BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474849
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57660.1 | Symbols: | Translation protein SH3-like family p... 1035 0.0
AT1G57860.1 | Symbols: | Translation protein SH3-like family p... 963 0.0
AT1G09690.1 | Symbols: | Translation protein SH3-like family p... 623 7e-178
AT1G09590.1 | Symbols: | Translation protein SH3-like family p... 612 2e-174
AT1G31355.1 | Symbols: | 60S ribosomal protein L21 (RPL21D), p... 379 2e-104
AT1G09486.1 | Symbols: | pseudogene, 60S ribosomal protein L21... 339 3e-92
> AT1G57660.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21355520-21356537 FORWARD LENGTH=715
Length=715
Score = 1035 bits (560), Expect = 0.0
Identities = 630/662 (95%), Gaps = 11/662 (2%)
Strand=Plus/Plus
Query 1 CTTTTCTAGGGTTTCAGCCACCAGACACAAACAGAGAG-GAAAAATGCCGGCGGGACACG 59
||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||
Sbjct 5 CTTCTCTAGGGTTTCAGCCACCAGACTCAAACAGAGAGTG-AAAATGCCGGCGGGACACG 63
Query 60 GAGTGAGAGCGAGAACAAGAGATCTGTTCGCAAGACCATTCAGGAAGAAGGGTTATATTC 119
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 64 GAGTGAGGGCGAGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTC 123
Query 120 CACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 CACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATG 183
Query 180 GAGCTATCCACAAGGGTATGCCGCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGA 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 184 GAGCTATCCACAAGGGTATGCCTCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGA 243
Query 240 ATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAGATTGGGAACAGAATCATAA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 ATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACAAACAGATTGGGAACAGAATCATAA 303
Query 300 GGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGTCAAGGTGTGCTGAGGAGTTTA 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 304 GGAAGAGGATACATGTGCGTGTGGAGCATGTGCAACAGTCAAGGTGTGCTGAGGAGTTTA 363
Query 360 AACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA-GCTAAAGCTAGAGGAGAGACT 418
||||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 364 AACTCAGAAAGAAGCAGAACGATGTGCTTAAGGCTG-ATGCTAAAGCCAGAGGAGAGACT 422
Query 419 ATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTTCATGGTTGAAGGTATGACC 478
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 423 ATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCGGGTTTCATGGTCGAAGGTATGACA 482
Query 479 TTGGAGACTGTTACTCCCATTCCTTACGATGTTGTCAACGATCTCAAGGGTGGCTATTGA 538
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 483 TTGGAGACTGTCACTCCCATTCCTTACGATGTTGTCAACGATCTCAAGGGTGGTTATTGA 542
Query 539 GTTGTTTCCATTTT-T-ATCATTCTCTGTTCGGAATTTTTGCACTTGCTTTGtttttttA 596
||| |||||||||| | |||||||||| || ||||||||||||||||||| ||| |
Sbjct 543 GTTTTTTCCATTTTATTATCATTCTCTACTCAGAATTTTTGCACTTGCTTT-TTT----A 597
Query 597 ATGATGTTTTTGTATCAAACAAGACTGATTTCTATATGGTATGAGAGTGCAGTTCAGATT 656
|||||||||||||||||| |||||| ||||||||||||||||| |||||| ||||||||
Sbjct 598 ATGATGTTTTTGTATCAATTAAGACTAATTTCTATATGGTATGAAAGTGCAATTCAGATT 657
Query 657 TT 658
||
Sbjct 658 TT 659
> AT1G57860.1 | Symbols: | Translation protein SH3-like family
protein | chr1:21429898-21430865 REVERSE LENGTH=669
Length=669
Score = 963 bits (521), Expect = 0.0
Identities = 584/613 (95%), Gaps = 10/613 (2%)
Strand=Plus/Plus
Query 33 AGA-GAGGAAAAATGCCGGCGGGACACGGAGTGAGAGCGAGAACAAGAGATCTGTTCGCA 91
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 27 AGAGGAGGAAAAATGCCGGCGGGACACGGAGTGAGGGCGAGAACAAGAGATCTGTTCGCG 86
Query 92 AGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTC 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 AGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTC 146
Query 152 GGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCGCATAAGTTC 211
