BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474813
Length=1568
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specifi... 2194 0.0
AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransf... 835 0.0
AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransf... 813 0.0
> AT1G56550.1 | Symbols: RXGT1 | RhamnoGalacturonan specific
Xylosyltransferase 1 | chr1:21185662-21188369 REVERSE
LENGTH=1625
Length=1625
Score = 2194 bits (1188), Expect = 0.0
Identities = 1449/1572 (92%), Gaps = 30/1572 (2%)
Strand=Plus/Plus
Query 1 ACACGACATAAAACATGATAAATAATTATGACCAAACACATATATAATAATGTAGGTTAC 60
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 65 ACACAACATAAAACATGATAACTAATTCTGACCAAACACATATATAATAATGTAGGTTAC 124
Query 61 CTCTTCACGTTGTTATATTTTTTAA-AAAATAATAACGTAGGTTGTGTATCTCTACACGT 119
||||||||||||||||| ||| || |||| |||||||||| ||| ||||||||||||||
Sbjct 125 CTCTTCACGTTGTTATA-GTTTAAACAAAACAATAACGTAGATTGAGTATCTCTACACGT 183
Query 120 TGTCATTCCAGAAG-GTGTCGTTGACtttttacttttttgtt-ttttCCTCATATTTTCC 177
||||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 184 TGTCATTCCTGAAGAGTGTCGTTGACTTTTTAGTTTTTTGTTCTTTTCCTCATATTTTCC 243
Query 178 AATTTTCGAATCCGATC--ACAACTTTTGTGAAAACTTTTCTTTCCAATTTTGTTTCCAT 235
|||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 244 AATTTTTGAATCCGATCAAACAAC--TTGTGAAAACTTTTCTTTCCAAATTTGTTTCCAT 301
Query 236 GGCGCAGCAGAACCAACGTCCAATCTCAAACCGTTC-CAtctctctcctcaaccgcaacg 294
||||||||||| ||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct 302 GGCGCAGCAGAGCCAACGTCCAATCTCAAACCG-TCACATCTCTCTCCTCAACCGTAACG 360
Query 295 gtctcctcctccttctccttctagctctctTCGTTATCCTAGGTGTGTTCCTACCTTTAA 354
||||| ||||||||||||||||||||||||| |||||||| ||||| ||| ||||||| |
Sbjct 361 GTCTCATCCTCCTTCTCCTTCTAGCTCTCTTTGTTATCCTCGGTGTATTCTTACCTTTGA 420
Query 355 CAGGATCTTCCTTATTCCTGTCTCCAGACACAACAtcttcttctctttctccttcttctt 414
|| ||||||||| ||| ||| |||| |||||||||||||||||||||||||||||||||
Sbjct 421 CAAAATCTTCCTTGTTCATGTTTCCAAACACAACATCTTCTTCTCTTTCTCCTTCTTCTT 480
Query 415 cttTATCGGTCTCCGACTGGAGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTGGCTA 474
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 481 CTTTATCGGTCTCCGACTGGCGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTTGCTA 540
Query 475 AGAACGAGACTGTGATCGTCTGTGCCGTTAGCTACCCTTTCTTGCCTTTTCTCAACAACT 534
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 541 AGAACGAGACTGTGATCGTCTGTGCTGTTAGCTACCCTTTCTTGCCTTTTCTTAACAACT 600
Query 535 GGTTAATTAGCATTTCTAGACAGAACCATCAAGAAAAGGTTCTTGTGATCGCTGAAGATT 594
|||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 601 GGTTGATTAGCATTTCTAGACAGAAACATCAAGAAAAAGTTCTTGTGATCGCTGAAGACT 660
Query 595 ACGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCAG 654
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 ATGCTACTTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCGG 720
Query 655 CGTTGGATCCTCAAGCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATCTC 714
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGTTGGATCCTCAATCCGCACACAAATTTGGTTCCCAGGGTTTCTTCAATCTGACATCTC 780
Query 715 GGAGGCCACAACATCTCTTGAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATG 774
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGGCCACAACATCTCTTAAACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATG 840
Query 775 TTGATATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACT 834
||||||||||||||||||||||||| ||| | |||||||| |||||| |||| |||||||
Sbjct 841 TTGATATGGTCTGGCTACAAGATCCATTTGACTATTTACAAGGAAGCTACGATGCATACT 900
Query 835 TCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGGTCTACCACCTCGGA 894
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 901 TCATGGATGACATGATTGCGATTAAGCCTTTGAATCACTCCCATGATTTACCACCTCTAA 960
Query 895 GTCGAAGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCAACGGATGGCG 954
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 961 GTCGAAGCGGAGTTACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCCACTGATGGCG 1020
Query 955 CAAAACTTCTAATGAAGACATGGGTTGAGGAAATTCAAGTTCAACCTTGGAATAACACCC 1014
||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
Sbjct 1021 GAAAGCTTCTAATGAAGACATGGGTCGAGGAAATTCAAGCTCAACCTTGGAATAACACTC 1080
Query 1015 AAGCAAAGAAACCACATGATCAGCCTGCTTTTAATCGGGCACTTCACAAAACAGCTAATC 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGCAAAGAAACCACATGATCAGCCTGCTTTTAATCGGGCACTTCACAAAACAGCTAATC 1140
Query 1075 AGGTAGATGTCTACTTGCTTCCGCAATCAGCATTCCCGTCAGGAGGATTGTACTTCAAGA 1134
| ||| | ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 1141 AAGTAAAAGTCTACTTGCTTCCGCAATCAGCTTTCCCATCAGGAGGATTGTACTTCAGGA 1200
Query 1135 ATGAGACATGGGTTAATGAGACAAAGGGGAAACATGTCATAGTCCATAATAACTACATTA 1194
|||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1201 ATGAGACATGGGTTAACGAGACAAGGGGGAAACATGTCATAGTCCACAATAACTACATTA 1260
Query 1195 TCGGTTACGA-AAGGAAGATGAAACGCTTTCAAGACTTTAATCTATGGCTAGTAGATGAC 1253
|||||||||| ||| ||||||||||| ||||||||||||| |||||||||||| |||||
Sbjct 1261 TCGGTTACGACAAG-AAGATGAAACGTTTTCAAGACTTTAGTCTATGGCTAGTCGATGAT 1319
Query 1254 CATGCTCTCGAGTCTCCACTGGGAATATTAAAGATATATCAAGAGCAGAATACTACTACT 1313
|||||||| ||||| ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 1320 CATGCTCTTGAGTCCCCACTCGGAAAACTAGAGATATATCAAGAGCAGAATACTACTACT 1379
Query 1314 GAAGGGAAAAATCAGACGAAAACAGTGAGAAAACAGAGGAAAAACAGGGGTAAGAAACAT 1373
||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 1380 GAAGGGAAAAATCTGACGAAAATAGTGAGAAAACAGAGGAAAAACAGGGGTAAAAAACAC 1439
Query 1374 TAGTTACCCTAGAGAGGACTTCTTCTTATGTACAACAAGTATAGTATCTCGAAATTGTTG 1433
|||||||||||||||||||||| |||| |||| |||||| ||| |||||||||||||||
Sbjct 1440 AAGTTACCCTAGAGAGGACTTCTCCTTACGTACGACAAGTGTAGGATCTCGAAATTGTTG 1499
Query 1434 CCCAGAGATTTATTCAAACTCGATTACTTAGATTTATGTTCAAAGTCAGCACTATTTCTC 1493
