BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474846
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57610.1 | Symbols: | Protein of unknown function (DUF607) ... 1683 0.0
AT1G09575.1 | Symbols: | Protein of unknown function (DUF607) ... 512 3e-144
> AT1G57610.1 | Symbols: | Protein of unknown function (DUF607)
| chr1:21337235-21338656 REVERSE LENGTH=1340
Length=1340
Score = 1683 bits (911), Expect = 0.0
Identities = 1059/1128 (94%), Gaps = 19/1128 (2%)
Strand=Plus/Plus
Query 135 CTGGTTCCATAGGAGAAACAAATTCGTGGGTCATAATAAAAATCCGAtttttttGATTAA 194
||| || ||| | |||||||||| |||||||||| | |||||||||| ||||||||||||
Sbjct 183 CTGATTTCATCGAAGAAACAAATCCGTGGGTCATTAGAAAAATCCGA-TTTTTTGATTAA 241
Query 195 AAGATGTGGTCGGTGATGGGTTTAGTGAGACGTACGGCTATGTCATCCACCGTGAATAAA 254
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 242 AAGATGTGGTCGGTGATGGGTTTAGTGAGACGTACGGCTATGTCCTCCACCGTGAATAAA 301
Query 255 TCTTCTCCGGTTAGGTCTTTGCTTGGTGGGTTTAGGTGTTTCAAC-----GT-T------ 302
|||||||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 302 GCTTCTCCGGTTAGGTCTTTGCTTGGTGGGTTTAGATGTCTCAACGTTGAGTCTAAGGAA 361
Query 303 GAAGATGAGAAAAAAGATATGACTGTGATGGAAGCTAAGAAGTTAATGAGATTAGTCAAT 362
|||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 362 GAAGATGAGAAAAAGGATATGACTGTGTTAGAAGCTAAGAAGTTAATGAGATTAGTGAAT 421
Query 363 GTTGAAGATATGAAGAAGAAGCTTATTGGTATGAGTGATAAAGAAATGGTTTCTTATACT 422
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 422 GTTGAAGATATGAAGAAGAAGCTTATTGGTATGGGTGATAAAGAAATGGTTACTTACACT 481
Query 423 ACACTTATTGAATCATCTCAAGGTTTAGGTATCGCTAAATCTCTTGATGAAGCTCATGCT 482
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 482 ACACTTATTGAAGCATCTCAAGGTTTAGGTATCGCTAGATCTCTTGATGAAGCTCATGCT 541
Query 483 TTTGCTCGTGTTCTTGATGATGCTGGTGTTATTTTGATTTTTCGTGATAAAGTCTATCTT 542
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 542 TTTGCTCGTGTTCTTGATGATGCTGGTGTTATTTTGATCTTTCGTGATAAAGTCTATCTT 601
Query 543 CATCCTCATAAGGTGGTGGATTTGATAAGAAAGGCAGTGCCTTTAGGTTTGAATCCAGAG 602
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 602 CATCCTCATAAGGTGGTGGATTTGATTAGAAAGGCAGTGCCTTTAGGTTTGAATCCAGAT 661
Query 603 GATGATTTGATTAGAGAAGAGTTTGATAAGATGAGAAGTATGAAGGAAGAGATTGATGTG 662
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GATGAGTTGATTAGAGAAGAGTTTGATAAGATGAGAAGTATGAAGGAAGAGATTGATGTG 721
Query 663 TTAGCTCATCAACAAGTGAGGAAGATTCTATGGGGTGGTCTTGGTTATTCAGTGGTTCAG 722
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 722 TTAGCTCATCAACAAGTGAGGAAGATTCTATGGGGTGGTCTTGGTTACTCAGTGGTTCAA 781
