BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474815
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56560.1 | Symbols: | Plant neutral invertase family protei... 2604 0.0
AT3G06500.1 | Symbols: | Plant neutral invertase family protei... 671 0.0
> AT1G56560.1 | Symbols: | Plant neutral invertase family protein
| chr1:21192499-21195112 FORWARD LENGTH=2109
Length=2109
Score = 2604 bits (1410), Expect = 0.0
Identities = 1565/1638 (96%), Gaps = 18/1638 (1%)
Strand=Plus/Plus
Query 213 AATTCTCCACATCCGTTGAAACCAATTC-CAGTGACAAGAGTTTCGAGAGAATTCATGTT 271
||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 330 AATTCTCAACATCCGTTGAAACTAA-TCTCAGTGACAAGAGTTTCGAGAGAATTCATGTT 388
Query 272 CAGAGTGGTGCAATTTTAGAAAGGATACACAAAAACGAAGAAG-A--AGAAACTGTTTCT 328
|| |||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||
Sbjct 389 CAAAGTGATGCAATTTTAGAAAGGATACACAAAAACGAAGAAGAAGTAGAAACAGTTTCT 448
Query 329 AAAGTAAAT-GTagaaactgagagagttgtgagagaagagagtgaagctgagaaagaagC 387
| | | |||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 449 --A-T---TGGTAG----TGAGAAAGTTGTGAGAGAAGAGAGTGAAGCTGAGAAAGAAGC 498
Query 388 GTGGAGGATTTTGGAAAACGCTGTTGTTAGGTATTGTGGTTCGCCGGTAGGGACTGTGGC 447
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 499 GTGGAGGATTTTGGAAAACGCTGTTGTTAGGTATTGTGGTTCTCCGGTTGGGACAGTGGC 558
Query 448 GGCGAATGATCCTGGAGATAAGATGCCTTTGAATTATGATCAAGTGTTTATTAGAGATTT 507
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 559 GGCGAATGATCCTGGAGATAAGATGCCTTTGAATTATGATCAAGTTTTTATAAGAGATTT 618
Query 508 TGTACCTTCTGCTTTAGCTTTTTTGCTTAAAGGAGAAGGTGATATTGTTAGGAACTTTCT 567
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 619 TGTGCCTTCTGCTTTGGCTTTTTTGCTTAAAGGTGAAGGTGATATTGTTAGGAACTTTCT 678
Query 568 TCTACATACATTGCAGCTTCAGAGTTGGGAGAAAACTGTAGATTGTTACAGTCCTGGACA 627
|| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 679 CCTTCATACATTACAGCTTCAGAGTTGGGAGAAAACTGTAGACTGTTACAGTCCTGGACA 738
Query 628 GGGCTTGATGCCTGCGAGTTTTAAAGTAAGAACCGTGGCGCTTGATGAGAACACTACGGA 687
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 739 GGGTTTGATGCCTGCAAGTTTTAAAGTAAGAACTGTGGCGCTTGATGAGAACACTACGGA 798
Query 688 AGAGGTTTTGGATCCGGATTTTGGTGAATCAGCTATTGGTCGTGTTGCTCCTGTTGATTC 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 799 AGAGGTTTTGGATCCGGATTTTGGTGAATCAGCTATTGGTCGTGTTGCTCCTGTGGATTC 858
Query 748 TGGTTTGTGGTGGATTATTCTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCATT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 859 TGGTTTGTGGTGGATTATTCTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCGTT 918
