BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474862
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G57765.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 798 0.0
> AT1G57765.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G09645.1). |
chr1:21393351-21394962 FORWARD LENGTH=773
Length=773
Score = 798 bits (432), Expect = 0.0
Identities = 629/717 (88%), Gaps = 41/717 (6%)
Strand=Plus/Plus
Query 19 AACATTGGAAG---CTTCTT-C--TTCTGCTGCTGCCAGAGAAGAATCGGTCCTCCCTTG 72
||||||||||| |||||| | |||| || |||||| | | ||||||||||| | |||
Sbjct 51 AACATTGGAAGCTTCTTCTTCCTATTCTTCTTCTGCCAAACAGGAATCGGTCCTTCTTTG 110
Query 73 CGTACAATC-AAACTCCAAGAGACATCGAGAGATGAGAGAGATCTCGATCTCGACGCTTA 131
|| |||| | ||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 111 CGCACAAGCAAAAATCCAAGAGACATCGAGATATGAGAGAGATCTCGATCTCGACGATTA 170
Query 132 CTCTTTCATGGTCACATCTTCTACTCTTCGCTTCGA-TT-TCT---C-TC--C--A-C-- 178
||||||||||||| ||||||||||||| |||||||| || ||| | || | | |
Sbjct 171 CTCTTTCATGGTCGCATCTTCTACTCTGCGCTTCGATTTGTCTCCACTTCTTCTTAGCAA 230
Query 179 -----T-TC--G--TC----T-T-AG-GTATATCCGGTGATTCCAATAGTTCAAGTACTG 221
| || | || | | || ||||||| |||||| ||||||||||||||||||
Sbjct 231 TGTTGTATCTTGATTCTGTGTATCAGTGTATATCTGGTGATCCCAATAGTTCAAGTACTG 290
Query 222 GAGCAAAGGCTGAATCTCGTACTTCTTCCGGCAAAACAGGCACGAAAGTGATCCTCGTAT 281
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||
Sbjct 291 GAGCAAAGGCTGAATCTCATACTTCTTCCAGCAAAACAGGCACGAAAGTGATCTTTATAC 350
Query 282 TGCTTGGGTTTGGTGCTGTAGCGGGAGTATCGTTCTTCCTGTACAAACTGTGGCAAAAGA 341
|||| ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||
Sbjct 351 TGCTCGGGTTTGGTGCTGTAGCGGGACTTTCGTTCTTCTTGTACAAACTGTGGCAAAAGA 410
Query 342 AGAAAAGAGATGAGCAGTATGCTCGGTTATTGAAACTGTTTGAGGAAGATGATGAACTGG 401
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 411 AGAAAAGAGATGAGCAGTATGCTCGGCTATTGAAACTGTTTGAGGAAGATGATGAACTCG 470
Query 402 AGGTTGAATTAGGCCTTCGTGATTAAGAAAAAAGCAATGTCTGAG-TAGTATGAGCAAGA 460
|||||||||||||||| |||||||||||| ||||||||||||||| | ||||||| | ||
Sbjct 471 AGGTTGAATTAGGCCTACGTGATTAAGAAGAAAGCAATGTCTGAGGT-GTATGAG-ATGA 528
Query 461 TCATACAGGCATTGGAAATATTGAAGTATATATATACTTAAAATGATGTAATTGTGATTG 520
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 529 TCATACAGGCATTGGAAATATTGAAGTATATATATACTTAAGCTGATGTAATTGTGATTG 588
Query 521 ATCATTTTGAATTCTCTGGCTGATCTCGCCGTTGGAGGCTCTAGAGAAATTGTT-CTTCT 579
||||||| ||||||||||| ||||||||||||| |||||||| |||||| |||| ||||
Sbjct 589 ATCATTTCGAATTCTCTGGGTGATCTCGCCGTTTGAGGCTCTGGAGAAAGTGTTTCTTCA 648
Query 580 TTAGCGTTAGGTCAATTCTTGTAAAACAATTAAATTTCTCAACTTCTTCCATGTTCTTTG 639
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 649 TTAGCGTTAGGTCAATTATTGTAAAACATTTAAATTTCTCAACTTCTTCCATGTTCTTTG 708
Query 640 ATTTGCCATTTTTACAATTTAGATATTTGTCTCGGATCAACCAAGAATCATACATAT 696
||||| || ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 709 ATTTGTTGCTTGTACAATTTAGATATTTGTCTCAGATCAACCAAGAATCATACATAT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5