| | ||||||||||||||||||||||||||||| ||||||||||||| | | |||
Sbjct 1500 CGCGGAGATTTATTCAAACTCGATTACTTAGATATATGTTCAAAGTCTCC-C-ATT---- 1553
Query 1494 ATAATAATATGATATTTATACATAGATACATTCATCAATCTTCAGCACTGTTTCATTATT 1553
|||||| | |||||||||||||| |||| | ||||| ||||| |||||||| |
Sbjct 1554 ATAATA-T--GATATTTATACATAAATAC-T-CATCA-------GCACTATTTCATTAAT 1601
Query 1554 AACTTTTATGTA 1565
||||||||||||
Sbjct 1602 AACTTTTATGTA 1613
> AT4G01750.1 | Symbols: RGXT2 | rhamnogalacturonan xylosyltransferase
2 | chr4:756363-758590 FORWARD LENGTH=1501
Length=1501
Score = 835 bits (452), Expect = 0.0
Identities = 862/1054 (82%), Gaps = 51/1054 (5%)
Strand=Plus/Plus
Query 256 CAATCTCAAACCGTTCCAtctctctcctcaaccgcaacggtctcctcctccttctccttc 315
|||||||||||||| |||||| |||||| | ||||||||| | ||||||||| ||||||
Sbjct 239 CAATCTCAAACCGTCCCATCTTTCTCCTTAGCCGCAACGG--T-CTCCTCCTTGTCCTTC 295
Query 316 tagctctctTCGTTATCCTAGGTGTGTTCCTACCTTTAACAGGATCTTCC-TTATTCCTG 374
| ||||||||| || |||| ||||| ||| |||||| | ||||| ||| || || ||
Sbjct 296 TCGCTCTCTTCCTTCTCCTCGGTGTATTCTTACCTTGGCCCGGATC-TCCTTTGTTGCTA 354
Query 375 TCTCCAGACACAACA-tcttcttctctttctccttcttcttc-tt-TATCGGTC-T-CC- 428
| ||| || |||| | || ||||||| |||| | ||||||| || | || | | | ||
Sbjct 355 TTTCC-GA-ACAA-AGTC-TCTTCTCCTTCTTATGCTTCTTCTTTGTCTCCG-CATGCCA 409
Query 429 GA-CTGGA--GCG--ACTATTCCCTTGCTCAAGCCGTTAAGTTTGTGGCTAAGAACGAG- 482
| ||| | ||| ||||| |||||||||| || | ||||||||| || | ||||| |
Sbjct 410 AATCTGAATGGCGTAACTATACCCTTGCTCAGGCAGCTAAGTTTGTCGCCACGAACG-GC 468
Query 483 ACTGTGATCGTCTGTGCCGTTAGCTAC-CCTTTCTTGCCTTTTCTCAACAACTGGTTAAT 541
|||||||||||||| ||||| |||| | || |||||||||||||||||||||||||| ||
Sbjct 469 ACTGTGATCGTCTGCGCCGTGAGCT-CACCATTCTTGCCTTTTCTCAACAACTGGTTGAT 527
Query 542 TAGCATTTCTAGACAGAACCATCAAGAAAAGGTTCTTGTGATCGCTGAAGATTACGCTAC 601
||| ||||||||||||| ||||||||||| || |||||||||||||| |||||| |||
Sbjct 528 TAGTGTTTCTAGACAGAAGCATCAAGAAAAAGTCCTTGTGATCGCTGAGGATTACATTAC 587
Query 602 TTTGTACAAAGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCAGCGTTGGA 661
| |||| ||||||||||||||||||||||| || || ||||| |||||||||||| | ||
Sbjct 588 TCTGTATAAAGTCAACGAAAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGA 647
Query 662 TCCTCAAGCCGCACACAAATTT-GGTTCCCAGGGTTTCTTCAATC-TGACATCTCGGAGG 719
| || || ||||| || | ||| |||||||||||||||||||| | | ||| |||| |||
Sbjct 648 TTCTAAAACCGCATAC-AGTTTCGGTTCCCAGGGTTTCTTCAA-CTTCACAGCTCGAAGG 705
Query 720 CCACAACATCTCTTG-AACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGA 778
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 706 CCACAACATCTCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGA 764
Query 779 TATGGTCTGGCTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTTCAT 838
|||||| ||| | |||||||| ||||| ||||| |||||||||| ||||| ||||| |
Sbjct 765 TATGGTTTGGTTGCAAGATCCATTTCAGTATTTGGAGGGAAGCCATGACGCGTACTTTAC 824
Query 839 GGATGACATGATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCTC-GGAGT 896