Query 808 ACAAGAGAGGATAGATGTTCAGACAGGGATAAAGCTTATCATGAACTTGTGTTTAGCAGA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 ACAAGAGAGGATAGATGTTCAGACAGGGATAAAGCTTATCATGAACTTGTGTTTAGCAGA 978
Query 868 TGGATTTGATATGTTTCCAACACTTTTGGTCACTGATGGTTCTTGTATGATTGATCGTCG 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TGGATTTGATATGTTTCCAACACTTTTGGTCACTGATGGTTCTTGTATGATTGATCGTCG 1038
Query 928 TATGGGTATCCATGGCCATCCC-CTTGAAATCCAATCGTTATTCTACTCAGCACTCAGAT 986
|||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1039 TATGGGTATCCATGGCCA-CCCTCTCGAAATCCAATCGTTATTCTACTCAGCACTAAGAT 1097
Query 987 GCTCCCGTGAGATGCTTTCTGTTAATGACAGCTCCAAGAATCTTGTAAGAGCCATTAACA 1046
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1098 GCTCCCGTGAGATGCTTTCTGTTAATGATAGCTCTAAGGATCTTGTAAGAGCCATTAACA 1157
Query 1047 ATAGGTTAAGTGCTCTGTCATTTCATATCAGAGAGTACTACTGGGTGGACATAAAAAAGA 1106
|||| ||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1158 ATAGATTAAGTGCTTTGTCCTTTCATATCAGAGAATACTACTGGGTGGACATAAAAAAGA 1217
Query 1107 TCAATGAGATATACCGTTACAAGACAGAAGAGTATTCCACGGATGCGACTAACAAGTTCA 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TCAATGAGATATACCGTTACAAGACAGAAGAGTATTCCACGGATGCGACTAACAAGTTCA 1277
Query 1167 ACATCTATCCTGAGCAAATTCCTCCATGGCTCATGGACTGGATTCCCGAGCAAGGTGGAT 1226
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1278 ACATCTATCCTGAGCAAATTCCTCCATGGCTCATGGACTGGATACCCGAGCAAGGTGGGT 1337
Query 1227 ATCTCCTCGGGAACCTACAACCTGCTCACATGGATTTCAGATTCTTCACGCTCGGGAACT 1286
||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1338 ATCTCCTTGGGAACCTACAACCTGCACACATGGATTTCAGATTCTTCACGCTTGGGAACT 1397
Query 1287 TTTGGTCTATTGTTTCGTCCTTGGCTACACCCAAGCAGAATGAAGCTATATTGAACTTAA 1346
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1398 TTTGGTCTATTGTTTCGTCCTTGGCTACACCAAAGCAGAATGAAGCTATATTGAACTTAA 1457
Query 1347 TTGAAGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TTGAAGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT 1517
Query 1407 TAGAGTACGATGATTGGCGTATAATAACTGGAAGCGACCCAAAGAACACGCCTTGGTCGT 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TAGAGTACGATGATTGGCGTATAATAACTGGAAGCGACCCAAAGAACACGCCTTGGTCGT 1577
Query 1467 ATCACAACAGTGGATCCTGGCCCACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGA 1526
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1578 ATCACAACAGTGGATCCTGGCCAACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGA 1637