Query 723 ATTGGTATCTTTGTTAGGTTAACGTTTTGGGAGTTTTCTTGGGATGTGATGGAACCAATA 782
||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 782 ATTGGAATCTTTGTTAGGCTAACTTTTTGGGAGTTTTCTTGGGATGTGATGGAACCAATA 841
Query 783 ACGTTTTTCACTACAGCTACTGGGATTATTGTGGGTTATGCTTATTTCTTGATGACTTCT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ACGTTTTTCACTACAGCTACTGGGATTATTGTGGGTTATGCTTATTTCTTGATGACTTCT 901
Query 843 AGAGACCCAACGTATCAAGATTTCATGAAAAGGTTGTTTCTTTCTAGGCAGAGGAAGTTG 902
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 902 AGAGATCCAACGTATCAAGATTTCATGAAAAGGTTGTTTCTTTCCAGGCAGAGGAAGTTG 961
Query 903 CTTAAGAGTCATAAGTTTGATGTTGAGAGGTTTAAGGAACTTGAGAATAAGTGGAAGATA 962
|||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||
Sbjct 962 CTTAAGAGTCATAAGTTTGATGCTGAGAGGTTTAAAGAACTGGAGAACAAGTGGAAGATA 1021
Query 963 ATGTCTTGCTCTTCTTCTTCGTGCCACGCAAATGCATCGATTCGGAATCGTGTTGGTCTT 1022
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1022 ACGTCTTGCTCTTCTTCTTCGTGCCACGCTAATGCATCGATTCGGAATCGTGTTGGTGTT 1081
Query 1023 GATCTTGATTTGGAGGATTCTTTGCAGAGTCGTCATAGAGATTGATTTGGATCTAACCAT 1082
||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||
Sbjct 1082 GATCTTGATTTGGAGGATTCTTTGCAGAGTCATCACAGAGATTGATT-GGTTCTAACCAT 1140
Query 1083 TCT-CT-TTTTGATTATATTACTTAACCAGATTTTCTTCTCTCTGGAGATTTATCAAGTT 1140
| | | ||||||| ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1141 TTTTCACTTTTGATGATATTACTTAACCAGATTTTCTTCTCTCTGGAGGTTGATCAAGTT 1200
Query 1141 TGATTATTTGGTGTTGATTGATCCAAAGAGTTGGAGTAGTCATGGGAGATTTTTATTTGA 1200
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1201 TGATTATTTGGTGTTGATTGATCCAAAGAGTTGGAGTAGTCATGGT-GATTTTTATTTGA 1259
Query 1201 TAATCTTGAGCTACTGCT-ATCTAAATGAGCTCATGTTTTAATCTTTT 1247
||||||||||||||| || || ||||| ||||||||| ||||||||||
Sbjct 1260 TAATCTTGAGCTACT-CTTATTTAAATCAGCTCATGTGTTAATCTTTT 1306
> AT1G09575.1 | Symbols: | Protein of unknown function (DUF607)
| chr1:3101671-3102925 REVERSE LENGTH=1152
Length=1152
Score = 512 bits (277), Expect = 3e-144
Identities = 623/780 (80%), Gaps = 63/780 (8%)
Strand=Plus/Plus
Query 302 TGAAGATGAG-A-AA-AAAGATATGACTGTGA-TGGAAGCTAAGAAGTTAATGA-GATTA 356
|||||| ||| | || ||||| || ||| | | |||||| |||||| |||||| | ||
Sbjct 219 TGAAGAGGAGAAGAAGAAAGAGATAACTAT-AGCGGAAGCGAAGAAGCTAATGAGGCTT- 276
Query 357 GTCAATGTTGAAGATATGAAGAAGAAGCTTATTGGTATGAG-TGATAAAGAAATGGTTTC 415
|| ||||||||||| ||||||||||||||| ||||| || | ||||| ||| | || ||
Sbjct 277 GTGAATGTTGAAGACATGAAGAAGAAGCTTGTTGGTGTG-GCTGATAGAGATGTTGTCTC 335
