BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474859
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57750.1 | Symbols: MAH1, CYP96A15 | cytochrome P450, family... 2290 0.0
AT1G57740.1 | Symbols: | pseudogene, putative cytochrome P450,... 211 2e-53
> AT1G57750.1 | Symbols: MAH1, CYP96A15 | cytochrome P450, family
96, subfamily A, polypeptide 15 | chr1:21383981-21385709
REVERSE LENGTH=1729
Length=1729
Score = 2290 bits (1240), Expect = 0.0
Identities = 1428/1518 (94%), Gaps = 15/1518 (1%)
Strand=Plus/Plus
Query 30 CGTAGCATTCCTTTT-TTCTCTTGTATTTCTTTTTACTTGTTTCTTCATCCACAAGAAAC 88
|||| | ||| |||| || |||||||| || ||||||| ||||||| |||| |||||||
Sbjct 51 CGTAACGTTCATTTTCTT-TCTTGTATGCCTATTTACTTATTTCTTCCTCCAAAAGAAAC 109
Query 89 CTCACGGTCAGCCTATTCTCAAGAACTGGCCGTTCCTCGGGATGCTTCCAGGAATGCTCC 148
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 110 CTCAAGGTCAGCCTATTCTCAAGAACTGGCCGTTCCTCAGGATGCTTCCAGGAATGCTCC 169
Query 149 CCCAAATCCCTCGTATTTACGACTGGACTGTCGAGGTGCTTGAGGCGAGCAATCTAACCT 208
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 170 ACCAAATCCCTCGTATCTACGACTGGACCGTCGAGGTGCTTGAGGCGACCAATCTAACTT 229
Query 209 TTTATTTCAAAGGGCCATGGCTTAGTGGAACGGACATGTTGTTCACCGCGGATCCAAAGA 268
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 230 TTTATTTCAAAGGGCCATGGCTTAGTGGAACGGACATGTTGTTCACCGCCGATCCAAGGA 289
Query 269 ATA-TCAATCACATACTAAGCTCAAACTTTGGGAATTACCCTAAAGGACCTGAGTTCAAG 327
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ATATTC-ATCACATACTAAGCTCAAACTTTGGGAATTACCCTAAAGGACCTGAGTTCAAG 348
Query 328 AAAATCTTTGATGTTTTGGGAGAGGGAATCTTAACCGTTGATCTGGAGTTGTGGGAGGAT 387
|| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||
Sbjct 349 AAGATCTTTGATGTTTTGGGAGAAGGAATCTTAACCGTTGATTTTGAGTTGTGGGAGGAG 408
Query 388 CTGAGGAAGTCAAATCACGCCATGTTTCACAATCAAGATTTCCTCGAGCTCTCACTAAGT 447
|||||||||||||||||||| | || ||||||||||||||| ||||||||||| |||||
Sbjct 409 ATGAGGAAGTCAAATCACGCCCTATTCCACAATCAAGATTTCATCGAGCTCTCAGTAAGT 468
Query 448 AGCAACAAAAGTAAGTTAAAGGAAGGTCTTGTTCCTTTTCTTGATAATGCTGCTCATG-A 506
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 469 AGCAATAAAAGTAAGTTAAAAGAAGGTCTTGTTCCTTTTCTTGATAATGCTGCTCA-GAA 527
Query 507 AAACATTATCATAGATTTACAAGATGTGTT-CATGAGATTCATGTTTGATACTTCTTCAA 565
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 528 AAACATTATCATAGAATTACAAGATGTGTTCCA-GAGATTCATGTTTGATACTTCTTCAA 586
Query 566 TTTTGATGACTGGTTATGATCCAATGTCACTATCCATCGAAATGCTGGAAGTTGAGTTCG 625
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTTTGATGACTGGTTACGATCCAATGTCACTATCCATCGAAATGCTGGAAGTTGAGTTCG 646
Query 626 GTGAAGCTGCGGATATTGGCGAAGAAGCAATCTACTATAGACATTTCAAACCGGTGATGT 685
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 647 GTGAAGCTGCGGATATTGGCGAAGAAGCAATCTATTATAGACATTTCAAACCGGTGATCT 706
Query 686 TGTGGAGGCTTCAAAACTGGCTTGGTATTGGACTTGAGAGGAAGATGAGAACAGCTTTGG 745
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 707 TGTGGAGGCTTCAAAACTGGATTGGTATTGGGCTTGAGAGGAAGATGAGAACAGCTTTGG 766
Query 746 CCACGGTCAATCGTATGTTTGCAAAGATCATATCTTCAAGAAGAAAAGAGGAGATAAGTC 805
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 767 CCACTGTCAATCGTATGTTTGCGAAGATCATATCTTCAAGAAGAAAAGAGGAGATAAGTC 826
Query 806 GTGGGGAAACCGAGCC--A-TCCAAGGACGCGTTGACGTATTATATGAATGTGGACACGA 862
| | |||| ||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GCGCCAAAACGGAGCCATATTCCAAGGACGCGTTGACGTATTATATGAATGTGGACACGA 886
Query 863 CCAAATATAAGCTCTTGAAACCGAA-AAATGATACGTTTATAAGAGATGTTATTTTTAGT 921
