BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474855
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57690.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1399 0.0
> AT1G57690.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:21366721-21368150 REVERSE LENGTH=993
Length=993
Score = 1399 bits (757), Expect = 0.0
Identities = 918/996 (92%), Gaps = 10/996 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGACAACTCTGCCGCCTGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGACAACTCGGCCACCCGTGTAAGAGTCCCTAGCGACCGCAACAGTCGCCGGAAA 60
Query 61 ATCAAAGGAGAAGTAGA-TTCAATCAGCTCTTTACCTGATGTGATCCTTCAACATATCCT 119
|||||||||||||| || | ||| ||||||||||| |||||||||||||||||||| ||
Sbjct 61 ATCAAAGGAGAAGTTGACAT-AATTAGCTCTTTACCCGATGTGATCCTTCAACATATTCT 119
Query 120 CTTCTCTTTTGAGACGAAATTCGCCATCCGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179
|||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 120 CTTCTCTTTTCAGACGAAATACGCCATCAGAACTTCCGTCTTGTCAAAACGATGGAGGCA 179
Query 180 TGAAGCTGATGCCATAAACAAAGCCCTA-GCTAAATACACAGCTCCAAAGATGATGGATT 238
|||||||||||||||||||||||||||| | | ||||||||||||| ||||||||| |||
Sbjct 180 TGAAGCTGATGCCATAAACAAAGCCCTAAG-TCAATACACAGCTCCCAAGATGATGAATT 238
Query 239 TTCATCTCAAAATCAACAAGAATAACAATGTTCACCACATCAAGAAGTGGATCGAATTTG 298
||||||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||
Sbjct 239 TTCATCTCAAAATCAACAAGAATAACAGTCTTCATCACATCAAGAAGTGGACCGAATTTG 298
Query 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCTTTTTCGTTGTAAAAAGATTC 358
||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 299 CCATGTCCCGCAACGTAGAGAATATGTCCCTTGATGTCCGTTTTCGTTCTAACAAGATTC 358
Query 359 CTCGTTTCTCCGACATCAACTCCTATTTCAAGCCACTCAACCATAAGTTAGATTTTTC-T 417
||||||||| ||| ||||| |||| | ||||| |||||| ||||| ||||||||| | |
Sbjct 359 CTCGTTTCTACGAGATCAATTCCTCTGTCAAGTCACTCAGCCATAGGTTAGATTTG-CAT 417
Query 418 GATGTGATTCCCGGACACGGTGTGTCTTGGACATCCCTGAAGAAGTTGTCCTTGCGGTAT 477
|||||||||||| ||||||||||||||||||||||| |||||||||| |||||| | |||
Sbjct 418 GATGTGATTCCCCGACACGGTGTGTCTTGGACATCCTTGAAGAAGTTTTCCTTGAGTTAT 477
Query 478 TGTGGTTTACCTGATGAATCTGCTAAAATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 TGTGGGTTACCTGATGAATCTGCTAAGATTTTATCTGGTTGTCCGATTCTCGAATGGCCA 537
Query 538 ACGCAGATTGTGGCACCACATATCAATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597
| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 538 ATGCAGATTGTGGCACCACAGATCCATTGTCTCAAATTGAGAAACACTCAATTACCATGT 597
Query 598 ACTCTAGTTGATGTCTCGTCCTTAACCGAAGCTGAAGTATTGGACATTATCATTTTCCCA 657
||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 598 ACTTTAGTTGATGTCTCATCCTTAACCGAAGCTGAAGTACTGGACATTATCATCTTCCCA 657
Query 658 TTGAACATGTCCTTGAAGGCTGATTTTCTTTATGCCACGATGCTAGAGATGCTAAAAAAG 717
||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 658 GTGAACCTGTCCTACAATGCTGATTTTCTTCATGCCACGATGCTAGAGATGCTAAAAAAG 717
Query 718 TTAGAGAATGTAGAGAAGCTTACTTTTAGTGGAGGCTCTCTTCAG--TTATCATCTATTC 775
||| ||||||||||||||||||||||||||||| ||| ||||||| || | ||| ||
Sbjct 718 TTAAAGAATGTAGAGAAGCTTACTTTTAGTGGAAGCTATCTTCAGAATT-TG-TCTGTTG 775
Query 776 CCGAGAAACGTGGTGTTCCTTTTCCCATGTTCAAGGTCAAAGCTTTGACCCTTAAGATGG 835
||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 776 CCGAGAAACGTGGTGTTCCTTTTCCAATGTTCAAGGTCAAAGCTTTGACTCTTGAGATGA 835
Query 836 AACATTTTGTTATTTCTGATATAGAAAGAATGTTACAAAACTCACCTAATTTAAAGAAGC 895
|||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 836 AACACTTTGTAATTTCTGATATAGAAAGAATGTTACAAAGCTCACCTAATTTAAAGAAGC 895
Query 896 TAACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTGACAGACACTTTACAAGGCTTG 955
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 896 TAACAGTACGCGCAAAGGATAACACGGGGAAGTATCTTTACAGATACTTTGCAAGGCTTG 955
Query 956 AATCTGGATCAATGCTAGAGATCAAAAAAGGTGTCT 991
|||||||||||||||| ||| |||||||||||||||
Sbjct 956 AATCTGGATCAATGCTCGAGCTCAAAAAAGGTGTCT 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5