BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474828
Length=1691
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56660.1 | Symbols: | unknown protein; Has 665200 Blast hit... 1580 0.0
> AT1G56660.1 | Symbols: | unknown protein; Has 665200 Blast hits
to 205811 proteins in 4684 species: Archae - 3320; Bacteria
- 107592; Metazoa - 249086; Fungi - 76753; Plants - 38542;
Viruses - 3008; Other Eukaryotes - 186899 (source: NCBI BLink).
| chr1:21237888-21240558 FORWARD LENGTH=1821
Length=1821
Score = 1580 bits (855), Expect = 0.0
Identities = 1228/1397 (88%), Gaps = 69/1397 (5%)
Strand=Plus/Plus
Query 1 AAGACGCAAGAATTGGATCCAAAAGAAAAGGGAGAGAATGTTGAGGTGGAGATGGAAGTG 60
|||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 123 AAGACGCAGGAATTGGATCCAAAAGAGAAGGGGGAAAATGTTGAGGTGGAGATGGAAGTG 182
Query 61 AAAGCCAAA-TCAAGTGagaaggtaaaaacaaagaatggggaaaagagtggagggaaatc 119
||| |||| |||| ||||||||| ||| ||||||| | ||| ||||| | || |||||
Sbjct 183 -AAGGCAAAGTCAATTGAGAAGGTTAAAGCAAAGAAAGATGAAGAGAGTAGTGGAAAATC 241
Query 120 aaagaagaaaaaggaaaaagaaaagacaaagggcaagaaa-gat-gactcagaggtaaaa 177
||| ||||| |||||||||| ||||||||| ||| | | |||||||||||||||
Sbjct 242 ---CAAG---AAGGACAAAGAAAAGAAAAAGGGCAA-AAACG-TGGACTCAGAGGTAAAA 293
Query 178 gaagataaagatgacaaaCATGACAAGAAGAAAGATGGAAAAGTTGTCTCCAAGAAACAT 237
||||||||||||| ||||||| ||||||||||||||| | |||||||||||||||
Sbjct 294 GAAGATAAAGATG------ATGACAAAAAGAAAGATGGAAAAATGGTCTCCAAGAAACAT 347
Query 238 GAAGAAGGCCATGGAGATATGAAGGTTAAAGACAGCGATGTGAAAGTGGAAGAGCATGAG 297
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 348 GAAGAAGGCCATGGAGATCTGGAGGTTAAAGAGAGCGATGTGAAAGTGGAAGAGCATGAG 407
Query 298 AAGGAACACAAGAAGGGCAAAGAGAAGAAACACGAGGATGTATCAGAACGAAACGAGGAG 357
|||||||||||||||||||||||||||||||||||||| || | |||| ||| || |
Sbjct 408 AAGGAACACAAGAAGGGCAAAGAGAAGAAACACGAGGA-GT-T-AGAA-GAA--GA--A- 458
Query 358 TTagaagaaga-aaaggaaggtaaaaagaagaagaagaaagagaaggatgaatcaggtgc 416
| |||||| ||| ||| || ||||| || || || ||||||||||| || ||| |
Sbjct 459 --A-AAGAAGGTAAA--AAG--AAGAAGAATAA-AA-AA-GAGAAGGATGAGTCGGGTCC 508
Query 417 agagggaaaaaataagaaggcagataaagagaagaaaCATGAGGATGTATCACAACAAAA 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 509 AGAGGAAAAAAATAAGAAGGCAGATAAAGAGAAGAAACATGAGGATGTATCACAAGAAAA 568
Query 477 GGAGGAGTTAGAAGAGGAAGATGGTaaaaagaacaaaga-gaaagggaaggatgaatcag 535
||| |||||||||||||||||||||||||||||||| || ||||| ||| ||||||||||
Sbjct 569 GGAAGAGTTAGAAGAGGAAGATGGTAAAAAGAACAA-GAAGAAAGAGAAAGATGAATCAG 627
Query 536 gtacagaggagaaaaagaagaaaccagaaaaagaaaagaaacataaagaagaatccaagg 595
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||
Sbjct 628 GTACAGAGGAGAAAAAGAAGAAACCAAAAAAAGAAAAGAAACAAAAAGAAGAATCTAAGA 687
Query 596 gtaaggaagacaagaagctgaaggggaagaagggaaatggagagaaggatgagcct-gac 654
|||| |||||||| ||| ||||||| ||||||| ||| |||||||||| ||| ||| ||
Sbjct 688 GTAATGAAGACAAAAAGGTGAAGGGAAAGAAGGAAAAGGGAGAGAAGGGTGA-CCTTGAG 746
Query 655 aaagaagat-aa-agaa-aagaa-gaa--tgatgcaacagatcaagagatgaaagaaaaa 708
||||||||| || |||| ||||| ||| ||||| |||||||||||||||||||||||||
Sbjct 747 AAAGAAGATGAAGAGAAGAAGAAAGAACATGATGAAACAGATCAAGAGATGAAAGAAAAA 806
Query 709 gatggtaagaagaacaagaagaaagagaaagatgaatcaggtacagaggaaaaaaagaaa 768
||| |||| |||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 807 GATAGTAAAAAGAACAAGAAGAAAGAGAAAGATGAATCATGTGCGGAGGAAAAAAAGAAG 866
Query 769 aagcaagagaaagagaacaaacagaaagacgaat-tgacggataaagaagacaagaagct 827