||||||||||||||||||||| || ||| |||| |||||||||||||||||||||||||
Sbjct 887 GCAAATATAAGCTCTTGAAACCTAATAAA-GATAAGTTTATAAGAGATGTTATTTTTAGT 945
Query 922 CTAGTGTTAGCAGGAAGGGACACCACAAGCTCAGCTCTCACTTGGTTCTTTTGGCTTCTT 981
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 946 CTAGTGTTAGCAGGAAGGGACACCACAAGCTCAGTTCTCACTTGGTTCTTTTGGCTTCTT 1005
Query 982 TCTAAGCATCCTCAAGTTATGGCCAAGATCAGACATGAGATCAACACAAAGTATGATCCT 1041
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 1006 TCTAAGCATCCTCAAGTTATGGCCAAGCTCAGACATGAGATCAACACAAAGTTTGATAAT 1065
Query 1042 GAAGATCTAGAGAAGCTCGTGTATCTGCATGCTGCATTGTCCGAATCAATGAGACTCTAC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GAAGATCTAGAGAAGCTCGTGTATCTGCATGCTGCATTGTCCGAATCAATGAGACTCTAC 1125
Query 1102 CCGCCACTTCCCTTCAACCACAAGGCTCCTGCAAAGCCAGATGTGCTTCCAAGCGGGCAC 1161
|||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1126 CCGCCACTTCCCTTCAACCACAAGTCTCCTGCGAAGCCAGATGTACTTCCAAGCGGGCAC 1185
Query 1162 AAAGTTGAACCAGAAT-CAAAGATCGTGATTTGTATTTACGCCTTGGGGAGGATGAGATC 1220
|||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||
Sbjct 1186 AAAGTTGATGCA-AATTCAAAGATCGTGATATGTATCTATGCATTGGGGAGGATGAGATC 1244
Query 1221 TGTATGGGGAGAAGATGCATCGGATTTCAAACCAGAGAGATGGATTTCAGACAATGGAGG 1280
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1245 TGTATGGGGAGAAGACGCATTGGATTTCAAACCAGAGAGATGGATTTCAGACAATGGAGG 1304
Query 1281 TCTAAGACATGAACCTTCATACAAGTACGTGGCGTTTAATTCTGGTCCGAGAACTTGCTT 1340
|||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||
Sbjct 1305 TCTAAGACATGAACCTTCATACAAGTTCATGGCTTTTAATTCTGGTCCGAGAACTTGCTT 1364
Query 1341 GGGTAAACATCTAGCTCTCTTGCAGATGAAGATAGTAGCTCTGGAGATCATAAAAAACTA 1400
||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1365 GGGTAAAAATCTAGCTCTCTTGCAGATGAAGATGGTAGCTCTGGAGATCATACGAAACTA 1424
Query 1401 TGACTTTAAGGTCATTGAAGGTCACAAGATCGAAGCAATTCCTTCTATCCTTCTCCGTAT 1460
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1425 TGACTTTAAGGTCATTGAAGGTCACAAGGTCGAACCAATTCCTTCTATCCTTCTCCGTAT 1484
Query 1461 GAAACATGGTCTTAAAGTCACAGTCACTAAGAAGATGTGATTATTATGCTTGCTTGGCTT 1520
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1485 GAAACATGGTCTTAAAGTCACAGTCACAAAGAAGATATGATTATTATGCTTGCTTGGCTT 1544
Query 1521 CTACGGTAACTATTACTA 1538
|||||| |||||||||||
Sbjct 1545 CTACGGCAACTATTACTA 1562
> AT1G57740.1 | Symbols: | pseudogene, putative cytochrome P450,
blastp match of 77% identity and 2.0e-12 P-value to GP|8096593|dbj|BAA96166.1||AP002092
unnamed protein product {Oryza
sativa (japonica cultivar-group)} | chr1:21382131-21383304
FORWARD LENGTH=1174
Length=1174
Score = 211 bits (114), Expect = 2e-53
Identities = 148/164 (90%), Gaps = 3/164 (2%)
Strand=Plus/Plus
Query 871 AAGCTCTTGAAACCGAAAAATGATACGTTTATAAGAGATGTTATTTTTAGTCTAGTGTTA 930
||||| ||||||| || |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 951 AAGCTTTTGAAACGGAGAAATGATAAGTTTATAAGAGATGTGGTTTTTAGTCTAGTGTTA 1010
Query 931 GCAGGAAGGGACACCAC-AA--GCTCAGCTCTCACTTGGTTCTTTTGGCTTCTTTCTAAG 987
|||||||| || ||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 1011 GCAGGAAGAGATACCACAAATTGATCAGCTCTCACTTGGTTCTTTTGGCTTCTTTCTAAG 1070
Query 988 CATCCTCAAGTTATGGCCAAGATCAGACATGAGATCAACACAAA 1031
||||| || |||||| |||||||||| |||||||||||||||||
Sbjct 1071 CATCCACATGTTATGTCCAAGATCAGCCATGAGATCAACACAAA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78011646930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5