BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474841
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57565.1 | Symbols: | SWI-SNF-related chromatin binding pro... 669 0.0
AT1G57580.1 | Symbols: | F-box family protein | chr1:21325079-... 610 4e-174
> AT1G57565.1 | Symbols: | SWI-SNF-related chromatin binding protein
| chr1:21319635-21320213 FORWARD LENGTH=579
Length=579
Score = 669 bits (362), Expect = 0.0
Identities = 476/529 (90%), Gaps = 15/529 (3%)
Strand=Plus/Plus
Query 1 ATGAAAAAACCTGTTTATATGAAGGGAGCTCTTCACTGGCTAAGAAATGACGGATCTATC 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAAAAACCTGTTTATATGAAGGGAGGTCTTCACTGGCTAAGAAATGACGGAGCTATC 60
Query 61 GTAGCTTTCAACCCTAAAACAGAGAAAGCACGACTGATTC-CGATCAGATTCCCCAAAGA 119
||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 61 GTAGCTTTCAACCCTGAAACAGAGAAAGCACGACTGA-TCTCGATCAGATTCCCCAAAGA 119
Query 120 ACTTTGTGT-TAAAACGTTGTTCACAGCCGCAGATAATAATTTAACCTTGATATCGGCGA 178
||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 120 ACTTTGT-TCTAAAACGTTGTTCACAGCCGCAGATAACAATTTAATCTTGATATCGGCGA 178
Query 179 CGGAAGAA-TTTGTTTACGTTTATGCACTCGAGAACATTCTTAATGATCCCAAGTGGGTC 237
|||||||| | | |||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 179 CGGAAGAAGTCT-TTTACGTTTATGCAGTAGAGAACATTCTTACTGATCCCAAGTGGGTC 237
Query 238 CTCGTGAAGAAAATCCGGAACGGAATACTGGACGAGAAGAGGTTATATAGTTGGGGCCTA 297
|| ||||| ||||||||||||| ||||||||||||||| | ||||||||||| ||
Sbjct 238 GTCTTGAAGCAAATCCGGAACGGGGTACTGGACGAGAAGATGCTATATAGTTGGTACCCG 297
Query 298 GAGGCTTACGATGGAAAGTGTTTAGTGTTGAAGGAGACAATGTTGAAGAAGGACGATTAC 357
|||||||||||||||||||||||| || || ||| || || |||||||||||| |||||
Sbjct 298 GAGGCTTACGATGGAAAGTGTTTAATGCTG-AGG-GA-GATATTGAAGAAGGACCATTAC 354
Query 358 AAGCAAGTGCTTCGTGGGTACGACCTGAGAGCTAATAAGTGGGAAGTCATAGGTTCGATT 417
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AAGCAAGTGCTTCATGGGTACGACCTGAGAGCTAATAAGTGGGAAGTCATAGGTTCGATT 414
Query 418 CCAAGGTGGTGCACTT-ATGCTATAGACTTTTATCAGTTTAAACCGTCGTCGTCTTCGGT 476
||| |||||| ||||| | ||| |||||||||||||||||| |||||| | |||||||||
Sbjct 415 CCAGGGTGGTACACTTCA-GCTCTAGACTTTTATCAGTTTACACCGTCTTTGTCTTCGGT 473
Query 477 GATAGGACTTGATGACAAAGAGGGGGAATTAAGAGATATTGGCTTGTGA 525
||||||| ||||| ||| |||| |||| || | |||||||||||||
Sbjct 474 AATAGGACCTGATGCCAAGGAGGAGGAAG-AA-A--TATTGGCTTGTGA 518
> AT1G57580.1 | Symbols: | F-box family protein | chr1:21325079-21326252
FORWARD LENGTH=1041
Length=1041
Score = 610 bits (330), Expect = 4e-174
Identities = 461/520 (89%), Gaps = 26/520 (5%)
Strand=Plus/Plus
Query 23 AGGGAGCTCTTCACTGGCTAAGAAATGACGGATCTATCGTAGCTTTCAACCCTAAAA-CA 81
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 473 AGGGAGCTGTTCACTGGCTAAGAAATGACGGATCTATCGTAGCTTTCAACC-TAAAAACA 531
Query 82 GAGAAAGCACGACTGATTCCGATCAGATTCCCCAAAGAACTTTGTGTTAAAA-CGTTGTT 140
|||||||||||||| |||||||| ||||||||||||||||||||| |||||| |||||||
Sbjct 532 GAGAAAGCACGACTAATTCCGATTAGATTCCCCAAAGAACTTTGT-TTAAAAACGTTGTT 590
Query 141 CACAGCCGCAGATAATAATTTAACCTTGATATCGGCGACGGAAGAATTTGTTTACGTTTA 200
|||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 591 CACAGCCGTAGATAATAATTTAACCTTGATATCGGCGACGGAAGAAGTCATTTACGTTTA 650
Query 201 TGCACT-CGAGAACATTCTTAATGATCCCAAGTGGGTCCTCGTGAAGAAAATCCGGAACG 259
||| || | | |||||||||| ||||||||||||||||||||||||| |||| |||||||
Sbjct 651 TGC-CTTCCATAACATTCTTAGTGATCCCAAGTGGGTCCTCGTGAAGCAAATTCGGAACG 709
Query 260 GAATACTGGACGAGAAGAGGTTATATAGTTGGGGCCTAGAGGCTTACGATGGAAAGTGTT 319
| ||||||||||||||||| ||||||||||| | | ||||||||||||||||||| ||
Sbjct 710 GGGTACTGGACGAGAAGAGGCTATATAGTTGGTACGTGGAGGCTTACGATGGAAAGTCTT 769
Query 320 TAGTGTTGAAGGAGACAATGTTGAAGAAGGACGATTA---CAAGCA----A-GT--G--C 367
||||||||| ||||||||| |||||||||||| |||| |||||| | | | |
Sbjct 770 TAGTGTTGAGGGAGACAATATTGAAGAAGGACTATTATAACAAGCATCTGAAGCAAGTAC 829
Query 368 TTCGTGGGTACGACCTGAGAGCTAATAAGTGGGAAGTCATAGGTTCGATTCCA-AGGTGG 426
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 830 TTCATGGGTACGACCTGAGAGCTAATAAGTGGGAAGTCATAGGTTCGATTCCAGAG-TGG 888
Query 427 TGCACTT-ATGCTATAGACTTTTATCAGTTTAAACCGTCGTCGTCTTCGGTGATAGGACT 485
| | ||| | | | |||||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 889 TCCCCTTCAGG-TCTAGACTTTTATCAGTTTACACCGTCGCCTTCTTCGGTGATAGGACT 947
Query 486 TGATGACAAAGAGGGGGAATTAAGAGATATTGGCTTGTGA 525
||||||||| ||||||||| |||||||||||||||||
Sbjct 948 TGATGACAAGGAGGGGGAA----GAGATATTGGCTTGTGA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5