BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474822
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56630.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 715 0.0
AT5G42930.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 398 7e-110
> AT1G56630.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:21223593-21226943 REVERSE LENGTH=1458
Length=1458
Score = 715 bits (387), Expect = 0.0
Identities = 421/438 (96%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 619 TTAAAGGAATTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 678
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TTAAAGGAGTTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 1080
Query 679 TTGCCTTTCGACGACAAGACACTCATGTTCAAACATTTTGGGGACTGCCTTTACTGTAAC 738
|||||||| |||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 1081 TTGCCTTTTGACGACAAGACACTCATGTTCAAACATTTTGGGGGCTGCCTCTACTGTGAC 1140
Query 739 AGTTTCTACAAAGGAAAGGTGGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATATTT 798
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 AGTTTCTACAAAGGAAAGGTAGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATCTTT 1200
Query 799 TGGGTTATACCGAAGATATTAAACGCAGTGTGGGAGTTGATAAGGAGTTTCATCATATCT 858
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1201 TGGGTTATACCGAAGATAATAAACGCGGTGTGGGAGTTGATAAGGAGTTTCATCATATCT 1260
Query 859 TGTTGGCAAGGTAAAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGGCTTGTTGCA 918
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1261 TGTTGGCAAGGTAGAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGACTTGTCGCA 1320
Query 919 TTGTTGATTCCGGGACTTCCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTTTG 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTGTTGATTCCGGGACTTCCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTTTG 1380
Query 979 GGAAACTTTCCTCCTCACGTACCCGATTCTCAAAATTTACATGCTGATGACCTCAATGTT 1038
||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||||
Sbjct 1381 GGAAACTTTCCTCCTCAGGTACCTGATTCTCAAAATTTACCTGATGATGACCTCAATGTT 1440
Query 1039 TCCCTCTTGAGAAACTAA 1056
|||||||||||||||||
Sbjct 1441 GCCCTCTTGAGAAACTAA 1458
Score = 462 bits (250), Expect = 3e-129
Identities = 284/301 (94%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCAACCCGAAAACTACTTTGTTCTGGATCCGAGAGAAGCCACCGTCATGGATCTG 60
|||||||||||| |||| || |||||||| ||||||||||||||||| || | ||||||
Sbjct 1 ATGGTTCAACCCAAAAATTATTTTGTTCTTGATCCGAGAGAAGCCACGGTTACGGATCTT 60
Query 61 ATGCGGCTTCTCCTCTACTCGGATCTCGAGAATAGAAAGTTCGTTGATACTTCCGTAGAG 120
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATGCGTCTTCTCTTCTACTCGGATCTCGAGAATAGAAAGTTCGTTGATACTTCGGTAGAG 120
Query 121 AATCTTGAGAACCGTCTTTGCGAAATCGGGGGACGGTGGATTATTTTTGTATCCATCGTT 180
||||||||||| |||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 121 AATCTTGAGAATCGTCTTTGCGAATTCAGGGGACGGTGGATCATTTTTGTATCCATCGTT 180
Query 181 GTTCAGAAACTCCTGATTATCCTCAGGAAACCTCTCTCGTTCTTGGGATTCGCTCTTGGC 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTCAGAAACTCTTGATTATCCTCAGGAAACCTCTCTCGTTCTTGGGATTCGCTCTTGGC 240