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 147 GGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCTCATAAGTTC 206
Query 212 TACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTC 271
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 207 TACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAACGTGCCGTTGGTGTTGAAGTC 266
Query 272 AACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AACAAACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTG 326
Query 332 CAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAG 391
|| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 327 CAACAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGAAAGAAACAGAACGATGTGCTTAAG 386
Query 392 GCTGCA-GCTAAAGCTAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAA 450
|||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 387 GCTG-ATGCTAAAGCCAGAGGTGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAA 445
Query 451 ACCGGGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATGT 510
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 446 ACCGGGTTTCATGGTTGAAGGTATGACATTGGAGACTGTCACTCCCATTCCTTACGATGT 505
Query 511 TGTCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCATTTT-T-ATCATTCTCTGTTCG 568
||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||
Sbjct 506 TGTCAACGATCTCAAGGGTGGTTATTGAGTTGTTTCCATTTTATTATCATTCTCTACTCA 565
Query 569 GAATTTTTGCACTTGCTTTGtttttttAATGATGTTTTTGTATCAAACAAGACTGATTTC 628
||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 566 GAATTTTTGCACTTGCTTT-TTT----AATTATGTTTTTGTATCAAACAAGACTGATTTA 620
Query 629 TATATGGTATGAG 641
|||| | ||||||
Sbjct 621 TATACGATATGAG 633
> AT1G09690.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3136188-3137475 REVERSE LENGTH=759
Length=759
Score = 623 bits (337), Expect = 7e-178
Identities = 451/507 (89%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 36 GAGGAAAAATGCCGGCGGGACACGGAGTGAGAGCGAGAACAAGAGATCTGTTCGCAAGAC 95
||||||||||||| ||||| || ||||| | |||||||| || ||||||||||| || |
Sbjct 38 GAGGAAAAATGCCAGCGGGTCATGGAGTTCGGGCGAGAACGAGGGATCTGTTCGCGAGGC 97
Query 96 CATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCG 155
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 98 CATTCAGGAAGAAGGGTTACATTCCACTCTCGACTTACCTGAGAACCTTCAAGGTCGGCG 157
Query 156 ATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCGCATAAGTTCTACC 215
||||||||||||| ||||| ||||| || ||||||||||||||||| || ||||||||||
Sbjct 158 ATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACC 217
Query 216 ATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACA 275
| |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||||||
Sbjct 218 ACGGTCGTACTGGTCGTATCTGGAACGTCACTAAACGCGCCGTCGGTGTTGAAGTCAACA 277
Query 276 AACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGC 335
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 278 AACAGATTGGCAACAGGATCATAAGGAAGAGGATTCATGTGCGTGTGGAGCATGTGCAGC 337
Query 336 AGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTG 395
| ||||| |||||||||||||| || || ||||||||| |||| |||| ||| |||||||
Sbjct 338 AATCAAGATGTGCTGAGGAGTTCAAGCTGAGGAAGAAGAAGAATGATGAGCTCAAGGCTG 397
Query 396 CAGCTAAAGCTAGA-GGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCG 454
|||| ||||| | | || ||||| |||||||||||||||||||||||||| || |||||
Sbjct 398 CAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 456
Query 455 GGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATGTTGTC 514
|| |||||||| ||||| ||||||||||||||||| ||||| || || |||||||| |||
Sbjct 457 GGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCGTACGATGTCGTC 516
Query 515 AACGATCTCAAGGGTGGCTATTGAGTT 541
|||||||||||||| ||||||| ||||
Sbjct 517 AACGATCTCAAGGGAGGCTATT-AGTT 542
> AT1G09590.1 | Symbols: | Translation protein SH3-like family
protein | chr1:3106502-3107772 FORWARD LENGTH=708
Length=708
Score = 612 bits (331), Expect = 2e-174
