BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474857
Length=1502
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57720.1 | Symbols: | Translation elongation factor EF1B, g... 2287 0.0
AT1G09640.1 | Symbols: | Translation elongation factor EF1B, g... 1478 0.0
> AT1G57720.1 | Symbols: | Translation elongation factor EF1B,
gamma chain | chr1:21377615-21380378 FORWARD LENGTH=1661
Length=1661
Score = 2287 bits (1238), Expect = 0.0
Identities = 1363/1422 (96%), Gaps = 13/1422 (1%)
Strand=Plus/Plus
Query 1 ATACTATTTCTCGCCGCCGCTTTTGTATATTCTCTCTCGCTCGCTTTGCTCTCTCGGAA- 59
|||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 27 ATACTATTTCTCGCCGCCGCTTTTGTATCTTCT-TCTCTCTCGCTTTGCTCTCTCGGAAT 85
Query 60 -AATTTTGCAGAAAGCTCTCTCATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCT 118
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 TGTTTTTGCAGAAAG-TCTCTCATCTGAACTCAGAAAATCTCCGAGTTCGTATATCTTCT 144
Query 119 CCGTTTGAGCAATGGCGTTGGTGTTGCACACGTACAAGGGAAACAAAGGTGCCAATAAGG 178
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 145 CCGTTTGAGCAATGGCGTTGGTCATGCACACATACAAGGGAAACAAAGGTGCCAATAAGG 204
Query 179 CACTTATTGCTGCGGAGTATGCGGGTGTGAAGATCGAGGAGGCCTCAGACTTTCAGATGG 238
||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 205 CACTTATTGCTGCAGAGTATGCGGGTGTGAAGATCGAGGAGTCCGCAGACTTTCAGATGG 264
Query 239 GCGTCACTAACAAGTCACCAGAGTTCCTTAAGATGAACCCTATTGGAAAGGTTCCCGTGC 298
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 265 GCGTCACTAACAAGTCACCTGAGTTCCTTAAGATGAACCCTATTGGAAAGGTTCCTGTGC 324
Query 299 TTGAGACTCCTGAAGGTCCTATCTTTGAGAGCAATGCCATTGCCCGATACGTGAGCCGTA 358
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 325 TTGAGACTCCTGAAGGTCCCATATTTGAGAGCAATGCCATTGCCCGATATGTGAGCCGTA 384
Query 359 AGAATGGTGACAACTCTTTGAATGGATCCTCCCTCATTGAATACGCTCACATTGAGCAAT 418
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 385 AGAATGGTGACAACTCTTTGAATGGATCCTCCCTTATTGAATACGCTCACATTGAGCAAT 444
Query 419 GGATCGATTT-TGCCTCGTTGGAGATTGATGCTCACATGTTGAAGTGGTTCGCTCCAAGA 477
|||||||||| | |||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 445 GGATCGATTTCT-CCTCATTGGAGATTGATGCTAACATGTTGAAGTGGTTTGCTCCAAGA 503
Query 478 TTGGGCTTTGCTCCCTTCTCTGCTCCAGCTGAGGAAGCGGCAATTTCTGCATTGAAGAGA 537
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 504 ATGGGCTATGCTCCCTTCTCTGCCCCAGCTGAGGAAGCGGCAATTTCTGCATTGAAGAGA 563
Query 538 GGACTTGAGGCTCTGAACACACATCTCGCCTCCAACACTTACCTTGTTGGACACTCTGTT 597
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 564 GGACTTGAGGCTCTGAACACACATCTCGCCTCCAACACTTTCCTTGTTGGACACTCTGTC 623
Query 598 ACCCTTGCTGATATTGTCACCATCTGCAACTTGAACTTGGGATTTGCTACAGTGATGACC 657
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 624 ACCCTTGCTGATATTGTCACAATCTGCAACTTGAACTTGGGATTTGCCACCGTGATGACC 683
Query 658 AAGAAATTTACCTCTGCATTCCCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 AAGAAATTTACCTCTGCATTCCCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAG 743
Query 718 CCA-AACTTCAAGAAGGTGTTGGGTGATGCCAAACAAACTGAAGCTGTCCCTCCAGTTCC 776
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 744 CCAGAA-TTCAAGAAGGTGTTGGGTGATGCCAAACAAACCGAAGCTGTCCCTCCAGTTCC 802
Query 777 AT-CTAAGAAAGCTCCACAGCCTGCAAAGCCCAAGGAGGAGCCTAAGAAGGCGGCCCCTG 835
| |||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 803 -TACTAAGAAAGCTCCACAGCCTGCTAAGCCCAAGGAGGAGCCCAAGAAGGCAGCCCCTG 861
Query 836 TTGCAGAGGCACCAAAGCCTGCTGAGGAGGAAGAAGCACCAAAGCCTAAAGCCAAGAATC 895
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 862 TAGCAGAGGCACCAAAGCCTGCTGAGGAGGAGGAAGCACCAAAGCCTAAAGCCAAGAATC 921
