BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg474875 Length=1083 Score E Sequences producing significant alignments: (Bits) Value AT1G64680.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1749 0.0 > AT1G64680.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24036021-24037401 FORWARD LENGTH=1142 Length=1142 Score = 1749 bits (947), Expect = 0.0 Identities = 1040/1085 (96%), Gaps = 6/1085 (1%) Strand=Plus/Plus Query 1 GATGGTGGTAGGGAAAAAGAGCAAAGAGGGCGAGAGATATCTTCTTCTTATCCATGGCGG 60 ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| Sbjct 1 GATGGTGGTAGGGAAGAAGAGCAACGAGGGCGAGAGATA---TCTTCTTATCCATGGCGG 57 Query 61 CTATTGCTAGTTTGCAAGCAGTTAATCTCACACTTAGGCGACGTGGCACTCGATGTGGGA 120 ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| | Sbjct 58 CTATTGCTAGTCTGCAAGCAGTTAATCTCACATTTAGGCGACGTAGCACTCGATGTGGAA 117 Query 121 TTGCGGAGCCGAGCGGAGAGCCAGCTCCAATGGGGCTGAAGACTAGATACGACGATGGGT 180 |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 118 TTGCTGAGCCGAGCGGAGAGCCAGCTCCGATGGGGCTGAAGACTAGATACGAGGATGGGC 177 Query 181 TGGTGGAGAGAGTGTTCATGGGCCTGTTCGCGAGGAAGATGGACAAGTTCGGGTCGAAGA 240 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 178 TGGTGGAGAGAGTGTTCATGGGTCTCTTCGCGAGGAAGATGGACAAGTTCGGGTCGAAGA 237 Query 241 AGAAGAAGGAAACGAAGGAGAAGGGTTATTGGGAGTACGATTACGAGAGCTTCGTGGAGG 300 |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 238 AGAAGAAGGACACGAAGGAGAAGGGTTTTTGGGAGTACGATTACGAGAGCTTCGTGGAGG 297 Query 301 TGTCAAAGAGAGTGATGCAGGGACGGTCCAGAGTGCAGCAGCAAGAGGCCGTGAGGGAGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TGTCAAAGAGAGTGATGCAGGGACGGTCCAGAGTGCAGCAGCAAGAGGCCGTGAGGGAGG 357 Query 361 TTCTTCTCTCTATGCTGCCTCCTGGTGCTCCTCAACAGTTTAGAAAATTGTTCCCACCAA 420 |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| Sbjct 358 TTCTTCTCTCTATGCTGCCTCCTGGTGCTCCTGAACAGTTTAGGAAATTGTTCCCACCAA 417 Query 421 CGAAATGGGCTGCAGAGTTCAATGCCGCTCTTACAGTGCCTTTCTTTCACTGGTTGGTTG 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 CGAAATGGGCTGCAGAGTTCAATGCCGCTCTTACAGTGCCTTTCTTTCACTGGTTGGTTG 477 Query 481 GTCCTTCTCAGGTCATAGAAGTGGAAGTGAATGGTGTGAAACAGAGAAGTGGAGTTCGTA 540 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 GTCCATCTCAGGTCATAGAAGTGGAAGTGAATGGTGTGAAACAGAGAAGTGGAGTTCGTA 537 Query 541 TAAAGAAATGCAGGTATTTGGAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCA 600 | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 538 TCAAGAAATGCAGGTATCTGGAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCA 597 Query 601 AGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 598 AGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAA 657 Query 661 ATTTTGAAGACATGAGCTGCGAGATGATATACGGGCAAGCGCCTCCGGCCTTTGAGGAGG 720 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 658 ATTATGAAGACATGAGCTGCGAGATGATATACGGGCAAGCACCTCCGGCCTTTGAGGAGG 717 Query 721 ATGTAGCCACCAAACAACCTTGTCTAGCAGACATATGTTCTATGTCCACTCCAAGCTCCC 780 ||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||| Sbjct 718 ATGTAGCCACCAAGCAACCTTGTCTAGCAGATATATGTTCTATGTCGAATCCAAGCTCCC 777 Query 781 CAATCTGCCCTAAACTAGAGGCATGAGTGGATTGGATCAGCAGCCACTTCTTTTATGGGA 840 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| Sbjct 778 CAATCTGCCCTAAACTAGAGGCATGAGTGGAGTGGATCAGCAGCCACTTCTTTGACGGGA 837 Query 841 TGTGCAACTTCCAAGAGATATACATACTTTGTTT-TTT-CCAAACACATACATTACATAT 898 ||||||| ||||||| |||||||||||||| ||| ||| ||||||||||||||||||||| Sbjct 838 TGTGCAATTTCCAAGCGATATACATACTTTTTTTCTTTTCCAAACACATACATTACATAT 897 Query 899 AAAAGACAGTTGTGAAGACGAGTTAGTGTTCTGTGTTACTATTTTCGTTGGGTTGTGTAA 958 |||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||| Sbjct 898 AAAAGACAGTTGTGAAGACGAGTTAGTGTTCTTTGTTACTATTCTGGTTGGGTTGTGTAA 957 Query 959 AGTATACGATTAATACACTTGAGATTACTCATCTTCTTTGTGTTCTATGTTTGAACTCGC 1018 |||||||||| |||||||||||| ||||||||||||||| |||| || |||||||||||| Sbjct 958 AGTATACGAT-AATACACTTGAGCTTACTCATCTTCTTTATGTTTTAAGTTTGAACTCGC 1016 Query 1019 CATGCTGGTTATAACTTGGATCTCAAGTGTTACTTGCAGTTTGTATTGTAATATAAAACC 1078 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1017 CATGTTGGTTATAACTTGGATCTCAAGTGTTACTTGCAGTTTGTATTGTAATATAAAACC 1076 Query 1079 AAAAA 1083 ||||| Sbjct 1077 AAAAA 1081 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53061976065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5