
Query 1660 TGATCATACTATT-GTATAAAATAATATTTATATCGTTCATGTAAATACTAATAATAAAG 1718
||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||
Sbjct 1845 TGATCATACTATTTGTATAATATAATATTT-TAGCGTTCATGTAAATACTAATAATAAAG 1903
Query 1719 CACTATATCATACTGTTTGTTGTTCAA-CAAGAGTTGAATGTCTATAAACATAGATGACT 1777
|||||||||||||||||||||||| || ||||| |||||||| |||||||||| |||| |
Sbjct 1904 CACTATATCATACTGTTTGTTGTT-AAGCAAGATTTGAATGTTTATAAACATATATGAAT 1962
Query 1778 ATATCATACTGT 1789
||||||||||||
Sbjct 1963 ATATCATACTGT 1974
Score = 326 bits (176), Expect = 6e-88
Identities = 200/212 (94%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 95 CTCAAAGTTCGATCCTTTGAATCTAAATCAGGTATGTGAAGCTTTGATTTTTGAGTCAAG 154
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 160 CTCAAAGTTCGATCCTTTGAATCTAAATCAGGTATGTGGAGCTTTGATTTTTGAGTGAAA 219
Query 155 CAAGACCAATTATGGAAAGTCTTGGAGGTATTGGATTCAGTAATACTAACAGTGCAACAA 214
||| | |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 220 CAAAAACAATTATGGAAAGTCTTGGAGGTATTGGATTCAGTAATACGAGTAGTGCAACAA 279
Query 215 AGAAGAAGAGAAGCACCACATTGCGTCGGCCTTGGAATGAGCGACAGTTACAGGATTCTT 274
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 280 AGAAGAAGAGAAGCACTACATTGCGTCGGCCTTGGAATGATCGACAGTTACAGGATTCTT 339
Query 275 CGTCATTGCCATCCACACCAGTCACTGACAAT 306
| ||||||||||||||||||||| ||||||||
Sbjct 340 CTTCATTGCCATCCACACCAGTCGCTGACAAT 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88503560835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5