Query 896 CTCTCGATTTGCTACCACCAAGCCCAATGGTTCTTGATGACTGGAAGAGGCTTTACTCGA 955
|||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 922 CTCTTGACTTGCTACCACCAAGCCCAATGGTTCTCGATGACTGGAAGAGGCTTTACTCGA 981
Query 956 ACACCAAATCCAACTTCCGTGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAG 1015
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 982 ACACCAAATCCAACTTCCGTGAGGTTGCTATCAAAGGATTCTGGGACATGTATGACCCGG 1041
Query 1016 AGGGGTACTCACTATGGTTCTGTGACTACAAGTACAACGATGAGAACATGGTCTCCTTTG 1075
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1042 AGGGGTACTCACTATGGTTCTGTGACTATAAGTACAACGATGAGAACATGGTCTCCTTTG 1101
Query 1076 TTACACTCAACAAGGTAGGAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCT 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TTACACTCAACAAGGTAGGAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCT 1161
Query 1136 TCGGAAAGATGCTGATTTGCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTCT 1195
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1162 TTGGAAAGATGCTTATTTGCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTTT 1221
Query 1196 TCCGTGGACCAGAGATCCCTAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACG 1255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TCCGTGGACCAGAGATCCCCAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACG 1281
Query 1256 AGTGGACTAAGGTTGATATCTCAGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTG 1315
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1282 AGTGGACTAAGGTTGATATCTCCGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTG 1341
Query 1316 AAGACGCCGAGCCATTTGAAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1375
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AAGACGCTGAGCCATTTGAAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1401
Query 1376 GCTCTTCACTGTATCTCCGTAGGGGTTTACTCTGTTACTCGT 1417
|||||| ||||||||||||| |||||||||||||||||||
Sbjct 1402 GCTCTT---TGTATCTCCGTAGAGGTTTACTCTGTTACTCGT 1440
> AT1G09640.1 | Symbols: | Translation elongation factor EF1B,
gamma chain | chr1:3119878-3122526 FORWARD LENGTH=1795
Length=1795
Score = 1478 bits (800), Expect = 0.0
Identities = 1181/1362 (87%), Gaps = 37/1362 (3%)
Strand=Plus/Plus
Query 30 TTCTCTCTCGCTCGCTTTGCTCTCTCGGAAAATT-TTGCAGAAAGCTCTCTCATCTGA-A 87
|||| |||| |||| ||||||||| ||||| ||| || ||| || | ||| ||| || |
Sbjct 85 TTCT-TCTCTCTCGATTTGCTCTCACGGAAGATTCTT-CAG-AA--TATCTGATCCGATA 139
Query 88 CTCAGAAAATCTCCGAGTTCGTATAT-CTTCTCCGTTTGAGCAATGGCGTTGGTGTTGCA 146
|||| || | || |||||| | | | ||||| ||||||||||| ||||| |||||
Sbjct 140 -TCAG--AAGCCCCAAGTTCG-CT-TGAAT-TCCGTCTGAGCAATGGCTTTGGTCTTGCA 193
Query 147 CACGTACAAGGGAAACAAAGGTGCCAATAAGGCACTTATTGCTGCGGAGTATGCGGGTGT 206
||||||||||||||||||| |||| | |||||||| ||||| || ||||| | |||||
Sbjct 194 CACGTACAAGGGAAACAAAAGTGCTGAGAAGGCACTCATTGCAGCAGAGTACGTTGGTGT 253
Query 207 GAAGATCGAGGAGGCCTCAGACTTTCAGATGGGCGTCACTAACAAGTCACCAGAGTTCCT 266
| ||||||| | | |||| |||||||||||||| ||||||||||| | || | ||||||
Sbjct 254 GCAGATCGATGTGCCCTCTGACTTTCAGATGGGTGTCACTAACAAAACCCCTGCGTTCCT 313
Query 267 TAAGATGAACCCTATTGGAAAGGTTCCCGTGCTTGAGACTCCTGAAGGTCCTA-TCTTTG 325
|||||||||||||||||||||||||| || ||||||||||| || ||| | | | ||||
Sbjct 314 CAAGATGAACCCTATTGGAAAGGTTCCTGTACTTGAGACTCCCGAGGGTTC-AGTATTTG 372
Query 326 AGAGCAATGCCATTGCCCGATACGTGAGCCGTA-AGAATGGTGACAACTCTTTGAATGGA 384
| ||||| || |||||||| || || ||||| | ||||||||||||||||||||| |||
Sbjct 373 AAAGCAACGCAATTGCCCGTTATGTAAGCCG-ATTGAATGGTGACAACTCTTTGAACGGA 431
Query 385 TCCTCCCTCATTGAATACGCTCACATTGAGCAATGGATCGATTT-TGCCTCGTTGGAGAT 443
|||||||| || ||||| || || |||||||||||||| ||||| | | || ||||||||