|||||| ||| | | | ||| ||||||||||||||| |||| | ||||| | | ||| |
Sbjct 825 GGATGATATGCCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCAGCGCCGGA-T 882
Query 897 CGAAGCGGAGTGACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCAACGGATGGCGCA 956
| || ||||| ||||||| |||||||||||||||||| |||||| | ||| |||| |||
Sbjct 883 CAAAACGGAGAGACTTATATATGTAGCTGCATGATTTACTTGCGACCCACGAATGGTGCA 942
Query 957 AAACTTCTAATGAAGACATGG-GTTGAGGAAATTCAAGTTC-AACCTTGGAATAACACCC 1014
|| ||||||||||||| |||| || |||||| |||| || | || ||||| | | ||
Sbjct 943 AAGCTTCTAATGAAGAAATGGAGT-GAGGAACTTCA-GTCCCAAGCTTGGTCTGAGTCC- 999
Query 1015 AAGCAAAG-AAACCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAA 1072
| | ||| || ||||||||||||||||||| | || ||||| |||||||||| |
Sbjct 1000 ATCCGTTTTAAAGCAAATGATCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCCCA 1058
Query 1073 TCAGGTAGATGTCTACTTGCTTCCGCAA-TCAGCATTCCCGTCAGGAGGATTGTACTTCA 1131
||| || ||| ||||||||||| | || | ||| || || ||||||||||||| ||||
Sbjct 1059 TCAAGTGGATCTCTACTTGCTTTCTCAGGT-AGCTTTTCCAACAGGAGGATTGTATTTCA 1117
Query 1132 A-GAATGAGACATGGGTTAATGAGACAAAGGGGAAACATGTCATAGTCCATAATAACTAC 1190
| || || | |||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1118 ATGA-TGCGGCATGGGTTAAAGAGACAAAGGGGAAACATGTCATAGTCCACAATAACTAC 1176
Query 1191 ATTATCGGTTACGAAAGGAAGATGAAACGCTTTCAAGACTT-TAATCTATGGCTAGTAGA 1249
|||||||||||||| ||||| |||| ||| || ||||| || | |||||||||||| ||
Sbjct 1177 ATTATCGGTTACGATAGGAAAATGAGACGGTTCCAAGA-TTATGGTCTATGGCTAGTCGA 1235
Query 1250 TGACCATGCTCTCGAGTCTCCACT-GGGAATATT 1282
||| |||||||||||||||||| | ||||| |||
Sbjct 1236 TGATCATGCTCTCGAGTCTCCATTAGGGAA-ATT 1268
> AT4G01770.1 | Symbols: RGXT1 | rhamnogalacturonan xylosyltransferase
1 | chr4:764514-766865 FORWARD LENGTH=1405
Length=1405
Score = 813 bits (440), Expect = 0.0
Identities = 853/1047 (81%), Gaps = 50/1047 (5%)
Strand=Plus/Plus
Query 256 CAATCTCAAACCGTTCCAtctctctcctcaaccgcaacggtctcctcctccttctccttc 315
|||||||| ||||| ||||||||||||| | ||||||||| | ||||||||||||||||
Sbjct 115 CAATCTCAGACCGTCCCATCTCTCTCCTTAGCCGCAACGG--T-CTCCTCCTTCTCCTTC 171
Query 316 tagctctctTCGTTATCCTAGGTGTGTTCCTACCTTTAACAGGATCTTCCTTATTCCTGT 375
| |||||| || | |||| ||||| || | || | |||||||| ||||||||||||
Sbjct 172 TCGCTCTCGTCCTGCTCCTCGGTGTACTCTTGCCCTGGCCAGGATCTCCCTTATTCCTGT 231
Query 376 CTCCAGACACA-ACAtcttcttc-tctttctccttcttcttcttTATCGGTCTCCGACTG 433
|||| | | | || | |||||| ||||| | | | | || | || ||| | ||
Sbjct 232 TTCCA-A-ATAGAC-T-TTCTTCTTCTTTGT-C-AC--CGTC--T-CCGCAGTCCAAATG 280
Query 434 GAGCGACTATTCCCTTGCTCAAGCCGTTAAGTTTGTGGCTAAGAACGAG-ACTGTGATCG 492
| |||||||| |||||||||| || | || ||| ||||| ||||| | | |||||||| |
Sbjct 281 GCGCGACTATACCCTTGCTCAGGCGGCTAGGTTCGTGGCCAAGAATG-GCACTGTGATAG 339
Query 493 TCTGTGCCGTTAGCTAC-CCTTTCTTGCCTTTTCTCAACAACTGGTTAATTAGCATTTCT 551
|||| ||||| |||| | || |||||||||||||||||||||||||| ||||| |||||
