BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474854
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57680.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3046 0.0
> AT1G57680.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised conserved protein UCP031277 (InterPro:IPR016971);
Has 70 Blast hits to 70 proteins in 19 species: Archae
- 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 66; Viruses
- 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:21362488-21364728
REVERSE LENGTH=1861
Length=1861
Score = 3046 bits (1649), Expect = 0.0
Identities = 1812/1885 (96%), Gaps = 34/1885 (2%)
Strand=Plus/Plus
Query 1 GGTTGTCACAGCTGGAAACAGCCTGTCACCAACGGAGAGtctctctcttcccttcttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1 GGTTGTCACAGCTGGAAACAGCCTGTCACCAACGGAGAGTCTCTCTCTTCCCTTC-T-TC 58
Query 61 tctctctaatcttttttttttcttccttcttctctatctctccttttccttcttcttcct 120
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 59 TCTCTCTAATCTTTTTTTTTTCTTCCTTGTTCTCTATCTCTCCTTTTCCTTCTTCTTCTT 118
Query 121 cctcctcctctctctgtttatttg---c---t--tcttctctttctccgattc-ttatca 171
||| ||||| |||||||||||||| | | ||||||||||||||||||| |||||
Sbjct 119 CCTTCTCCTTTCTCTGTTTATTTGCTTCGTTTCCTCTTCTCTTTCTCCGATTCTTTATCC 178
Query 172 atctcctccGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTTTT 231
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATCT--T-CGCTCAGATCTTCCCCGTTTCAACTCTTTGGATCCAGATTCTCCTCCTTTTT 235
Query 232 ATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 ATGTAGGTAACACGCATATCAAGTGTTAAAGAGTCAAGATCACAAAAAGTTCTATCGGGT 295
Query 292 GATCTGGGCTGCTTTGTTTTGTAATCTAATTGCAGAAAC-TTGCTCTGACTTGGTGGAGT 350
||||||||||||||| ||||||||||||||||||||||| |||||||||| | | |
Sbjct 296 GATCTGGGCTGCTTTCTTTTGTAATCTAATTGCAGAAACTTTGCTCTGAC-T--T---G- 348
Query 351 TTGATAGCTTGCGTAAAAGGTTCAATCTTTCTCCGTTTTTTCATCGATGAGTAGTTACTA 410
|||||||| |||||||||||||||||||||||| ||||||||| ||||||||| ||||
Sbjct 349 --GATAGCTT-CGTAAAAGGTTCAATCTTTCTCCG-TTTTTCATCAATGAGTAGTAACTA 404
Query 411 ATCTGGAAATTTGTTGGGAGAGAAAAGGAAGATTTTACTGCTATTGCTAGAGAACTTTTC 470
||||||||||||||||||||||||| || | ||| ||||||||||||||||||| ||||
Sbjct 405 ATCTGGAAATTTGTTGGGAGAGAAAGGGCACATTGCACTGCTATTGCTAGAGAACGTTTC 464
Query 471 TGCATCCATGCTGGTAGAGAGCATGCGTGGATACTGTGTTTTGGGTGATGCCCCTGACAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGCATCCATGCTGGTAGAGAGCATGCGTGGATACTGTGTTTTGGGTGATGCCCCTGACAA 524
Query 531 AATTAGTTCCCGATGCATTCGGCGTTGTGACGATATGTCTAGTCGCTCTGCTAGTTCTTT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AATTAGTTCCCGATGCATTCGGCGTTGTGACGATATGTCTAGTCGCTCTGCTAGTTCTTT 584
Query 591 TGGGTCTCCTTTGCATCGCTTACTCGTTCTATTTCCAGTCTCACGTTCGTAAGCAAGGGT 650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 585 TGGGTCTCCTTTGCATCGCTTACTCGTTCTATTTCCAGTCTCACGTTCGTAAGCAAGGCT 644
Query 651 ATATTCAACTTGGTTACTTCAGTGGTCCTTGGATTATCCGAATTACATTCATTCTGTTTG 710
|||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||
Sbjct 645 ATATTCAACTTGGTTACTTCAGTGGTCCCTGGATTATCCGAATCACTTTCATTCTCTTTG 704
Query 711 CTATCTGGTGGGCTGTTGGTGAGATTTTTCGATTGAGTTTGTTGAGGCGTCACAGAAGGT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 CTATCTGGTGGGCTGTTGGTGAGATTTTTCGATTGAGTTTGTTGAGGCGTCACAGAAGGT 764
Query 771 TATTGAGTGGGTTGGATCTGAGATGGCAAGAAAACGTTTGCAAGTGGTACATCGTTTCCA 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 TGTTGAGTGGGTTGGATCTGAGATGGCAAGAAAACGTTTGCAAGTGGTACATCGTTTCCA 824
Query 831 ATCTAGGATTTGCGGAGCCTTGCCTCTTTCTGACTCTCATGTTTCTTCTGCGTGCTCCCT 890