Identities = 449/507 (89%), Gaps = 3/507 (1%)
Strand=Plus/Plus
Query 36 GAGGAAAAATGCCGGCGGGACACGGAGTGAGAGCGAGAACAAGAGATCTGTTCGCAAGAC 95
|||||||||||||||| ||||| ||||| |||||||||| || ||||||||||| || |
Sbjct 40 GAGGAAAAATGCCGGCTGGACATGGAGTTCGAGCGAGAACGAGGGATCTGTTCGCGAGGC 99
Query 96 CATTCAGGAAGAAGGGTTATATTCCACTCTCCACTTACCTCAGAACCTTCAAGGTCGGCG 155
| ||||||||||||||||| ||||| || || |||||||| || ||||||||||||||||
Sbjct 100 CTTTCAGGAAGAAGGGTTACATTCCTCTATCGACTTACCTGAGGACCTTCAAGGTCGGCG 159
Query 156 ATTACGTCGATGTCAAGGTTAATGGAGCTATCCACAAGGGTATGCCGCATAAGTTCTACC 215
||||||||||||| ||||| ||||| || ||||||||||||||||| || ||||||||||
Sbjct 160 ATTACGTCGATGTGAAGGTGAATGGTGCGATCCACAAGGGTATGCCTCACAAGTTCTACC 219
Query 216 ATGGTCGTACTGGTCGCATCTGGAATGTCACTAAGCGTGCCGTTGGTGTTGAAGTCAACA 275
|||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 220 ATGGTCGTACTGGTCGTATCTGGAACGTCACCAAGCGCGCCGTCGGTGTTGAAGTCAACA 279
Query 276 AACAGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGC 335
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 280 AACAGATTGGGAACAGGATCATAAGGAAGAGGATTCATGTTCGTGTGGAGCATGTGCAGC 339
Query 336 AGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTG 395
||||||| ||||| |||||||| || || ||||||||| | ||||||| ||| |||||||
Sbjct 340 AGTCAAGATGTGCCGAGGAGTTCAAGCTGAGGAAGAAGAAAAACGATGAGCTCAAGGCTG 399
Query 396 CAGCTAAAGCTAGA-GGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTAAACCG 454
|||| ||||| | | || ||||| |||||||||||||||||||||||||| || |||||
Sbjct 400 CAGCCAAAGCCA-ATGGTGAGACCATCAGCACCAAGAGACAGCCTAAAGGACCCAAACCA 458
Query 455 GGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATGTTGTC 514
|| |||||||| ||||| ||||||||||||||||| ||||| || || |||||||| |||
Sbjct 459 GGATTCATGGTCGAAGGAATGACCTTGGAGACTGTCACTCCAATCCCCTACGATGTCGTC 518
Query 515 AACGATCTCAAGGGTGGCTATTGAGTT 541
||||||||||| || ||||||| ||||
Sbjct 519 AACGATCTCAAAGGAGGCTATT-AGTT 544
> AT1G31355.1 | Symbols: | 60S ribosomal protein L21 (RPL21D),
pseudogene, similar to 60s ribosomal protein L21 GB:Q43291
from (Arabidopsis thaliana); blastp match of 74% identity and
3.6e-50 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S
ribosomal protein L21 {Oryza sativa} | chr1:11228988-11229990
FORWARD LENGTH=1003
Length=1003
Score = 379 bits (205), Expect = 2e-104
Identities = 280/315 (89%), Gaps = 9/315 (3%)
Strand=Plus/Plus
Query 330 TGCAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTA 389
|||| ||||||||||||| ||| ||||||| |||||||| ||||| ||||||||| |||
Sbjct 649 TGCAACAGTCAAGGTGTGATGATGAGTTTAGTCTCAGGAAAAAGCAAAACGATGTGTTTA 708
Query 390 AGGCTGCAGCTAAAGCTAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTA 449
||||||| |||||||||| | | || ||||| ||||| |||||||| |||||||||||||
Sbjct 709 AGGCTGCTGCTAAAGCTAAATGTGAAACTATTAGCACTAAGAGACAACCTAAAGGTCCTA 768
Query 450 AACCGGGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATG 509
|||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 769 AACCTTGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTCACTCCCATTCCC-A--ATG 825
Query 510 TTGTCAACGATCTCAAGGGTGGCTATTGAGTTGTTTCCATTTT-TATCATTCTCTGT-TC 567
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||| | |
Sbjct 826 TTGTCAACGATCTCAAAGGTGGCTATTGAGTTGTTTCCATTTTCT-TCATTCTCT-TCTA 883
Query 568 GGAATTTTTGCACTTGCTTTGtt-tttttAATGATGTTTTTGTATCAAACAAGACTGATT 626
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 884 AGAATTTTTGCACTTGCTTTGTTCTTTTTA-TGATGTTTTTGTATCAAACAAGACTGAAT 942
Query 627 TCTATATGGTATGAG 641
||||||| ||| |||
Sbjct 943 TCTATATTGTACGAG 957
Score = 316 bits (171), Expect = 1e-85
Identities = 197/210 (94%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 71 AGAACAAGAGATCTGTTCGCAAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 130
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 13 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCTACTCTCCACT 72