|||| || |||||||| ||| |||||||||||| | || || || ||||||||||||||
Sbjct 867 AAGCCCGATAAAGAGAAGAAAGAGAAAGACGAATCT-ACTGAGAAGGAAGACAAGAAGCT 925
Query 828 gaaggg---gaa-g-aa-gg-at-ga-gcatgagaaagaagacgaaggaaagaaga--aa 876
|||||| ||| | || || | || || ||| |||||||| ||||||||||||| ||
Sbjct 926 GAAGGGAAAGAAAGGAAAGGGAGAGAAGCCTGAAAAAGAAGATGAAGGAAAGAAGACGAA 985
Query 877 -gaacatgatgcaacagatcatgagatgaaagaagaagaagtagaacataaggagggaaa 935
||||||||||||||||| || |||||| | || |||| | || ||||||||||||||
Sbjct 986 AGAACATGATGCAACAGAGCAAGAGATGGATGATGAAGCCGCCGATCATAAGGAGGGAAA 1045
Query 936 gaaaaagaagaataaagataaggcaaagaagaaggaaaccg--at-ga-ga--tatgtga 989
|||||||||||||||||||||||| |||||||||||||||| || || || |||||||
Sbjct 1046 GAAAAAGAAGAATAAAGATAAGGCGAAGAAGAAGGAAACCGTCATCGATGAGGTATGTGA 1105
Query 990 gaaagaaacaaaagataaagatgaggatgaaggagaaaccaagcagaaaaagaataagaa 1049
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1106 GAAAGAAACAAAAGACAAAGATGATGATGAAGGAGAAACCAAGCAGAAAAAGAATAAGAA 1165
Query 1050 aaaggagaagaagaacgaaaagggcgaaaaagatgaaaaaaaagacaagaagaaggagaa 1109
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1166 AAAGGAGAAGAAGAGCGAAAAGGGCGAAAAAGATGTAAAGGAAGACAAGAAGAAGGAGAA 1225
Query 1110 aCCCTTTGAAACTGAAGTGATATCaagagatataaaattagaagaatcagaagctgagaa 1169
||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1226 TCCCCTTGAAACTGAAGTGATGTCAAGAGATATAAAATTAGAAGAACCAGAAGCTGAGAA 1285
Query 1170 gaaggaagaagatgacaatgaagagaagaataaatctaaagaagaaggcggtgagagtga 1229
||||||||||||||| | |||||||||||| |||||||||| |||||| |||||||||||
Sbjct 1286 GAAGGAAGAAGATGATACTGAAGAGAAGAAGAAATCTAAAGTAGAAGGGGGTGAGAGTGA 1345
Query 1230 agaggggaagaaaaagaagaagaaagataaaaagaagaacaagaagaaagatacaaagga 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 AGAGGGGAAGAAAAAGAAGAAGAAAGATAAAAAGAAGAACAAGAAGAAAGATACAAAGGA 1405
Query 1290 aacgaaaaggacagaggatgaagaagagaagaaagaTCATACTAAAGACGTCAAAATAga 1349
| |||||| ||| ||||| |||||||||||||||||| || |||| ||||| ||||||||
Sbjct 1406 ACCGAAAATGACGGAGGACGAAGAAGAGAAGAAAGATGATTCTAAGGACGTTAAAATAGA 1465
Query 1350 agggtcaaaagctgaag 1366
||||||||||||| |||
Sbjct 1466 AGGGTCAAAAGCT-AAG 1481
Score = 385 bits (208), Expect = 9e-106
Identities = 284/317 (90%), Gaps = 20/317 (6%)
Strand=Plus/Plus
Query 1394 caaaaactaaggaagaaaagaaagacaaagatgtgaagaagaagaagGGTGGTAATGACA 1453
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1471 CAAAAGCTAAGGAAGAAAAGAAAGACAAAGATGTGAAGAAAAAGAAGGGTGGTAATGACA 1530
Query 1454 TCGGTAAGCTGAAAACGAAGTTGGCGAAGATCGATGAAAAAATAGGAGCCTTAATGGAGG 1513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 TCGGTAAGCTGAAAACGAAGTTGGCGAAGATCGATGAAAAAATAGGAGCCTTAATGGAGG 1590
Query 1514 AGAAGGCTGAAATCGAGAATCAGATTAAAGACGCAGAGGGAGAGCAATGATGTGA--A-- 1569
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1591 AGAAGGCAGAAATCGAGAATCAGATTAAAGACGCAGAGGGAGAGCAATGATGTGATGATT 1650
Query 1570 G---A---TA------TG--GG-AGCGGCGTAATGTTATGTAACTGAACTTAATAATATG 1614
| | || || || ||| || ||||||||||||||||||||| ||||||||
Sbjct 1651 GTGGAACATAAAAAAATGATGGGAGCAGCTTAATGTTATGTAACTGAACTTGATAATATG 1710
Query 1615 GACTTAGCAACATCCATAGAGAAACTGAAGGCTACATGTTTCTTGGTACAGTTGCACTTA 1674
||||| |||||||||| |||||| || |||||||||||| |||||||||| |||||||||
Sbjct 1711 GACTTGGCAACATCCACAGAGAAGCT-AAGGCTACATGTCTCTTGGTACATTTGCACTTA 1769
Query 1675 ACTTCAATTTTTCTTTT 1691
|||| ||||||| ||||
Sbjct 1770 ACTTAAATTTTTTTTTT 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83583907425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5