BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474875
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64680.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1749 0.0
> AT1G64680.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G03055.1);
Has 146 Blast hits to 146 proteins in 26 species: Archae -
0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses
- 0; Other Eukaryotes - 15 (source: NCBI BLink). | chr1:24036021-24037401
FORWARD LENGTH=1142
Length=1142
Score = 1749 bits (947), Expect = 0.0
Identities = 1040/1085 (96%), Gaps = 6/1085 (1%)
Strand=Plus/Plus
Query 1 GATGGTGGTAGGGAAAAAGAGCAAAGAGGGCGAGAGATATCTTCTTCTTATCCATGGCGG 60
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 GATGGTGGTAGGGAAGAAGAGCAACGAGGGCGAGAGATA---TCTTCTTATCCATGGCGG 57
Query 61 CTATTGCTAGTTTGCAAGCAGTTAATCTCACACTTAGGCGACGTGGCACTCGATGTGGGA 120
||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 58 CTATTGCTAGTCTGCAAGCAGTTAATCTCACATTTAGGCGACGTAGCACTCGATGTGGAA 117
Query 121 TTGCGGAGCCGAGCGGAGAGCCAGCTCCAATGGGGCTGAAGACTAGATACGACGATGGGT 180
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 118 TTGCTGAGCCGAGCGGAGAGCCAGCTCCGATGGGGCTGAAGACTAGATACGAGGATGGGC 177
Query 181 TGGTGGAGAGAGTGTTCATGGGCCTGTTCGCGAGGAAGATGGACAAGTTCGGGTCGAAGA 240
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 178 TGGTGGAGAGAGTGTTCATGGGTCTCTTCGCGAGGAAGATGGACAAGTTCGGGTCGAAGA 237
Query 241 AGAAGAAGGAAACGAAGGAGAAGGGTTATTGGGAGTACGATTACGAGAGCTTCGTGGAGG 300
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 AGAAGAAGGACACGAAGGAGAAGGGTTTTTGGGAGTACGATTACGAGAGCTTCGTGGAGG 297
Query 301 TGTCAAAGAGAGTGATGCAGGGACGGTCCAGAGTGCAGCAGCAAGAGGCCGTGAGGGAGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGTCAAAGAGAGTGATGCAGGGACGGTCCAGAGTGCAGCAGCAAGAGGCCGTGAGGGAGG 357
Query 361 TTCTTCTCTCTATGCTGCCTCCTGGTGCTCCTCAACAGTTTAGAAAATTGTTCCCACCAA 420
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 358 TTCTTCTCTCTATGCTGCCTCCTGGTGCTCCTGAACAGTTTAGGAAATTGTTCCCACCAA 417
Query 421 CGAAATGGGCTGCAGAGTTCAATGCCGCTCTTACAGTGCCTTTCTTTCACTGGTTGGTTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGAAATGGGCTGCAGAGTTCAATGCCGCTCTTACAGTGCCTTTCTTTCACTGGTTGGTTG 477
Query 481 GTCCTTCTCAGGTCATAGAAGTGGAAGTGAATGGTGTGAAACAGAGAAGTGGAGTTCGTA 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GTCCATCTCAGGTCATAGAAGTGGAAGTGAATGGTGTGAAACAGAGAAGTGGAGTTCGTA 537
Query 541 TAAAGAAATGCAGGTATTTGGAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCA 600
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TCAAGAAATGCAGGTATCTGGAGAACAGTGGGTGTGTAGGAATGTGTGTGAATATGTGCA 597
Query 601 AGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGATTCCAACCCAAGATTTCTTCACCAATGAGTTTGGCCTCCCACTCACCATGAACCCAA 657
Query 661 ATTTTGAAGACATGAGCTGCGAGATGATATACGGGCAAGCGCCTCCGGCCTTTGAGGAGG 720
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 658 ATTATGAAGACATGAGCTGCGAGATGATATACGGGCAAGCACCTCCGGCCTTTGAGGAGG 717
Query 721 ATGTAGCCACCAAACAACCTTGTCTAGCAGACATATGTTCTATGTCCACTCCAAGCTCCC 780
||||||||||||| ||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 718 ATGTAGCCACCAAGCAACCTTGTCTAGCAGATATATGTTCTATGTCGAATCCAAGCTCCC 777
Query 781 CAATCTGCCCTAAACTAGAGGCATGAGTGGATTGGATCAGCAGCCACTTCTTTTATGGGA 840
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 778 CAATCTGCCCTAAACTAGAGGCATGAGTGGAGTGGATCAGCAGCCACTTCTTTGACGGGA 837
Query 841 TGTGCAACTTCCAAGAGATATACATACTTTGTTT-TTT-CCAAACACATACATTACATAT 898
||||||| ||||||| |||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 838 TGTGCAATTTCCAAGCGATATACATACTTTTTTTCTTTTCCAAACACATACATTACATAT 897
Query 899 AAAAGACAGTTGTGAAGACGAGTTAGTGTTCTGTGTTACTATTTTCGTTGGGTTGTGTAA 958
|||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 898 AAAAGACAGTTGTGAAGACGAGTTAGTGTTCTTTGTTACTATTCTGGTTGGGTTGTGTAA 957
Query 959 AGTATACGATTAATACACTTGAGATTACTCATCTTCTTTGTGTTCTATGTTTGAACTCGC 1018
|||||||||| |||||||||||| ||||||||||||||| |||| || ||||||||||||
Sbjct 958 AGTATACGAT-AATACACTTGAGCTTACTCATCTTCTTTATGTTTTAAGTTTGAACTCGC 1016
Query 1019 CATGCTGGTTATAACTTGGATCTCAAGTGTTACTTGCAGTTTGTATTGTAATATAAAACC 1078
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CATGTTGGTTATAACTTGGATCTCAAGTGTTACTTGCAGTTTGTATTGTAATATAAAACC 1076
Query 1079 AAAAA 1083
|||||
Sbjct 1077 AAAAA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5