Query 131 TACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCAC 190
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 73 TACCTCATAACCTTCAAGGTCGGCGATTACGTCAATGTCAAGGTTAATGGAGCTATTCAC 132
Query 191 AAGGGTATGCCGCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAG 250
|||||||| || ||||||||||||||| |||||| |||||| ||||| ||| |||||| |
Sbjct 133 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGAAATCTCACTACG 192
Query 251 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 280
||||||||||||||||||||||||||||||
Sbjct 193 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 222
Score = 176 bits (95), Expect = 2e-43
Identities = 111/119 (93%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 279 AGATTGGGAACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGT 338
||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 534 AGATTAAGAACAGAAACATAAGGAAGAGGATACATGTACGTGTGGAGCATGTGCAACAGT 593
Query 339 CAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 397
||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 594 CAAGGTGTGATGAGGAGTTTAATCTCTGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 652
> AT1G09486.1 | Symbols: | pseudogene, 60S ribosomal protein L21
(RPL21B), temporary automated functional assignment; blastp
match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630
60S ribosomal protein L21 {Oryza sativa}
| chr1:3062430-3063731 REVERSE LENGTH=1302
Length=1302
Score = 339 bits (183), Expect = 3e-92
Identities = 201/210 (96%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 71 AGAACAAGAGATCTGTTCGCAAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 130
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 463 AGAACAAGAGATCTGTTCGCGAGACCATTCAGGAAGAAGGGTTATATTCCACTCTCCACT 522
Query 131 TACCTCAGAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATCCAC 190
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 523 TACCTCATAACCTTCAAGGTCGGCGATTACGTCGATGTCAAGGTTAATGGAGCTATTCAC 582
Query 191 AAGGGTATGCCGCATAAGTTCTACCATGGTCGTACTGGTCGCATCTGGAATGTCACTAAG 250
|||||||| || ||||||||||||||| |||||| |||||| ||||||||| ||||||||
Sbjct 583 AAGGGTATTCCTCATAAGTTCTACCATAGTCGTATTGGTCGTATCTGGAATCTCACTAAG 642
Query 251 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 280
||||||||||||||||||||||||||||||
Sbjct 643 CGTGCCGTTGGTGTTGAAGTCAACAAACAG 672
Score = 261 bits (141), Expect = 6e-69
Identities = 187/209 (89%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 330 TGCAGCAGTCAAGGTGTGCTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTA 389
|||| ||||||||||||| ||| ||||||| |||||||||||||| ||||||||| |||
Sbjct 1097 TGCAACAGTCAAGGTGTGATGATGAGTTTAGTCTCAGGAAGAAGCAAAACGATGTGTTTA 1156
Query 390 AGGCTGCAGCTAAAGCTAGAGGAGAGACTATCAGCACCAAGAGACAGCCTAAAGGTCCTA 449
|| |||| |||||||||||| | |||||||| ||||| |||||||| |||||||||||||
Sbjct 1157 AGACTGCTGCTAAAGCTAGATGTGAGACTATTAGCACTAAGAGACAACCTAAAGGTCCTA 1216
Query 450 AACCGGGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTTACTCCCATTCCTTACGATG 509
|||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1217 AACCTTGTTTCATGGTTGAAGGTATGACCTTGGAGACTGTCACTCCCATTCCC-A--ATG 1273
Query 510 TTGTCAACGATCTCAAGGGTGGCTATTGA 538
|||||||||||||||| ||||||||||||
Sbjct 1274 TTGTCAACGATCTCAAAGGTGGCTATTGA 1302
Score = 176 bits (95), Expect = 2e-43
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 288 ACAGAATCATAAGGAAGAGGATACATGTGCGTGTGGAGCATGTGCAGCAGTCAAGGTGTG 347
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 991 ACAGAATTATAAGGAAGAGGATACATGTACGTGTGGAGCATGTGCAACAGTCAAGGTGTG 1050
Query 348 CTGAGGAGTTTAAACTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 397
|||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1051 ATGAGGAGTTTAATCTCAGGAAGAAGCAGAACGATGTGCTTAAGGCTGCA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33255005314
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5