BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474876
Length=1724
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64650.1 | Symbols: | Major facilitator superfamily protein... 2837 0.0
> AT1G64650.1 | Symbols: | Major facilitator superfamily protein
| chr1:24023498-24026421 REVERSE LENGTH=1781
Length=1781
Score = 2837 bits (1536), Expect = 0.0
Identities = 1645/1697 (97%), Gaps = 10/1697 (1%)
Strand=Plus/Plus
Query 34 TGCGAGATCTGATCGTATCAATGGAGATCTTCTACTTCGTGGTGTTCGGTGGGTTGGCTG 93
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 66 TGCGAGATCTGATCGTATCAATGGAGATCTTCTACTTCGTGGTGTTCGGTGGCCTGGCTG 125
Query 94 CGATCGTCGCCGGCTTGGAGCTGAGCAAATCGAACAAAGACCGCATTAACACCTCCTCCG 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CGATCGTCGCCGGCTTGGAGCTGAGCAAATCGAACAAAGACCGCATTAACACCTCCTCCG 185
Query 154 CCTTCAACTCCTTCAAGAACAACTATCTCCTCGTCTACTCTCTCATGATGGCTGGGGACT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CCTTCAACTCCTTCAAGAACAACTATCTCCTCGTCTACTCTCTCATGATGGCTGGGGACT 245
Query 214 GGTTGCAGGGTCCGTATGTGTACTATCTCTACAGCACTTATGGCTTCGGCAAGGGGGAGA 273
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 246 GGTTGCAGGGTCCGTATGTGTACTATCTCTACAGCACTTATGGCTTTGGAAAGGGAGAGA 305
Query 274 TCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGAT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 TCGGTCAGCTCTTTATTGCTGGTTTTGGATCTTCCATGTTGTTTGGCACCATTGTTGGAT 365
Query 334 CTCTTGCCGACAAACAGGGTCGCAAGCGAGCTTCTATCACCTACTGCATTACCTACATTC 393
|||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 366 CTCTTGCCGACAAACAGGGTCGCAAGAGAGCTTCTATCACCTACTGTATCACCTACATTC 425
Query 394 TCAGCTGTATCACCAAACATTCTCCCCAGTACAAAGTTTTGATGGTCGGTCGTGTTCTTG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TCAGCTGTATCACCAAACATTCTCCCCAGTACAAAGTTTTGATGGTCGGTCGTGTTCTTG 485
Query 454 GTGGTATCGCTACTTCTCTCCTTTTCTCTGCCTTTGAATCCTGGCTTGTCGCTGAGCACA 513
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 486 GTGGTATCGCTACTTCTCTCCTTTTCTCTGCCTTCGAATCCTGGCTCGTCGCTGAGCACA 545
Query 514 ACAAGAGAGGCTTCGAGCAGCAGTGGCTCTCTCTCACTTTCTCCAAGGCTATCTTCCTCG 573
|||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 546 ACAAGAGAGGCTTCGAGCAGCAGTGGCTTTCTGTCACTTTCTCCAAGGCTATTTTCCTCG 605
Query 574 GTAATGGATTAGTTGCCATCATTGCTGGACTCTTTGGCAATTTCCTTGTCGATTCTCTCG 633
||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 606 GTAATGGATTAGTCGCCATCATTGCTGGCCTCTTTGGCAATTACCTTGTCGATTCTCTCT 665
Query 634 CCCTCGGTCCTGTTGCTCCTTTCGATGCTGCTGCTTGCTTCCTTGCTATTGGTATGGCCG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CCCTCGGTCCTGTTGCTCCTTTCGATGCTGCTGCTTGCTTCCTTGCTATTGGTATGGCCG 725
Query 694 TTATTATTTCATCTTGGTCCGAAAACTATGGTGATCCCTCTGAAAACAAAGACCTTCTTA 753
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 726 TTATTATCTCATCTTGGTCCGAAAACTATGGAGATCCATCTGAAAACAAAGACCTTCTTA 785
Query 754 CCCAGTTCAAGAACGCTGCATCTGCCATTGCTTCTGATGAGAAGATCGCATTGCTTGGTG 813
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 786 CCCAGTTCAAGAACGCTGCATCTGCCATTGCTTCTGATGAGAAGATCGCATTACTCGGTG 845
Query 814 CCATACAGTCTCTCTTCGAAGGGTCCATGTACACCTTTGTGTTTCTCTGGACTCCTGCTT 873
