BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474855 Length=991 Score E Sequences producing significant alignments: (Bits) Value AT1G57690.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1399 0.0 > AT1G57690.1 | Symbols: | F-box/RNI-like superfamily protein | chr1:21366721-21368150 REVERSE LENGTH=993 Length=993 Score = 1399 bits (757), Expect = 0.0 Identities = 918/996 (92%), Gaps = 10/996 (1%) Strand=Plus/Plus Query 1 ATGGCAGACAACTCTGCCGCCTGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60 |||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCAGACAACTCGGCCACCCGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60 Query 61 ATCAAAGGAGAAGTAGA-TTCAATCAGCTCTTTACCTGATGTGATCCTTCAACATATCCT 119 |||||||||||||| || | ||| ||||||||||| |||||||||||||||||||| || Sbjct 61 ATCAAAGGAGAAGTTGACAT-AATTAGCTCTTTACCCGATGTGATCCTTCAACATATTCT 119 Query 120 CTTCTCTTTTGAGACGAAATTCGCCATCCGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179 |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 120 CTTCTCTTTTCAGACGAAATACGCCATCAGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179 Query 180 TGAAGCTGATGCCATAAACAAAGCCCTA-GCTAAATACACAGCTCCAAAGATGATGGATT 238 |||||||||||||||||||||||||||| | | ||||||||||||| ||||||||| ||| Sbjct 180 TGAAGCTGATGCCATAAACAAAGCCCTAAG-TCAATACACAGCTCCCAAGATGATGAATT 238 Query 239 TTCATCTCAAAATCAACAAGAATAACAATGTTCACCACATCAAGAAGTGGATCGAATTTG 298 ||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||| Sbjct 239 TTCATCTCAAAATCAACAAGAATAACAGTCTTCATCACATCAAGAAGTGGACCGAATTTG 298 Query 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCTTTTTCGTTGTAAAAAGATTC 358 ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| Sbjct 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCGTTTTCGTTCTAACAAGATTC 358 Query 359 CTCGTTTCTCCGACATCAACTCCTATTTCAAGCCACTCAACCATAAGTTAGATTTTTC-T 417 ||||||||| ||| ||||| |||| | ||||| |||||| ||||| ||||||||| | | Sbjct 359 CTCGTTTCTACGAGATCAATTCCTCTGTCAAGTCACTCAGCCATAGGTTAGATTTG-CAT 417 Query 418 GATGTGATTCCCGGACACGGTGTGTCTTGGACATCCCTGAAGAAGTTGTCCTTGCGGTAT 477 |||||||||||| ||||||||||||||||||||||| |||||||||| |||||| | ||| Sbjct 418 GATGTGATTCCCCGACACGGTGTGTCTTGGACATCCTTGAAGAAGTTTTCCTTGAGTTAT 477 Query 478 TGTGGTTTACCTGATGAATCTGCTAAAATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 478 TGTGGGTTACCTGATGAATCTGCTAAGATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537 Query 538 ACGCAGATTGTGGCACCACATATCAATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597 | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 538 ATGCAGATTGTGGCACCACAGATCCATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597 Query 598 ACTCTAGTTGATGTCTCGTCCTTAACCGAAGCTGAAGTATTGGACATTATCATTTTCCCA 657 ||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| Sbjct 598 ACTTTAGTTGATGTCTCATCCTTAACCGAAGCTGAAGTACTGGACATTATCATCTTCCCA 657 Query 658 TTGAACATGTCCTTGAAGGCTGATTTTCTTTATGCCACGATGCTAGAGATGCTAAAAAAG 717 ||||| |||||| || |||||||||||| ||||||||||||||||||||||||||||| Sbjct 658 GTGAACCTGTCCTACAATGCTGATTTTCTTCATGCCACGATGCTAGAGATGCTAAAAAAG 717 Query 718 TTAGAGAATGTAGAGAAGCTTACTTTTAGTGGAGGCTCTCTTCAG--TTATCATCTATTC 775 ||| ||||||||||||||||||||||||||||| ||| ||||||| || | ||| || Sbjct 718 TTAAAGAATGTAGAGAAGCTTACTTTTAGTGGAAGCTATCTTCAGAATT-TG-TCTGTTG 775 Query 776 CCGAGAAACGTGGTGTTCCTTTTCCCATGTTCAAGGTCAAAGCTTTGACCCTTAAGATGG 835 ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| Sbjct 776 CCGAGAAACGTGGTGTTCCTTTTCCAATGTTCAAGGTCAAAGCTTTGACTCTTGAGATGA 835 Query 836 AACATTTTGTTATTTCTGATATAGAAAGAATGTTACAAAACTCACCTAATTTAAAGAAGC 895 |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 836 AACACTTTGTAATTTCTGATATAGAAAGAATGTTACAAAGCTCACCTAATTTAAAGAAGC 895 Query 896 TAACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTGACAGACACTTTACAAGGCTTG 955 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| Sbjct 896 TAACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTTACAGATACTTTGCAAGGCTTG 955 Query 956 AATCTGGATCAATGCTAGAGATCAAAAAAGGTGTCT 991 |||||||||||||||| ||| ||||||||||||||| Sbjct 956 AATCTGGATCAATGCTCGAGCTCAAAAAAGGTGTCT 991 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48526186002 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5