BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474818
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium... 2041 0.0
> AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium
subunit family protein | chr1:21202020-21204742 REVERSE LENGTH=1523
Length=1523
Score = 2041 bits (1105), Expect = 0.0
Identities = 1270/1350 (94%), Gaps = 9/1350 (1%)
Strand=Plus/Plus
Query 1 AGAGATGCTTCAATGTATATTCCTCATCTCCGATTCTGGAGAGGTGATGCTAGAGAAGCA 60
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 42 AGAGATGCTTCAATGTATCTTTCTCATCTCCGATTCTGGAGAGGTAATGCTAGAGAAGCA 101
Query 61 GCTTACGGGTCATCGCGTTGATCGATCCATTTGTGCTTGGTTCTGGGATCAATCTATTTC 120
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||| ||||||
Sbjct 102 GCTTACTGGTCATCGCGTTGATAGATCCATATGTGCTTGGTTCTGGGATCAATATATTTC 161
Query 121 TCAAGGCGATTCCTTTAAGTTACTTCCAGTGATTGCTTCACCAACACATTATCTATTTCA 180
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 162 TCAAGGCGATTCCTTTAAGGCACTTCCAGTGATTGCTTCACCAACACATTATCTATTTCA 221
Query 181 AATCGTTCGCGATGGCATTACGTTATTAGCTTGTAGTCAAGTTGAAATGCCACCGTTGAT 240
||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 222 AATTGTTCGTGACGGAATTACGTTCTTAGCTTGTAGTCAAGTTGAAATGCCACCGTTGAT 281
Query 241 GGCAATCGAGTTTCTTTGCAGAGTTGCTGATGTTTTGTCTGATTACCTTGGTGGGTTAAA 300
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 282 GGCAATCGAGTTCCTTTGCAGAGTTGCTGATGTTTTGTCTGAGTACCTTGGTGGGCTAAA 341
Query 301 TGAAGATCTGGTTAAGGATAATTTCATCATTGTCTATGAGCTTTTGGATGAGATGATCGA 360
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TGAAGATCTCATTAAGGATAATTTCATCATTGTCTATGAGCTTTTGGATGAGATGATCGA 401
Query 361 TAATGGTTTCCCTCTCACAACAGAACCGAGCATCCTGAGGGAAATGATAGCTCCACCAAA 420
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| ||
Sbjct 402 TAATGGTTTCCCTCTCACAACAGAACCTAGTATCCTGAAGGAAATGATAGCTCCACCGAA 461
Query 421 CCTAGTCAGCAAAATGTTGAGTGTTGTAACGGGAAATGCATCCAATGTTAGTGACACACT 480
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 462 TCTAGTCAGCAAAATGTTGAGTGTTGTAACGGGAAATGCTTCGAATGTTAGTGACACGCT 521
Query 481 CCCGAGTGGGGCTGGCTCTTGTGTTCCATGGCGACCGACAGATCCAAAGTACTCTAGCAA 540
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 522 TCCGAGTGGGGCGGGCTCTTGTGTTCCTTGGCGACCGACAGATCCAAAGTACTCTAGCAA 581
Query 541 CGAAGTTTATGTCGACCTCGTTGAAGAAATGGATGCAATTGTAAACAGGGATGGAGAATT 600
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 582 CGAAGTTTATGTCGACCTTGTTGAAGAGATGGATGCAATTGTAAACAGGGATGGAGAATT 641
Query 601 GGTAAAGTGCGAGATTTATGGCGAAGTCCAAATGAATTCCCAGCTCAGTGGTTTTCCAGA 660
|||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 642 GGTAAAATGCGAGATTTATGGCGAAGTCCAAATGAATTCTCAGCTCACTGGTTTTCCAGA 701
Query 661 TTTGACATTGTCGTTTGCGAATCCAGCCATCCTCGAAGACATAAGGTTTCACCCGTGTGT 720
||||||||||||||||||||||||| | ||||| |||||||| |||||||||||||||||
Sbjct 702 TTTGACATTGTCGTTTGCGAATCCATCAATCCTAGAAGACATGAGGTTTCACCCGTGTGT 761
Query 721 CCGCTTCAGACCGTGGGAATCTCATCAAGTTCTCTCATTTGTCCCTCCAGATGGAGAGTT 780
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 762 CCGCTACAGACCATGGGAATCTCATCAAGTTCTCTCCTTTGTCCCTCCAGATGGAGAGTT 821
Query 781 CAAGCTCATGAGTTACAGGGTGAAGAAGCTGAAGAACACACCTGTATATGTAAAGCCTCA 840
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 822 CAAGCTTATGAGTTACAGGGTGAAGAAGCTAAAGAACACACCTGTATATGTAAAACCTCA 881
Query 841 AATAACATCAGATTCGGGTACATGTCGAATTAGCGTGCTAGTGGGGATCAGAAACGACCC 900
||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||
Sbjct 882 AATAACATCAGATTCGGGTACATGTCGAATTAGCGTGCTAGTGGGAATCCGAAGCGATCC 941
Query 901 -GGGAAAGACGATTGAGTCCATAACCTTGAGTTTCCAGCTTCCTCATTGTGTTTCATCTG 959
|||||| || |||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 942 AGGGAAA-ACAATTGAGTCGATAACCTTGAGTTTCCAGCTTCCTCACTGTGTATCATCTG 1000
Query 960 CAGATCTCTCATCAAATCATGGAACTGTAACCATCCTCTCTAACAAGACATGTACATGGA 1019
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1001 CAGATCTCTCATCAAATCATGGAACTGTAACAATCCTCTCTAACAAGACATGTACATGGA 1060
Query 1020 CAATCGGGCGAATCCCAAAAGACAAGACTCCTTGTTTGTCGGGAACACTAACGCTGGAAA 1079
||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||
Sbjct 1061 CAATCGGGCGAATCCCAAAGGACAAAACTCCGTGTTTGTCGGGAACACTAGCGCTGGAAC 1120
Query 1080 C-GGGTTTAGAACGGCTTCATGTGTTTCCGACATTCAAACTCGGGTTCAAAATAATGGGC 1138
| ||||| |||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1121 CAGGGTT-AGAACGGCTTCACGTGTTTCCGACATTCAAACTCGGGTTTAAGATAATGGGC 1179
Query 1139 ATTGCTCTTTCTGGCCTTAGAATCGAAAAACTTGATCTTCAAACTATCCCTCCTCGTCTG 1198
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1180 ATTGCTCTTTCTGGCCTAAGAATCGAGAAACTTGATCTTCAAACTATCCCTCCTCGTTTG 1239
Query 1199 TACAAAGGGTTTCGTGCTCAGACACGCGCCGGTGAGTTTGATGTCAGATTGTAGCTTTCT 1258
||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||
Sbjct 1240 TACAAAGGGTTTCGTGCTCAGACACGCGCTGGTGAGTTCGATGTCAGGTTGTAGCTTTCT 1299
Query 1259 GGTACGGTCATGCC--G--G-TCAAAAGTCTTGACTTTGGGCACCTGTGAATTGTTTGTG 1313
|||||||||||| | | ||||||||||||||||||||| |||||||||||||||||
Sbjct 1300 AATACGGTCATGCCATGCCGGTCAAAAGTCTTGACTTTGGGCTCCTGTGAATTGTTTGTG 1359
Query 1314 CCAAATGGTTTTATACATCCAATGGTTTTT 1343
||||||||||||||||||||||||||||||
Sbjct 1360 CCAAATGGTTTTATACATCCAATGGTTTTT 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5