BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474829
Length=1173
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56670.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1757 0.0
AT3G62280.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 69.4 7e-11
> AT1G56670.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr1:21241673-21244047 FORWARD LENGTH=1219
Length=1219
Score = 1757 bits (951), Expect = 0.0
Identities = 1102/1176 (94%), Gaps = 6/1176 (1%)
Strand=Plus/Plus
Query 1 AATGGCCACTCTCTTTCTCTACTCTAATACATTCTCCATCTTCTTCGTTACACTGGTGTC 60
|||||| |||||||||||||||||||| ||||| ||| ||||||| ||||||| |||||
Sbjct 15 AATGGCTACTCTCTTTCTCTACTCTAACACATTTTCCTTCTTCTTTATTACACTCGTGTC 74
Query 61 ACTACCTCTTCTCATTCTCCGGCAACCCACT-GCGGCGGCGAGTTGTACAACTCCGCCGG 119
|| ||||||| ||||||||||||||| || | |||||||||||||||| ||| |||||
Sbjct 75 GTTAGCTCTTCTAATTCTCCGGCAACCCTCTAG-GGCGGCGAGTTGTACAGCTCGGCCGG 133
Query 120 TGATTTTTAACTTTGGAGATTCTAATTCAGACACAGGAGGACTTGTTGCTGGACTTGGTT 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 134 TGATTTTTAACTTTGGAGATTCTAATTCAGATACAGGAGGACTTGTTGCTGGACTTGGTT 193
Query 180 ACCCTGTTGGCTTCCCAAACGGACGCTTATTTTTCCGGCGATCCACCGGTCGTTTGTCTG 239
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 194 ACCCCATTGGCTTCCCAAATGGACGCTTATTTTTCCGGCGATCTACCGGTCGTTTGTCCG 253
Query 240 ACGGACGTCTTCTCATTGATTTTTTATGCCAGAGTTTGAATACAAGTCTTTTGAGGCCAT 299
|||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||
Sbjct 254 ACGGACGTCTTCTCATCGATTTCCTATGTCAGAGTTTGAATACAAGTCTTTTGAGGCCAT 313
Query 300 ACTTAGATTCATTAGGTGGAACAAGGTTTCAAAATGGTGCAAATTTTGCAGTTGTTGGAT 359
||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 314 ACTTAGATTCATTGGGTAGAACAAGGTTTCAAAATGGTGCAAATTTTGCAATTGCTGGAT 373
Query 360 CCTCTACTCTCCCCAAAAATGTCCCTTTCTCGCTCAACATTCAGCTCATGCAGTTCAGCC 419
|| | ||||| |||||||| |||||||||||||| ||||||||| ||| |||||||||||
Sbjct 374 CCCCAACTCTTCCCAAAAACGTCCCTTTCTCGCTTAACATTCAGGTCAAGCAGTTCAGCC 433
Query 420 ATTTCAAATCCCGATCACTTGAGCTCGCATCTAGTACAAATTCATTAAAGGGCATGTTCA 479
||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||
Sbjct 434 ATTTCAAATCCCGATCACTCGAGCTCGCTTCTAGTTCAAATTCATTAAAGGGCATGTTCA 493
Query 480 TAAGCAATGATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGACATTG 539
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TAAGCAACAATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGACATTG 553
Query 540 CTCATTCTTTCGCTAGAGGCAACTCGTATTCTCAGACGGTTAAGTTGATTCCACAAATTA 599
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 CGCGTTCATTCGCTAGAGGCAACTCGTATTCTCAGACGGTTAAGTTGATTCCACAAATTA 613
Query 600 TTACCGAGATAAAAAGCGGCATAAAGAGATTGTATGATGAAGGAGGAAGGAGATTCTGGA 659
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TTACGGAAATAAAAAGCAGCATAAAGAGATTGTATGATGAAGGAGGAAGGAGATTCTGGA 673
Query 660 TTCACAACACCGGTCCATTGGGTTGTCTACCTCAAAAACTCTCTATGGTTAAGAGCAAAG 719
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 674 TTCACAACACTGGTCCATTGGGTTGTCTACCTCAAAAACTTTCTATGGTTAAGAGCAAAG 733
Query 720 ATCTCGACCAGCACGGTTGCTTAGCT-AGTTACAACTCGGCAGCAAATCTGTTTAACCAA 778
|||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||
Sbjct 734 ATCTCGACCAGCACGGTTGCTTAG-TCAGTTACAACTCGGCAGCAACTCTGTTTAACCAA 792
Query 779 GGATTGGATCATATGTGTGAGGAGCTGAGGACCAAACTGA-GAGATGCCACCATAATATA 837
||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||
Sbjct 793 GGATTGGATCATATGTGTGAGGAGCTGAGGACCGAACT-ACGAGATGCCACCATAATCTA 851
Query 838 TATCGACAGATACGCTATCAAATACAATCTCATTGCAAACTCCAACCAATACGGTTTTGA 897
||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 852 TATTGACATATACGCTATCAAATACAGTCTTATTGCAAACTCCAACCAATACGGTTTTAA 911
Query 898 GAGACCGTTAATGGCGTGTTGCGGATACGGAGGGGCTCCATACAACTACAATGTGAACAT 957
||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 912 GAGTCCGTTGATGGCGTGTTGTGGATACGGAGGGACTCCATACAACTACAATGTGAAGAT 971
Query 958 AACATGTGGGCACAAAGGCTCTAATGTATGTGAGGAAGGGTCGCGTTACATAAGCTGGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 972 AACATGTGGGCACAAAGGCTCTAATGTATGTGAGGAAGGGTCGCGTTTCATAAGCTGGGA 1031
Query 1018 TGGGATTCATTACACCGAGACAGCTAATGCCATTGTAGCCATGAAAGTTCTTTCAATGCA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TGGGATTCATTACACCGAGACAGCTAATGCCATTGTAGCCATGAAAGTTCTTTCAATGCA 1091
Query 1078 TTACTCTAAGCCACCAACTCCGTTCGATTTCTTCTGCCGTCGCTAAGAACCAACTTTGTT 1137
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 1092 TTACTCTAAGCCACCAACTCCGTTCCATTTCTTCTGCCGTCGCTAAGAACCAAATTTATT 1151
Query 1138 ATTCTTGTGCTTATTTCTAACTTGGAAGATTCTTTT 1173
|||||| ||||||||||||||||||| |||| ||||
Sbjct 1152 ATTCTTTTGCTTATTTCTAACTTGGACGATTTTTTT 1187
> AT3G62280.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:23049423-23051152 REVERSE LENGTH=1195
Length=1195
Score = 69.4 bits (37), Expect = 7e-11
Identities = 43/46 (93%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 489 ATGGATTCAAAAACGCGTTGTACATGATCGATATTGGACAGAACGA 534
||||||| | |||||||||||||||||||||||||||||| |||||
Sbjct 497 ATGGATTTAGAAACGCGTTGTACATGATCGATATTGGACAAAACGA 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57580025115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5