BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474834
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56710.1 | Symbols: | Pectin lyase-like superfamily protein... 1997 0.0
> AT1G56710.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:21258008-21259933 REVERSE LENGTH=1514
Length=1514
Score = 1997 bits (1081), Expect = 0.0
Identities = 1268/1360 (93%), Gaps = 5/1360 (0%)
Strand=Plus/Plus
Query 1 AAAAATGGCATTACCTAATTCACTCTTCTATACAATCTTCTTCATCTTATTCTCATCGAT 60
||||||| |||||||||||||||||||||||||| | ||||| |||||||||||| ||||
Sbjct 8 AAAAATGTCATTACCTAATTCACTCTTCTATACATTTTTCTTGATCTTATTCTCAACGAT 67
Query 61 TCCAATTGCTCACAA-CATGTATCTAAGCCCATCACCGGCTCCAAATCCGGCTTACGATG 119
|| ||||||||| || ||| ||| |||| ||||||||||||||||||||||||||| |||
Sbjct 68 TCGAATTGCTCA-AAGCATATATTTAAGTCCATCACCGGCTCCAAATCCGGCTTACAATG 126
Query 120 ATAACGACAGTATTGGGCCAACCGTCTTCGACGTGACTTCCTTTGGAGCCATCGGAGATT 179
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 127 ATAACGACAATATTGCGCCAACCGTCTTCGACGTGACTTCATTTGGAGCCATCGGCGATT 186
Query 180 G-TGCGACCGACGACACATCAGCATTCAAGATGGCATGGGACGTTGCATGTATGAGCACA 238
| | ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||
Sbjct 187 GCT-CGACCGACGACACGTCAGCATTCAAAATGGCATGGGACGCTGCATGTATGAGTACA 245
Query 239 GGGTCTAAGTCAGCCCTGCTTCTTGTCCCTTACACCTTCTGTTTCTTGGTCAAGCCAACC 298
||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 246 GGGCCTAAGTCAGCCCTGCTTCTTGTCCCTTACACTTTCTGTTTCTTGGTTAAGCCAACC 305
Query 299 ACCTTCAATGGTCCTTGTAGAACCCACCTTGTGCTACAAATCGACGGGTTCATTCTGTCG 358
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||| | |||
Sbjct 306 ACCTTCAATGGTCCTTGCAGAACAAATCTTGTACTACAAATCGACGGGTTCATTGTATCG 365
Query 359 CCGGATGGACCGAGGTCATGGCCGTCGAATTACCAGAGGCAATGGATGATGTTTTACAGA 418
|| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 366 CCCGATGGACCGAGGTCATGGCCATCGAACTACCAGAGGCAGTGGATGATGTTTTACAGA 425
Query 419 GTGAATGGATTATCAATTCAAGGCTCAGGTTTTATCAACGGCCGTGGCCAGAAATGGTGG 478
|| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||
Sbjct 426 GTTAATGGATTATCAATTCAAGGCTCTGGTGTTATCAACGGCCGTGGTCAGAAATGGTGG 485
Query 479 AACCTTCCTTGCAAACCTCACAAGGGCATTAACGGAACGACTCAACCCGGTCCTTGTGAC 538
|| |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 486 AATCTTCCTTGCAAACCACACAAGGGCCTTAACGGAACGACTCAAACCGGTCCTTGTGAC 545
Query 539 AGTCCTGTAGCGATTAGGGTATTTCAGAGCTCAAAAGTGAGAATCCAAGGGCTTAACTTC 598
||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 546 AGTCCAGTAGCGATTAGGTTATTTCAGAGCTCAAAAGTAAGAATCCAAGGGATTAACTTC 605
Query 599 ATGAACAGCGCCCAGTTCCATGTAAGGTTTGATAACTGCAGTGACGTAGTTGTTGATTCC 658