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CTATTCAGTCTCTGTTTGAAGGGTCCATGTACACCTTTGTGTTTCTCTGGACTCCTGCTT 905
Query 874 TGAGCCCAAACGAAGAGGACATTCCACATGGTTTCATATTTGCAACATTCATGCTGGCTT 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TGAGCCCAAACGAAGAGGACATTCCACATGGTTTCATATTTGCAACATTCATGCTGGCTT 965
Query 934 CCATGCTTGGTAGCTCCATTGCCTCTCGTTTGTTGGCACATTCGTCTCCAAAAGTAGAGA 993
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 966 CGATGCTTGGTAGCTCCATTGCCTCTCGTTTGTTGGCACATTCGTCTCCAAAAGTAGAGA 1025
Query 994 GCTATATGCAGATCGTATTTGTGATATCTTCTGCAGCTCTAATGCTTCCTGTTGTAACAA 1053
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1026 GCTATATGCAGATCGTATTTGTGATATCTTCTGCTGCTCTAATGCTTCCTGTTGTAACAA 1085
Query 1054 GTTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCATTCTCTGGATGCATTC 1113
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1086 GCTTCTTGGTGGCGCCCTCAGGTGTAAAAGGTGGAAGCATATCCTTCTCTGGATGCATTC 1145
Query 1114 AGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCTTCTGGCCATCTATAATGA 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 AGTTAATGGGTTTCTGCACATTTGAAGCGTGTGTAGGAATCTTCTGGCCATCTATAATGA 1205
Query 1174 AGATGAGATCGCAATACATTCCAGAGGAAGCTAGAAGCACCATCATGAATTTTTTCCGCA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AGATGAGATCGCAATACATTCCAGAGGAAGCTAGAAGCACCATCATGAATTTTTTCCGCA 1265
Query 1234 TCCCACTCAACATCTTTGTCTGCCTTGTATTGTACAATGTTGACGCGTTTCCAATGACCG 1293
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1266 TCCCACTCAACATCTTTGTCTGCCTTGTATTATACAATGTTGACGCGTTTCCAATGACCG 1325
Query 1294 TGATGTTTGGAATGTGCTCTGTATTCCTTTTTGTGGCCTCTATATTGCAGAGGAGGTTGA 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TGATGTTTGGAATGTGCTCTGTATTCCTTTTTGTGGCCTCTATATTGCAGAGGAGGTTGA 1385
Query 1354 TGAATGTAGCCGAGATCCACAAGTCAAGATCACAAGAGTGGTCAGCAGAAAAGGAGATGA 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TGAATGTAGCCGAGATCCACAAGTCAAGATCACAAGAGTGGTCAGCAGAAAAGGAGATGA 1445
Query 1414 CCTCAGAAGCTGACCCTCTAAACCCATAATAACCAAATCTCTC-ATGACATaa-aaaaaa 1471
||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct 1446 CCTCAGAAGCTGACCCTCTAAACCCATAATAACCAAATCTC-CGATGACATAAGAAAAAA 1504
Query 1472 GAGGAAACGCCGTTCCGTCTTCTCTTGATGATTTTTCTACTTGTCTTAATACGTTCGTTG 1531
|| ||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1505 GAAGAAACGCCGTTCCGT-TTCTCTTTATGATTTTTCTACTTGTCTTAATATGTTCGTTG 1563
Query 1532 GTCATAAAGTCTTTCCACTTGTTTAGTTATATTTGGATTTTGTGCCTTCACCAGATGTAG 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GTCATAAAGTCTTTCCACTTGTTTAGTTATATTTGGATTTTGTGCCTTCACCAGATGTAG 1623
Query 1592 CAAACAC-CC-TAATACCTCTGCACGTCAGCTTATTTGGGCTCTGGCCACTATTCTTCTT 1649
||||||| || ||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1624 CAAACACACCCTAATACCTCTGCACGTCAGCTTATTTGGGCTTTAGCCACTATTCTTCTT 1683
Query 1650 AAATCTTTCAACTTTCTTTT--GTGCCTCAAAAACAATCTTTATAAGTCACGATATTGGC 1707
|||||||| ||||| |||| |||| |||||||||||||||||||||| ||| |||||
Sbjct 1684 GAATCTTTCTACTTTTTTTTTTGTGCGTCAAAAACAATCTTTATAAGTC--GATTTTGGC 1741
Query 1708 CCTGAACCATAGAAATG 1724
||| |||||||||||||
Sbjct 1742 CCTAAACCATAGAAATG 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85240525410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5