Query 416 TTA-TACTACACTTATT-GAATCATCTCAAGGTTTAGGTATCGCTAAATCTCTTGATGAA 473
||| | |||||||| || ||| | |||||||| | |||||||||| ||||| ||||||
Sbjct 336 TTACT-CTACACTT-TTAGAAGCTTCTCAAGGAATGGGTATCGCTAGATCTCCCGATGAA 393
Query 474 GCTCATGCT-TTTGCTCGTGTTCTTGATGATGCTGGTGTTATTTTGATTTTTCGTGATAA 532
||||||| | ||||||||||||||||| |||||||| ||| | ||||| |||||||||||
Sbjct 394 GCTCATG-TCTTTGCTCGTGTTCTTGACGATGCTGGCGTTGTCTTGATCTTTCGTGATAA 452
Query 533 AGTCTATCTTCATCCTCATAAGGTGGTGGATTTGATAAGAAAG-GCAG-TGCCTTTAGG- 589
|||||||||||| || | |||||||||||| |||| || ||| || | ||||||| ||
Sbjct 453 AGTCTATCTTCACCCAGACAAGGTGGTGGATCTGATTAG-AAGAGC-GATGCCTTT-GGA 509
Query 590 TTTGAATCCAGAGGATGATTTGAT-TAGAGAAGAGTTTGATAAGA-TGAGAAGT-ATGAA 646
|||||||||||| ||| || || ||||| || | || | |||||| | |||||
Sbjct 510 CCAGAATCCAGAGGAAGATCAAATCAAG-GAAGAATTCAACAA-ATTGAGAA-TCATGAA 566
Query 647 GGAAGAGATTGATGTGTTAGCTCATCA-ACAAGTGAGGAAGATTCTATGGGGTGGTCTTG 705
|||||||||||||| || |||||| | |||||||||||||||||| ||| ||||| ||
Sbjct 567 AGAAGAGATTGATGTTTTGGCTCAT-AGACAAGTGAGGAAGATTCTTTGGTGTGGT-TTA 624
Query 706 GTTA-TTCAG-TGGTTCAGATTGGTA-TCTTTGTTAGGTTAACGTTT-TGGGAGTTTTCT 761
| || ||| | ||||||| ||||| | ||||| |||| ||||| ||| ||||| || ||
Sbjct 625 GCTACTTC-GATGGTTCAAATTGG-ACTCTTTTTTAGATTAAC-TTTCTGGGAATTCTCA 681
Query 762 TGGGATGTGATGGAACCAATAACGTTT-TTCACTACAGCTACTGGGATTATTGTGGGTTA 820
|||||||||||||||||||| || ||| ||| ||||||| ||||| || |||||||||||
Sbjct 682 TGGGATGTGATGGAACCAATCAC-TTTCTTCGCTACAGCGACTGGAATCATTGTGGGTTA 740
Query 821 TGCTTATTTCTTGATGACTTCTAGAGACCCAACGTATCAAGATTTCATGAAAAGGTTGTT 880
||||||||||||||||||||| ||||| || || ||||| ||||||||||| ||| | ||
Sbjct 741 TGCTTATTTCTTGATGACTTCGAGAGATCCGACATATCAGGATTTCATGAAGAGGCTCTT 800
Query 881 TCTT-TCTAGGCAGAGGAAGTTGCTT-AAGAGTCATAAGTTTGA-TGTTGAGAGGTTTAA 937
||| || || |||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 801 -CTTGTCGAGACAGAGGAAGTTG-TTGAAGAGTCATAAGTTTGACTGC-GAGAGGTTTAA 857
Query 938 GGAACTTG-AGAA-TAAGTGGAAGATAATGTCTTGCTCTTCTTCTTCGTGCCACGCAAAT 995
|||| ||| ||| | | | || | | || | | || |||| | | ||| | || |
Sbjct 858 GGAA-TTGGAGAGGTTATTT-AA-A-A-TGAC--G-TCGTCTTGT-CATGC-A-GC---T 903
Query 996 GCATCGATTCGGAATCGTGTTGGTCTT-GATCTTGATTTGGAGGATTCTTTGCAGAGTCG 1054
|| || || ||||||||||||| || || |||||| | |||||| |||||||||||||
Sbjct 904 GCGTCTATAAGGAATCGTGTTGGA-TTAGAACTTGATCTCGAGGATGCTTTGCAGAGTCG 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61294865445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5