BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474873

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1199    0.0  


> AT1G64700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; EXPRESSED 
IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT3G61920.1); Has 48 Blast hits to 47 proteins in 7 
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI 
BLink). | chr1:24039810-24040595 REVERSE LENGTH=786
Length=786

 Score = 1199 bits (649),  Expect = 0.0
 Identities = 730/768 (95%), Gaps = 9/768 (1%)
 Strand=Plus/Plus

Query  1    AGACTATagagagagagagCATGGAGTAGGCAAGAAGAGCACACAAACCAAGCATGGGAA  60
            ||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct  1    AGACTATAGAGCGAGAGAGCATGGAGTAGGCAAGAAGAGCACACAAGTCAAGCATGGGAA  60

Query  61   ACTGTTTATTCGGAGGGTTAGGCGACGAAGAGGAAGACTTATTAATCAAAGTCATAAAAT  120
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  61   ACTGTTTATTCGGAGGGTTAGGCGACGAAGAGGAAGACTTATTGATCAAAGTCATAAAAT  120

Query  121  CCGACGGTGGAGTTCTTGAGTTCTACTCCCCCGTCACCGCGGGCTACGTCTCCCACGAAT  180
            |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||
Sbjct  121  CCGACGGTGGAGTTCTTGAGTTCTACTCCCCCGTTACCGCGGGCTTTGTCTCCCACGGAT  180

Query  181  TCTCAGGCCATGCTCTTTTCTCGGCTCTTGATCTCCTCTGGAAACCCCTGCCTCACGACC  240
            |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  181  TCTCAGGCCATGCTCTTTTCTCGGCTGTTGATCTCCTCTGGAAACCCCTGGCTCACGACC  240

Query  241  ACCTCCTCGTGCCCGGTCAGTCCTACTATCTCTTTCCCAATATTGTCTCCGACGAGTTGA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACCTCCTCGTGCCCGGTCAGTCCTACTATCTCTTTCCCAATATTGTCTCCGACGAGTTGA  300

Query  301  AGACTTTTGTGGGAAGCTGCCACGTGAGATCCAACAGCGAGTCCTTGCCAGCGATAACTC  360
            ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct  301  AGACTTTTGTGGGAAGCTGCCACGTGAGATCCAACAGCGAGTCCTTGTCTGCGATAACTC  360

Query  361  CGTACAGAATGTCTCTGGATTACAACCACAGGGTGTTGAAGAGATCATACACGGACGTTT  420
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  361  CGTACAGAATGTCTCTGGATTACAACCACAGGGTGTTGAAGCGATCATACACGGACGTTT  420

Query  421  TCTCAAGAAACAACCACACAAGGACCCGACAGAAGGAGAAGAAGACGAGGAGGAGACGTA  480
            | |||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct  421  TTTCAAGAAACAGCCACATAAGGACCCGACAAAAGGAGAAGAAAACGAGGAGGAGACGTA  480

Query  481  CGATCAGCAAAGGTGGAATTTGGAAAGTGAAGCTGATCATAAACACTGAAGAGCTGTTAC  540
            ||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  481  CGAGCAGCAAAGGTGCAATATGGAAAGTGAATCTGATCATAAACACTGAAGAGCTGTTAC  540

Query  541  AGATTCTGTCTGAAGATGGAAGAACAAATGAGCTAATAGAGAGTGTGAGAGCCGTGGCCA  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  541  AGATTCTGTCTGAAGATGGAAGAACAAATGAGCTAATAGAGAGTGTGAGAGCCGTAGCCA  600

Query  601  AGGGTGAAAACGTCGTCACATCGAGCATCACAAGTGGTTCGTCCGAGAATGTCTTGTCGG  660
            ||||||||| |      |  ||||||||||||||| |||||||||||||| |||||||||
Sbjct  601  AGGGTGAAA-C------A--TCGAGCATCACAAGTAGTTCGTCCGAGAATTTCTTGTCGG  651

Query  661  TGGTACATACCTAGATTTTTATTTCTGGTAGATTTTAATTCCCTATATTTAAATGTGTGG  720
            ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  652  TGGTACAGACCTAGAATTTGATTTCTGGTAGATTTTAATTCCCTATATTTAAATGTGTGG  711

Query  721  TTAATGTTATAACTTATAAGTAATGAAGTCTGTTATCTTGCACCAATT  768
            ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  712  TTAATGTTATAACTTATAAGTAATGAAGTATGTTATCTTGCACCAATT  759



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37323971221


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5