BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474837
Length=2056
Score E
Sequences producing significant alignments: (Bits) Value
AT1G56720.1 | Symbols: | Protein kinase superfamily protein | ... 2532 0.0
> AT1G56720.1 | Symbols: | Protein kinase superfamily protein
| chr1:21263420-21265620 REVERSE LENGTH=1750
Length=1750
Score = 2532 bits (1371), Expect = 0.0
Identities = 1605/1715 (94%), Gaps = 27/1715 (2%)
Strand=Plus/Plus
Query 356 AGTTTAGGAAAAAATGGGAGGTGACTTGAAAAGCCAGCTATCTAGAGAGAGTCATGTCTT 415
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 49 AGTTTAGGAAGAAATGGGAGGTGACTTGAAAAGCCAGCTATCTAGAGAGAGCCATGTGTT 108
Query 416 TGGACTTAAGGTTTGGGAAGTAATTGGTATAGCTGTTGCATTGCTGACCATAGTC-ATCC 474
|||||||||||| |||||||||||||||||||||||||||||||| | ||||| | ||||
Sbjct 109 TGGACTTAAGGTGTGGGAAGTAATTGGTATAGCTGTTGCATTGCTCATCATAG-CTATCC 167
Query 475 TCTCTGTTCTTTCGTTTTGTCTTACTTCGAAAAAGAAGTCAAGAAGATCGAAAACCGGTC 534
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 168 TCTCTGTTCTTTCGTGTTGTCTTACTTCGAAAAAGAAATCAAGAAGATCGAAAACCGGTC 227
Query 535 TTCCCGTTATCCAAACTCCTCCGGTGGTCTCCAAGGAGATCAGAGAAGTGAGAGTTGAGC 594
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 228 TTCCGGTTATCCAAACTCCTCCGGTGGTCTCCAAAGAGATCAGAGAAGTGAGAGTTGAGC 287
Query 595 ATGTCTCAGCAAGTAACTTTGCTCCTGGTGAAGGCATTCTTCTTACAATTCAGGACAAAA 654
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 288 ATGTCTCAGCTAGTAACTTTGCTCCTGGTGAAGGCATTCTTCTAACAATTCAGGACAAAA 347
Query 655 ACAACAAAGACTCAGAAAAAGTCATGGTTCATTTGGATATGAGGAAGAAGAGAAGTAGTA 714
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 ATAACAAAGACTCAGAAAAAGTCATGGTTCATTTGGATATGAGGAAGAAGAGAAGTAGTA 407
Query 715 GTGGCCGGTCAGGCTCGTTTCATCATTTAGAGATCATAGATAAACATTCTGAGTCAGCCG 774
||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |
Sbjct 408 GTGGCCGGTCAGGGTCGTTTCATCATTTAGAGATCATAGATAAACATTCTGACTCTGCTG 467
Query 775 AAGAAGTTTCTGCTTCTTCATCATTGTATAACATTGCAACTCCATCACCATTGTCTGGTT 834
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 468 AAGAAGTTTCTGCTTCTTCATCATTGTATAATATTGCAACTCCATCTCCATTGTCTGGTT 527
Query 835 TGCCTGAGTCTCACCTTGGTTGGGGACACTGGTTTACACTCAGAGATCTTGAAGTAGCAA 894
||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 528 TGCCTGAATCTCACCTTGGTTGGGGACACTGGTTTACTTTGAGAGATCTTGAAACAGCAA 587
Query 895 CTAATAGATTCTC-AAAGGAGAATGTGATTGGTGAAGGCGGTTACGGCGTTGTCTACAGA 953
|||| |||||||| |||| ||||||| || ||||||||||||||||| ||||||||||||
Sbjct 588 CTAACAGATTCTCTAAAG-AGAATGTTATAGGTGAAGGCGGTTACGGTGTTGTCTACAGA 646
Query 954 GGAGAGTTGCTCAATGGAACTCCTGTTGCAGTTAAAAAGATTCTTAATCAGTTGGGACAA 1013
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 647 GGAGAGTTAATGAATGGAACTCCTGTTGCAGTTAAAAAGATTCTTAACCAGTTGGGACAA 706
Query 1014 GCTGAGAAAGAGTTTCGAGTCGAGGTTGATGCTATCGGTCATGTGCGTCACAAGAACTTG 1073
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 707 GCTGAGAAAGAGTTTCGAGTCGAGGTTGATGCTATCGGTCATGTGCGGCACAAGAACTTG 766
Query 1074 GTCCGGCTTCTTGGTTACTGCATTGAAGGCACACACAGGATATTGGTTTACGAGTATGTG 1133
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 767 GTTCGGCTTCTTGGTTACTGCATTGAAGGCACACACAGGATATTGGTTTACGAATATGTG 826
Query 1134 AATAATGGAAACTTAGAACAATGGCTTCACGGAGCAATGAGACAACATGGATATCTAACT 1193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 827 AATAATGGAAACTTAGAACAATGGCTTCATGGAGCAATGAGACAACATGGATATCTAACT 886