Sbjct 432 TCCTCCCTGATCGAATATGCACAAATTGAGCAATGGATTGATTTCT-CTTCATTGGAGAT 490
Query 444 -TGATGCTCA-CATGTTGAAGTGGTTC-GCTCCAAGATTGGGCTTTGCT-CCCTTCTCTG 499
| |||| | || |||| ||||||| || |||||| |||||||| | || | | ||
Sbjct 491 CT-ATGC-AAGTATCTTGAGGTGGTTCGGC-CCAAGAATGGGCTTT-ATGCCATACAGTG 546
Query 500 CTCCAGCTGAGGAAGCG-GCAATTTCTGCATTGAAGAGAGGACTTGAGGCTCTGAACACA 558
|||| ||||| |||| | || || ||| | |||||||||| |||||| ||||||||||||
Sbjct 547 CTCCGGCTGAAGAAG-GTGCGATCTCTACGTTGAAGAGAGCACTTGATGCTCTGAACACA 605
Query 559 CATCTCGCCTCCAACACTTACCTTGTTGGACACTCTGTTACCCTTGCTGATATTGTCACC 618
|||||| | || |||||||||||||| ||||||||| |||||||||||||||| ||||
Sbjct 606 CATCTCACGTCTAACACTTACCTTGTCGGACACTCTATTACCCTTGCTGATATCATCACT 665
Query 619 ATCTGCAACTTGAACTTGGGATTTGCTACAGTGATGACCAAGAAATTTACCTCTGCATTC 678
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 666 GTCTGCAACTTGAACTTGGGATTTGCTACTGTCATGACCAAGAAATTTACCTCTGAATTT 725
Query 679 CCTCATGTTGAGAGATACTTCTGGACAATGGTTAACCAGCCAAACTTCAAGAAGGTGTTG 738
|||||||||||||| ||||||||||| |||||||||| |||||||||| || ||||||
Sbjct 726 CCTCATGTTGAGAGGTACTTCTGGACTGTGGTTAACCAACCAAACTTCACTAAAGTGTTG 785
Query 739 GGTGATGCCAAACAAACTGAAGCTGTCCCTCC-AGTTCCATCTAAGAAAGCT-CCACAGC 796
||||||| |||||| ||||||||||||||||| | || | || ||||||||| || ||||
Sbjct 786 GGTGATGTCAAACAGACTGAAGCTGTCCCTCCTA-TTGCTTCCAAGAAAGCTGCC-CAGC 843
Query 797 CTGCAAAGCCCAAGGAGGAGCCTAAG---AAGGCGGCCCCTGTTGCAGAGGCACCAAAGC 853
||||||||||||| || ||||||||| |||| ||||| || ||||||||||| ||||
Sbjct 844 CTGCAAAGCCCAAAGAAGAGCCTAAGAAAAAGGAAGCCCCAGTAGCAGAGGCACCTAAGC 903
Query 854 CTGCTGAGGAGGAAGAAGCACCAAAGCCTAAAGCCAAGAATCCTCTCGATTTGCTACCAC 913
|||||| |||||||| ||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 904 TTGCTGAAGAGGAAGAGGCACCAAAGCCCAAAGCCAAGAACCCTCTTGACTTGCTACCAC 963
Query 914 CAAGCCCAATGGTTCTTGATGACTGGAAGAGGCTTTACTCGAACACCAAATCCAACTTCC 973
||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 964 CAAGCCCTATGGTTCTAGATGATTGGAAGAGGCTTTACTCAAACACCAAATCTAACTTCC 1023
Query 974 GTGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGGTACTCACTATGGT 1033
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1024 GCGAGGTTGCTATTAAAGGATTCTGGGACATGTATGACCCAGAGGGATACTCACTATGGT 1083
Query 1034 TCTGTGACTACAAGTACAACGATGAGAACATGGTCTCCTTTGTTACACTCAACAAGGTAG 1093
|||||||||||||||||||||||||||||||||| || ||||| || ||||||||||| |
Sbjct 1084 TCTGTGACTACAAGTACAACGATGAGAACATGGTGTCATTTGTCACGCTCAACAAGGTTG 1143
Query 1094 GAGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTCGGAAAGATGCTGATTT 1153
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1144 GTGGGTTCCTTCAGCGTATGGACTTGGCACGTAAATACTCCTTTGGAAAGATGCTGATTT 1203
Query 1154 GCGGGTCAGAGGGTCCTTTCAAGGTGAAGGGTTTATGGCTCTTCCGTGGACCAGAGATCC 1213
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1204 GTGGGTCAGAGGGTCCGTTCAAGGTGAAGGGTTTATGGCTGTTCCGTGGACCAGAGATCC 1263
Query 1214 CTAAGTTCATAATGGATGAGGTGTACGACATGGAGCTGTACGAGTGGACTAAGGTTGATA 1273
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1264 CAAAGTTCATAATGGACGAGGTGTACGACATGGAGCTGTATGAGTGGACTAAGGTTGATA 1323
Query 1274 TCTCAGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCCGAGCCATTTG 1333
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1324 TCTCAGATGAAGCCCAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCAGAGCCATTTG 1383
Query 1334 AAGGCGAGGCTCTTTTGGACGCCAAATGCTTTAAGTGAAAAG 1375
|||| |||||||| ||||||||||| ||||| |||||| |||
Sbjct 1384 AAGGTGAGGCTCTCTTGGACGCCAAGTGCTTCAAGTGAGAAG 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74096004420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5