Sbjct 340 TCTGCGCCGTGAGCT-CACCATTCTTGCCTTTTCTCAACAACTGGTTGATTAGTGTTTCT 398
Query 552 AGACAGAACCATCAAGA-AAAGGTTCTTGTGATCGCTGAAGATTACGCTACTTTGTACAA 610
||||| || |||||||| ||| || || ||||||||||| |||||| |||| |||| ||
Sbjct 399 AGACAAAAGCATCAAGACAAA-GTCCTCGTGATCGCTGAGGATTACATTACTCTGTATAA 457
Query 611 AGTCAACGAAAAGTGGCCTGGTCATGCTGTTCTCATTCCTCCAGCGTTGGATCCTCAAGC 670
||||||||| ||||||||||| || || ||||| |||||||||||| | ||| || || |
Sbjct 458 AGTCAACGAGAAGTGGCCTGGCCACGCCGTTCTTATTCCTCCAGCGCTCGATTCTAAAAC 517
Query 671 CGCACACAAATTT-GGTTCCCAGGGTTTCTTCAATCTGACATCTCGGAGGCCACAACATC 729
|||| | | ||| ||||||||||||||||||||| | ||| |||| ||||| |||||||
Sbjct 518 CGCATTC-AGTTTCGGTTCCCAGGGTTTCTTCAATTTCACAGCTCGAAGGCCGCAACATC 576
Query 730 TCTTG-AACATTTTGGAGCTAGGTTACAATGTTATGTACAATGATGTTGATATGGTCTGG 788
||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 577 TCTTGCAA-ATTTTGGAGCTAGGTTACAATGTTATGTACAACGATGTTGATATGGTTTGG 635
Query 789 CTACAAGATCCGTTTCAATATTTACAGGGAAGCCACGACGCATACTTCATGGATGACATG 848
| |||||||| |||| ||||| |||||||||| ||||| || |||| |||||||||
Sbjct 636 TTGCAAGATCCATTTCTGTATTTGGAGGGAAGCCATGACGCGTATTTCACCGATGACATG 695
Query 849 ATTGCGATTAA-GCCTTTGAATCACTCCCATGGTCTACCACCTC-GGAGTCGAAGCGGAG 906
| | | ||| ||||||||||||||| |||| | |||||| || ||| ||||| |||||
Sbjct 696 CCT-CAAATAAAGCCTTTGAATCACTCTCATGATTTACCACATCCGGA-TCGAAACGGAG 753
Query 907 TGACTTATGTATGTAGCTGCATGATTTTCTTGCGTTCAACGGATGGCGCAAAACTTCTAA 966
||||||| |||||||||||||||||| |||||| | ||| |||| ||||| |||||||
Sbjct 754 AGACTTATATATGTAGCTGCATGATTTACTTGCGACCTACGAATGGTGCAAAGCTTCTAA 813
Query 967 TGAAGACATGG-GTTGAGGAAATTCAAGTTC-AACCTTGGAATAACACCCAAGCAAAG-A 1023
|||||| |||| || |||||| ||||| | | || ||||| | | | ||| | |
Sbjct 814 TGAAGAAATGGAGT-GAGGAACTTCAA-TCCCAAGCTTGGTCTGA-ATCCATCCGTTTTA 870
Query 1024 AACCACATGATCAGCCTGCTTTTAA-TCGGGCACTTCACAAAACAGCTAATCAGGTAGAT 1082
|| || ||||||||||||||||||| | || ||||| ||||||||||| |||| || |||
Sbjct 871 AAGCAAATGATCAGCCTGCTTTTAACTTGG-CACTTAACAAAACAGCTCATCAAGTGGAT 929
Query 1083 GTCTACTTGCTTCCGCAA-TCAGCATTCCCGTCAGGAGGATTGTACTTCAAGAATGAGAC 1141
||||||||||| | ||| | ||| ||||| |||||||||||||||||||||| ||| |
Sbjct 930 CTCTACTTGCTTTCTCAAGT-AGCTTTCCCAACAGGAGGATTGTACTTCAAGAACGAGGC 988
Query 1142 ATGGGTT-AATGAGACAAAGGGGAAACATGTCATAGTCCATAATAACTACATTATCGGTT 1200
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 989 ATGGGTTCAA-GAGACAAAGGGGAAACATGTCATAGTCCACAATAACTACATTATCGGTT 1047
Query 1201 ACGAAAGGAAGATGAAACGCTTTC-AAGACTTTAA--TCTATGGCTAGTAGATGACCATG 1257
|||| ||||| |||||||| |||| |||| || | ||||||||| || ||||| || |
Sbjct 1048 ACGACAGGAAAATGAAACG-TTTCCAAGA-TT-ACGGTCTATGGCTTGTCGATGATCACG 1104
Query 1258 CTCTCGAGTCTCCACT-GGGAATATTA 1283
|||| ||||||||| | ||||| ||||
Sbjct 1105 CTCTTGAGTCTCCATTAGGGAA-ATTA 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77409240390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5