Query 1527 TGGGAAGACCAGAGCTAGCGGAAAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAG 1586
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 TGGGAAGACCAGAGCTAGCTGAAAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCAG 1697
Query 1587 ATCGGTGGCCAGAGTATTACGACACCCGATCTGGCAAATTCATTGGAAAGCAGTCCCGGC 1646
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1698 ATCGTTGGCCAGAGTACTACGACACCCGATCTGGCAAATTCATTGGAAAGCAGTCTCGCC 1757
Query 1647 TTTACCAAACATGGACAGTCGCTGGATTCTTGACTTCTAAACTCCTCCTAGCTAATCCAG 1706
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1758 TCTACCAGACATGGACAGTCGCTGGATTCTTGACTTCTAAACTCCTCCTAGCAAATCCAG 1817
Query 1707 AGATGGCATCACTGTTATTCTGGGAAGAAGATTATGAACTTCTGGATATCTGTGCCTGTG 1766
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||
Sbjct 1818 AGATGGCATCACTGTTATTCTGGGAAGAAGATTACGAACTTCTCGATATTTGTGCATGTG 1877
Query 1767 GTCTCCGAAAATCTGACCGGAAGAAATGCTCCCGAGTCGCTGCCAAGACTCAAATTCTTG 1826
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1878 GTCTTAGAAAATCTGACCGGAAGAAATGCTCCCGAGTCGCTGCCAAGACTCAGATTCTTG 1937
Query 1827 TTCGATGAGTGCAAAACA 1844
|||||||| |||||||||
Sbjct 1938 TTCGATGAATGCAAAACA 1955
Score = 298 bits (161), Expect = 1e-79
Identities = 197/214 (92%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 1 CTCGTCTCTAACCATGAGCGCAATCTATCTCCTCCGCAAAATTTCCACGAAAACTCCTTC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 82 CTCATCTCTAACCATGAGCGCAATCTATCTCCTCCGCAAAATTTCCACGAAAACTCCTTC 141
Query 61 ACGATTTCACAGAAGCCTCTTCTTCTCCACTTTCTCCAAGGAATCAAAACCAGATTCATC 120
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 142 ACGATTTCACAGAAGCCTCTTCTTCTCCACTTTCTCCAAGGATTCACCACCAGATTTATC 201
Query 121 ACGAACAAACTCAATTCGCCATTTAGCA--A-GCCAGAGATTCGTCCCTTCGTCCATTTA 177
||||| | |||||||||||||||| || | |||||||||||||| |||||||||||||
Sbjct 202 TCGAACCACCTCAATTCGCCATTTATCATCAAGCCAGAGATTCGTCTCTTCGTCCATTTA 261
Query 178 CCGTTTTCCCCAATCAAAAATTTTACCTAATCGA 211
| |||| ||||||||||| |||||||| ||||||
Sbjct 262 CTGTTTCCCCCAATCAAAGATTTTACCAAATCGA 295
> AT3G06500.1 | Symbols: | Plant neutral invertase family protein
| chr3:2012079-2015705 FORWARD LENGTH=2459
Length=2459
Score = 671 bits (363), Expect = 0.0
Identities = 1070/1402 (76%), Gaps = 85/1402 (6%)
Strand=Plus/Plus
Query 422 TGT-GGTTCGCCGGTAGGGACTGTGGCGGCGAATGATCCTGGAGATAAG-ATGCCTTTGA 479
||| ||||| || || |||||||| ||||| |||||||| || |||| | | | ||||||
Sbjct 813 TGTGGGTTC-CCTGTGGGGACTGTAGCGGCTAATGATCCAGGGGATACGCA-GACTTTGA 870