Query 1194 TGGGAAGCTAGAATGAAGGTTCTCG-TCGGCACATCGAAAGCTCTTGCATATCTCCATGA 1252
|||||||| || ||||||||||| | |||||||||| ||||||||||||||||| |||||
Sbjct 887 TGGGAAGCAAGGATGAAGGTTCT-GATCGGCACATCAAAAGCTCTTGCATATCTGCATGA 945
Query 1253 AGCAATAGAGCCAAAAGTAGTGCACAGAGACATCAAGTCAAGCAACATACTAATCAACGA 1312
|||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 946 AGCAATTGAGCCAAAAGTAGTGCATAGAGACATCAAGTCAAGCAACATTCTGATCAATGA 1005
Query 1313 CGAATTCAATGCAAAGGTTTCAGATTTTGGCCTTGCAAAGTTGCTTGGCGCTGGGAAAAG 1372
||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1006 CGAATTCAACGCAAAGGTTTCAGATTTTGGCCTTGCTAAGTTGCTTGGTGCTGGAAAAAG 1065
Query 1373 CCATGTGACAACTCGAGTGATGGGAACATTTGGGTACGTTGCTCCCGAATATGCAAACAC 1432
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1066 CCATGTGACAACTCGAGTGATGGGAACATTTGGGTACGTTGCTCCTGAATATGCAAACTC 1125
Query 1433 AGGGCTGTTAAATGAAAAGAGTGATGTCTACAGCTTCGGTGTTGTTCTCTTAGAAGCAAT 1492
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1126 AGGGTTGTTAAATGAAAAGAGTGATGTCTACAGCTTTGGTGTTGTTCTCTTAGAAGCAAT 1185
Query 1493 CACAGGACGAGATCCTGTGGATTATGGCCGTCCTGCTCATGAGGTGAACCTAGTAGACTG 1552
|||||||||||| ||||||||||| || |||||||||||||||||||| ||||| |||||
Sbjct 1186 CACAGGACGAGACCCTGTGGATTACGGACGTCCTGCTCATGAGGTGAATCTAGTGGACTG 1245
Query 1553 GTTGAAGATGATGGTTGGAACGAGACGATCAGAGGAAGTAGTGGATCCAAACATAGAAGT 1612
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1246 GTTGAAGATGATGGTTGGGACAAGACGATCAGAGGAAGTAGTGGATCCAAACATAGAAGT 1305
Query 1613 AAAGCCACCAACAAGGTCATTAAAACGAGCCCTTTTGACGGCTCTAAGATGCGTTGATCC 1672
|||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct 1306 GAAGCCACCAACAAGGTCACTGAAACGAGCTCTTTTGACGGCTCTAAGATGTGTTGATCC 1365
Query 1673 AGATTCGGACAAACGGCCGAAAATGAGCCAAGTTGTACGTATGCTTGAGTCTGAAGAATA 1732
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1366 AGATTCGGATAAGCGGCCGAAGATGAGCCAAGTTGTACGTATGCTTGAGTCTGAAGAATA 1425
Query 1733 CCCAATTCCAAGAGAGGACCGAAGGCGTCCTAGAACGCGTGAAGGGAGTATGGAGATAAA 1792
||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1426 CCCCATTCCAAGAGAGGACCGAAGGCGTTCTAGAACGCGAGAAGGGAGTATGGAGATAAA 1485
Query 1793 CTCAGACACTGACATGAGTACTCCAGTTTCACGATCACAGAGCAAGAGACAATAATCTGA 1852
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1486 CTCAGACACTGACATGAGTACTCCAGTTTCAAGATCACAGAGCAAGAGACAATAAT-T-- 1542
Query 1853 GTAATTTATCAATCTGCGTAAGCTTTCAACGCATTTCATGATTATGAGCTATTCTTTGAA 1912
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1543 -TA-T----CAATCTGCGTAAGCTTTCAACGCGTTTCATGATTATGAGCTATTCTTTGAA 1596
Query 1913 CTTGTTCTTTTGCATTTTCTGttt-ttt-ttttCTTT-G------AATTGAGATGAGTAG 1963
||||||||| |||||||||||||| ||| |||| ||| | |||||||||||||||
Sbjct 1597 CTTGTTCTTATGCATTTTCTGTTTGTTTGTTTTTTTTTGGTTTTGAATTGAGATGAGTAG 1656
Query 1964 AGGCCATATAGGATTGTTTGTACATG-GAACTTGG-TTTGTATTTAGAGCTCCTACATCA 2021
|| ||||| |||||||||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct 1657 AGACCATAGAGGATTGTTTGTACATATGAACT-GGATTTGTGTTTAGAGCTCCTACATCA 1715
Query 2022 AAATAATATATTGTTGTGTACAGTATTATTGTATC 2056
||||||||||||| ||||||||||| ||||| |||
Sbjct 1716 AAATAATATATTGGTGTGTACAGTACTATTGCATC 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101907106350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5