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 825 ATCTAGGATTTGCGGAGCCTTGTCTCTTTCTGACTCTCATGTTTCTTCTGCGTGCTCCCT 884
Query 891 TGAAGATGGAATCAGGGGCTTTGAGCGGAAAATGGAACAGGAACACAGCAGGTTATATTA 950
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 885 TGAAGATGGAATCAGGGGCTTTGAGCGGAAAATGGAACAGGGACACAGCAGGTTATATTA 944
Query 951 TTCTTTATTGTCTCCCGATGCTTGCTCTTCAACTTGCGGTTGTGTTATCCGAGTCACGCC 1010
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 945 TTCTTTATTGTCTCCCGATGCTTGCTCTTCAACTTGCGGTTGTGTTGTCCGAGTCACGCC 1004
Query 1011 TAAATGGTGGTAGTGGCTCTTATGTAAAGCTGCCACACGACTTCACAAGAACGTATTCCC 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 TAAATGGTGGTAGTGGCTCTTATGTAAAGCTGCCACACGACTTCACAAGAACGTATTCCC 1064
Query 1071 GAGTTAATATTGATCACGATGAGGTCGCCTTATGCACATATCCTCTACTGAGTACAATCC 1130
|||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1065 GAGTTATTATTGATCACGACGAGGTGGCCTTATGCACATATCCTCTACTGAGTACCATCC 1124
Query 1131 TTCTTGGTGTGTTTGCAGCCATCCTAACAGCTTACTTGTTCTGGCTTGGAAGGCAGATAC 1190
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TTCTTGGTGTGTTTGCAGCCGTCCTAACAGCTTACTTGTTCTGGCTTGGAAGGCAGATAC 1184
Query 1191 TGAAACTTGTCATTAACAAGCGTTTACAGAAGAGAGTATACACTTTGATATTCTCCGTCT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1185 TGAAACTTGTCATTAACAAGCGTTTACAGAAGAGAGTATACACTTTGATATTCTCGGTCT 1244
Query 1251 CGAGTTTCCTTCCATTAAGGATTGTTATGCTCTGTTTGTCGGTTCTCACAGCAGCAGACA 1310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245 CGAGTTTCCTTCCATTAAGGATTGTTATGCTCTGTTTGTCGGTTCTCACAGCAGCAGACA 1304
Query 1311 AGATTATATTCGAAGCCCTTTCTTTCTTGGCCTTCCTCTCCCTCTTCTGCTTTTGCGTGG 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 AGATTATATTCGAAGCCCTTTCTTTCTTGGCCTTCCTCTCCCTCTTCTGCTTTTGCGTGG 1364
Query 1371 TATCCATCTGCTTGCTTGTCTACTTCCCGGTTTCAGATTCCATGGCCCTGAGAGGTCTAA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TATCCATCTGCTTGCTTGTCTACTTCCCGGTTTCAGATTCCATGGCCCTGAGAGGTCTAA 1424
Query 1431 GGGACTCAGACGAAGAGGATACGGCTGTGACCGAAGAACGCAGTGGTGCTCTGTTACTTG 1490
| ||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 GAGACACAGATGATGAGGATACGGCTGTGACCGAAGAACGCAGTGGTGCTCTGTTACTTG 1484
Query 1491 CACCAAACACTTCACTAACTGATGAGGGCTTGAGCTTAAGAGGTCGGAGAGACTCGGGAT 1550
|||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1485 CACCAAACTCTTCACAAACTGATGAGGGATTGAGCTTAAGAGGTCGGAGAGACTCGGGAT 1544
Query 1551 CGTCTACACAGGAGAGGTATGTGGAACTCAGCCTATTTCTGGAAGCTGAGAACTAAAATC 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CGTCTACACAGGAGAGGTATGTGGAACTCAGCCTATTTCTGGAAGCTGAGAACTAAAATC 1604
Query 1611 GTCAAAGGCTGTTTCTATTTGGCTTTTGGCAATGTACAGATTCCTGGTGACACAAGCaga 1670
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1605 GCCAAAGGCTGTTTCTATTTGGCTTTTGGCAATGTACAGATTCCTGGTGAAACAAGCAGA 1664
Query 1671 gagagagagagGGCTACTAAAGAGTTTAAGTAAGAGAATATGTTTGCGCaaaaaaaGGCA 1730
||||||| | | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1665 GAGAGAG-G-G----A-TAAAGAGTTTAAGTATGAGAATATGTTTGCGCAAAAAAAGGCA 1717
Query 1731 TAATTTCAGTTTTGTGGCAAAGACACTTTGACTGTAAAGGAGGGTTTAAGGGGGGTTTAC 1790
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1718 TAATTTCAGTTTTGTGGCAAAGACACTTTGACTGTAAAGGAGGGTTTAAGGGGG-TTTAC 1776
Query 1791 TCTTGTGAGGGTTTGTTGTTTGAAATGTTTTCTGCTTGATGGATCATATTTTTGTACCTT 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCTTGTGAGGGTTTGTTGTTTGAAATGTTTTCTGCTTGATGGATCATATTTTTGTACCTT 1836
Query 1851 TATTATGTGATCAATTTTGATTTAG 1875
|||||||||||||||||||||||||
Sbjct 1837 TATTATGTGATCAATTTTGATTTAG 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5