Query 480 ATTATGATCAAGTGTTTATTAGAGATTTTGTACCTTCTGCTTTA-GCTTTTTTGCTTAAA 538
| |||||||||||||||||| | |||||||| ||||| || || || ||| ||||| |
Sbjct 871 ACTATGATCAAGTGTTTATTCGTGATTTTGTTCCTTCGGC-GTATGCGTTTATGCTTGAT 929
Query 539 GGAGAAGGTGATATTGTTAGGAACTTTCTTCTACATACATTGCAGCTT-CAGAGTTGGGA 597
|||||||| || |||||||| |||||||| || |||||||||||| || ||||| |||||
Sbjct 930 GGAGAAGGGGAGATTGTTAGAAACTTTCTCCTTCATACATTGCAG-TTGCAGAGCTGGGA 988
Query 598 GAAAACTGTAGATTGTTACAGTCCTGG-ACAGGGCTTGATGCCTGCGAGTTTTAAAGT-A 655
|||||| || || ||| |||| ||||| | |||| | ||||| |||||||||||||| |
Sbjct 989 GAAAACAGTGGACTGTCACAGCCCTGGCCCGGGGC-TAATGCCAGCGAGTTTTAAAGTGA 1047
Query 656 AGAACCGTGGCGCTTGATGAG-AA-CA---CT-A-CGGAAGAGGTTTTGGATCCGGATTT 708
| | | | | | ||||| | | || | | | || ||| |||| ||||| || ||
Sbjct 1048 A-ATCTGCGCCACTTGA-GGGAAATGATGGTTCATTTGAGGAGTTTTTAGATCCAGACTT 1105
Query 709 TGGTGAATCAGCTATTGGTCGTGTT-GCTCCTGTTGATTCTGGTTTGTGGTGGAT--TAT 765
||||| |||||| ||||| |||||| || |||||||| ||||||||||||||||| |||
Sbjct 1106 TGGTGGATCAGCCATTGGACGTGTTAGC-CCTGTTGACTCTGGTTTGTGGTGGATCATAT 1164
Query 766 TCTCTTGAGGGCATATGGAAAGATAACTGGAGATTTCTCATTACAAGAGAGGATAGATGT 825
| | |||| || ||||||||| | || || || | | | || |||||||| || |||||
Sbjct 1165 T-GC-TGAGAGCTTATGGAAAGCTCACGGGTGACTACACGTTGCAAGAGAGAATTGATGT 1222
Query 826 TCAGACAGGGATAAAGCTT-ATCA-TGAA-CTTGTGTTTAGCAGATGGATTTGATATGTT 882
||| |||||||| ||| || || | | || ||| ||| |||| || || ||||| |||||
Sbjct 1223 TCAAACAGGGATCAAG-TTGAT-ACTCAAGCTT-TGTCTAGCCGACGGTTTTGACATGTT 1279
Query 883 TCCAACACT-TTTGGTCACTGATGGTTCTTGTATGATTGATCGTCGTATGGGTATCCATG 941
|| || || || |||||||| || || |||||| ||||||| | ||||| || ||||
Sbjct 1280 CCCGACTCTACTT-GTCACTGACGGATCATGTATGGTTGATCGAAGAATGGGGATTCATG 1338
Query 942 GCCATCCCCTTGAAATCCAATCGTTATTCTACTCAGCACTCAGATGCT-CCCGTGAGATG 1000
| ||||| |||||||||||| | ||||||||||| || ||| | || | | || ||||||
Sbjct 1339 GGCATCCACTTGAAATCCAAGCATTATTCTACTCCGCTCTCCGTTG-TGCTCGAGAGATG 1397
Query 1001 CTT-TCTGTTAATGACAGCTCCAAGAATCTT-GTAAGAGCCA-TTAACAATAGGTTAAGT 1057
||| | ||| ||||| | ||||| | ||| || | | || | |||||| | |||||
Sbjct 1398 CTTAT-TGTGAATGATGGAACCAAG-AGCTTAGTTACTG-CAGTCAACAATCGCCTAAGT 1454
Query 1058 GCTCTGTCATTTCATATCAGAGAGTACTACTGGGTGGACA-TAAAAAAGATCAATGAGAT 1116
||| | ||||| ||||||||||||||||| |||||||| | ||| ||| ||||| |||||
Sbjct 1455 GCTTTATCATTCCATATCAGAGAGTACTATTGGGTGGATATTAAGAAA-ATCAACGAGAT 1513
Query 1117 ATACCGTTACAAGACAGAAGAGTATTCCA-CGGATGCGACTAACAAGTTCAACATCTATC 1175
|||||||||||| ||||| ||||||| || | ||||| || |||||||| ||||| ||||