||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 606 ATGAACAGCGCTCAGTTTCATGTAAGGTTTGACAACTGCAGTGACGTCGTGGTTGATTCC 665
Query 659 GTGACAATCAAGGCACCAGCTTCTAGTCCTAACACAGATGGGATCCACATTGAGAATACA 718
|||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 666 GTGATAATCAAGGCACCAGCTTCTAGTCCTAACACTGATGGGATCCATATTGAGAATACA 725
Query 719 CATAACGTTCAGATTCGCAATTCCGTGATTTCCAACGGAGATGATTGTATTTCAATTGGA 778
|| || |||||||||||||||||| |||||||||||||||||||||||||||| || |||
Sbjct 726 CACAATGTTCAGATTCGCAATTCCATGATTTCCAACGGAGATGATTGTATTTCTATCGGA 785
Query 779 GGCGGCTGCTTTAATGTCGATATTCAGAATGTTACGTGTGGTCCAAGCCATGGGATTAGC 838
| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 786 GCCGGCTGCTTTAATGTCGATATTAAGAATGTTACGTGCGGTCCAAGCCATGGGATTAGC 845
Query 839 ATAGGTAGCCTCGGAGTCCACAACTCGCAGGCCTATGTCTCGAACATAACAGTGACAAAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 ATAGGTAGCCTCGGAGTCCACAACTCGCAGGCCTATGTCTCGAACATAACAGTGACAAAC 905
Query 899 TCAACCATATGGAACTCAGACAACGGTGTTCGGATCAAGACATGGCAAGGAGGGTCAGGC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TCAACCATATGGAACTCAGACAACGGTGTTCGGATCAAGACATGGCAAGGAGGGTCAGGC 965
Query 959 TCGGTTTCAAGAATTGTGTACAGTAACATATTGATGGTGAACGTTCGTAACCCTATAATG 1018
||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||
Sbjct 966 TCGGTTTCAAGAATTGTGTTCAGTAACATTTTGATGGTCAACGTTCGTAACCCTATAATG 1025
Query 1019 ATAGACCAGTACTACTGCCAAACCAATAACTGTGCTAACCAAACCAGCGCAGTCATAATT 1078
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1026 ATAGACCAGTACTACTGTCAAACCAATAACTGTGCTAACCAAACCAGCGCAGTCATTATA 1085
Query 1079 AGCGATGTTCTGTATGCAAATATCAAAGGGACTTACGACCTGAGAAGCCCACCGATGCAT 1138
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1086 AGCGATGTTCTCTATGCAAATATCAAAGGGACTTACGACCTGAGAAGCCCACCCATACAT 1145
Query 1139 TTTGGTTGCAGCGACTCTGTCCCCTGTACCAACCTGAGACTCGCGGATGTTGACCTGTTT 1198
||||||||||||||||||||||||||||| ||||| | |||| |||| || || ||||||
Sbjct 1146 TTTGGTTGCAGCGACTCTGTCCCCTGTACTAACCTCACACTCACGGAAGTCGATCTGTTT 1205
Query 1199 CCTTCCAAAGGCCAGCATTTGGAAAACCCGTTCTGCTGGAACGCATATGGAAGCACGCAG 1258
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||
Sbjct 1206 CCTTCCAAAGGCCAGCATTTGGAAAACCCGTTCTGCTGGAACGCGTATGGAAGCATGAAG 1265
Query 1259 ATTACAGTGCCACCTGTTTATTGTCTGCTTGATGCACCTCCGGACTTCTAACAGAAGAAG 1318
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 1266 ATTACAGTACCACCTGTTTATTGTCTACTCGATGCACCTCCGGACTTCTAACAGAAAAAG 1325
Query 1319 ATGTGTTCAACGCTGTTCACCAACTTGTATTT-GATTCAG 1357
|| |||||| ||| ||||||||||||||||| |||||||
Sbjct 1326 ATATGTTCATCGCAGTTCACCAACTTGTATTCAGATTCAG 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5