Query 241 TTTTGGCTCAACCTTCCTTCTTCCAATGGTGGCTTCTTCAAGATTTTCCTAAATCTTGTC 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTTTGGCTCAACCTTCCTTCTTCCAATGGTGGCTTCTTCAAGATATTCCTAAATCTTGTC 300
Query 301 A 301
|
Sbjct 301 A 301
Score = 364 bits (197), Expect = 7e-100
Identities = 205/209 (98%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 304 GATTTTGATCAAACGAGGTCAACAGAGGTGATTGTTATAAGGGACACAAAAGAAAATTCG 363
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 538 GATTTTGATCAAACGAGGTCAACAGAGGTGATTGTTATAAGGGACACAAAAGACAATCCG 597
Query 364 AACCTTATCATCGTCAGTTTTAGAGGAACCGATCCTTTCAACGCCGATGATTGGTGTACA 423
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AACCTTATCGTCGTCAGTTTTAGAGGAACCGATCCTTTCAACGCCGATGATTGGTGTACA 657
Query 424 GACCTTGATCTCTCTTGGCACGACGTTATGAATGTGGGAAAGATCCACGGCGGATTCATG 483
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 GACCTTGATCTCTCTTGGCACAACGTTATGAATGTGGGAAAGATCCACGGCGGATTCATG 717
Query 484 AAAGCTTTAGGCCTTCCGAAAGAAGGATG 512
|||||||||||||||||||||||||||||
Sbjct 718 AAAGCTTTAGGCCTTCCGAAAGAAGGATG 746
Score = 165 bits (89), Expect = 8e-40
Identities = 101/107 (94%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 512 GCCTAGGTGGAGCCCTAGCGATCCTGTTCACAGCCGTATTAATGATGCATGATGAGAAGA 571
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 875 GCCTAGGTGGAGCCCTAGCGATCCTGTTCACAGCCGTGTTAATTATGCATGATGAGAAGG 934
Query 572 AAATGTTGGAGAGGCTTGAAGGAGTTTACACATTTGGTCAGCCTCGC 618
||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 935 AAATGTTGGAGAGACTTGAAGGAGTTTACACATTTGGGCAGCCACGC 981
> AT5G42930.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:17210546-17214220 REVERSE LENGTH=1664
Length=1664
Score = 398 bits (215), Expect = 7e-110
Identities = 322/374 (86%), Gaps = 6/374 (2%)
Strand=Plus/Plus
Query 620 TAAAGGAA-TTTGACGTGAAGTACAAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 678
|||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1084 TAAA-GAAGTTTGACGTGAAGTATGAAAGATATGTTTATTGCAACGACATGGTTCCTAGG 1142
Query 679 TTGCCTTTCGACGACAAGACACTCATGTTCAAACATTTTGGGG-ACTGCCTTTACTGTAA 737
||||||||||||||||| ||||||||||| ||||| ||||||| | |||||||||| | |
Sbjct 1143 TTGCCTTTCGACGACAAAACACTCATGTTTAAACACTTTGGGGCA-TGCCTTTACTATGA 1201
Query 738 CAGTTTCTACAAAGGAAAGGTGGAAGAAGAGGAGCCAAACAAAAACTACTTCAATATATT 797
||||||||| ||||||||||| || |||||||| ||||||||||||||||| ||| | |
Sbjct 1202 CAGTTTCTATAAAGGAAAGGTAGAGGAAGAGGAACCAAACAAAAACTACTTTAATCTCGT 1261
Query 798 TTGGGTTATACCGAAGATATTAAACGCAGTGTGGGAGTTGATAAGGAGTTTCATCATATC 857
|||||| |||| |||||| | || ||| |||||||||||||| | |||||| |||| |
Sbjct 1262 ATGGGTTTTACCAAAGATAATGAATGCACTGTGGGAGTTGATACGTAGTTTCGTCATGCC 1321
Query 858 TTGTTGGCAAGGTAAAGAATACAGAGAAGGATGGTTATTGACGTGTTTTAGGCTTGTTGC 917
|| |||| ||||| ||| | ||||||||||||||| || | |||||||||| |||||||
Sbjct 1322 TTATTGGAAAGGTGGAGAGTTCAGAGAAGGATGGTTCTTAAGGTGTTTTAGGGTTGTTGC 1381
Query 918 ATTGTTGATTCCGGGACTT-CCTGCTCATTTTCCTAATGAGTACGTCAATGTTGCTCTTT 976
|||||||||||| ||| || |||||||| || |||||||||||| |||||||| ||||||
Sbjct 1382 ATTGTTGATTCCTGGA-TTACCTGCTCACTTCCCTAATGAGTACATCAATGTTACTCTTT 1440
Query 977 TGGGAAACTTTCCT 990
| || |||| |||
Sbjct 1441 TAGGTGACTTACCT 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5