Sbjct 1514 ATACCGTTACAACACAGAGGAGTATT-CAGCAGATGCAACAAACAAGTTTAACATATATC 1572
Query 1176 CTGAGCAAATTCCTCCATGGCTCATGGACTGGATTCCCGAGCAAGGTGGATATC-TCCTC 1234
| || || || ||| | ||||| | ||||||||||| || |||| || || | || |
Sbjct 1573 CAGAACAGATCCCTACTTGGCTTGTCGACTGGATTCCTGATAAAGGCGGTTA-CTTCATA 1631
Query 1235 GGGAACCTACAACCTGCTCACATGGATTTCAGATTCTTCACGCTCGGGAACTTTTGGTCT 1294
|| || || || ||||||||||||||||||||||||||||| || || ||| | ||| |
Sbjct 1632 GGAAATCTCCAGCCTGCTCACATGGATTTCAGATTCTTCACACTTGGAAACCTCTGGGCC 1691
Query 1295 ATTGTTTCGTCCTTGGCTACACCCAAG--CAGAATGAAGCTA-T-ATTGA-ACTTAATTG 1349
|| ||||||| |||| | ||| ||| |||||||||| | | || || | || ||||
Sbjct 1692 GTTATTTCGTCTTTGGGAA-ACC-AAGAACAGAATGAAGG-AGTCAT-GACA-TTGATTG 1746
Query 1350 AAGCTAAATGGGACGATATTATTGGGAATATGCCTCTTAAGATCTGTTACCCTGCAT-TA 1408
||| |||||||| ||| || ||| || |||||||| |||||||||| || || | |
Sbjct 1747 AAGAGAAATGGGATGATCTTGTTGCAAACATGCCTCTCAAGATCTGTTTTCCGGC-TCTG 1805
Query 1409 GAGTACGATGATTGGCGTATAATAACTGGAAGC-GACCCAAAGAACACGCCTTGGTCGTA 1467
||| | ||||| ||||| ||||| || ||| | || |||||||| ||||||||||| ||
Sbjct 1806 GAGAAAGATGAATGGCGAATAATCACCGGAT-CTGATCCAAAGAATACGCCTTGGTCATA 1864
Query 1468 TCACAACAGTGGATCCTGGCCCACACTTCTTTGGCAGTTCACATTAGCATGTATGAAGAT 1527
|||||| | ||||||||||| || || || |||||||||||||| || ||||| |||||
Sbjct 1865 TCACAATGGCGGATCCTGGCCAACTCTCCTCTGGCAGTTCACATTGGCTTGTATTAAGAT 1924
Query 1528 GGGAAGACC-AGAGCTAGCGGA-AAAGGCTCTTGCAGTGGCTGAGAAGAGACTGTTGGCA 1585
||||| | | ||| || ||| | |||| | |||| || || || || || || || |
Sbjct 1925 GGGAA-AGCTAGAACTGGCGAAGAAAG-CAGTTGCTGTAGCAGAAAAAAGGCTAAAGGAA 1982
Query 1586 GATCG-GTGGCCAGAGTATTACGACACCCGAT-CTGGCAAA-TTCATTGG-AAAGCAGTC 1641
||| | |||||| |||||||| ||||| | | || || || | || ||| || ||
Sbjct 1983 GAT-GAGTGGCCTGAGTATTATGACACGAAAAGC-GG-AAGGTTTGTGGGGAAA-CAATC 2038
Query 1642 CCGGCTTTACCAAACATGGAC-AGTCGCTGGATTCTTGACTTCTAA-ACTCCTCCTAG-- 1697
|||||||||| || ||||| | | || || |||||| | |||| | | | |||
Sbjct 2039 AAGGCTTTACCAGACTTGGACCA-TAGCGGGTTTCTTGGCAGCTAAGAAAC-TAATAGAG 2096
Query 1698 CTAATCCAGAGATGGCATCACTGTTATTCTGGGAAGAAGATTATGAACTTCTGGATATCT 1757
| || || |||| |||||||| || ||||||||||| || ||| | || || || | ||
Sbjct 2097 C-AA-CCTGAGAAAGCATCACTCTTGTTCTGGGAAGAGGACTATCAGCTGCTCGAGA-CT 2153
Query 1758 -GTGCCTGTGGTCTCCG-AAAA 1777
||| |||||| ||| | ||||
Sbjct 2154 TGTGTCTGTGGCCTCAGTAAAA 2175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96836851305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5