BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474878
Length=794
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64640.1 | Symbols: ENODL8, AtENODL8 | early nodulin-like pr... 1035 0.0
> AT1G64640.1 | Symbols: ENODL8, AtENODL8 | early nodulin-like
protein 8 | chr1:24022285-24023196 REVERSE LENGTH=818
Length=818
Score = 1035 bits (560), Expect = 0.0
Identities = 729/804 (91%), Gaps = 38/804 (5%)
Strand=Plus/Plus
Query 1 GCTTTGCTTTTCAGGAGATCTGAGAAGCAAAGTACACCACCAATAATCAAGCAAGATGGG 60
|||| |||||||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 1 GCTTAGCTTTTCAGGAGATCTGAGAAGCAAAGT--A-GACC---AAT----CAAGATGGG 50
Query 61 AGTCATGAGTTTGAGC-AGCACGATGATGGT-GT--TATTACAGGTGATGATATTGTTAG 116
||| |||||||||||| || |||||| |||| || |||||||||||||||||||||| |
Sbjct 51 AGTGATGAGTTTGAGCAAG-ACGATGGTGGTGGTGGTATTACAGGTGATGATATTGTTGG 109
Query 117 GACAAGAGATTGGTAAAGTGTCGTCGACTCTATACAAAGTTGGGGACTTGGACGCTTGGG 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 110 GACAAGAGATTGGTAAAGTGTCGTCGACTCTATACAAAGTTGGGGACTTGGACGCTTGGG 169
Query 177 GTATCCCAATTGATGCTAAAGTCTACACCAAATGGCCCAAATCTCACTCTTTCAAGATCG 236
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 170 GCATCCCAATTGATGCTAAAGTCTATTCCAAATGGCCCAAATCTCACTCTTTCAAGATCG 229
Query 237 GTGACTCCCTCTTGTTCTTGTACCCACCAAGCGAAGACTCACTGATTCAAGTGACGCCCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GTGACTCCCTCTTGTTCTTGTACCCACCAAGCGAAGACTCACTGATTCAAGTGACGCCCT 289
Query 297 CCAATTTCAAAAGCTGCAACACCAAAGACCCAATCTTGTATATGAACGACGGCAACTCTC 356
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 290 CCAATTTCAAGAGCTGCAACACCAAAGACCCAATCTTGTACATGAACGACGGCAACTCTC 349
Query 357 TCTTCAACCTCACCCAAAACGGTACCCTATACTTCACAAGTGCAAATCCCGGCCACTGTA 416
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 350 TCTTCAACCTCACCCAAAACGGAACCCTATACTTCACAAGTGCAAACCCCGGCCACTGTA 409
Query 417 CCAAGTACCAGAAGCTCCTCGTCTCCGTCGGCACCTACTCCGCCGAAGCAGAGGCCTTGT 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CCAAGTACCAGAAGCTCCTAGTCTCCGTCGGCACCTACTCCGCCGAAGCAGAGGCCTTGT 469
Query 477 CTCCGTCGTCTGCCGCCGACGGTCCCTCGTACCAAAACGCCTTCGGGTCTATCCCTCTCT 536
||||||| ||||||||||||| |||||| |||||||||||||||||||| || |||||||
Sbjct 470 CTCCGTCTTCTGCCGCCGACGCTCCCTCTTACCAAAACGCCTTCGGGTCCATTCCTCTCT 529
Query 537 CTCAGAAATCGTCGGCTACCTCCTCGCTCATTTCGGCTTTCTCCACTGTCGCTGCTTCGC 596
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 530 CTCAGAAATCGTCTGCTTCCTCCTCGCTCATTTCTGCTTTCTCCACTGTCGCTGCTTCGC 589
Query 597 TGGCTTGCGCTGTCGTCGGTGCAATCATGTGA---AATTG--GAAT-T-TTGAAT-AT-- 646
|||||||||||||||||||||||||||||||| |||| |||| | || | | ||
Sbjct 590 TGGCTTGCGCTGTCGTCGGTGCAATCATGTGATGGAATTTTTGAATATCTTTATTTATTA 649
Query 647 ---CTT----T-Att--tt-ttttt-gttttgtttt-GTTATGATCTCTTAATTATTTAT 693
| | ||| || ||||| |||||||||| ||||| |||||||||||||||||
Sbjct 650 AAGCAAACAGTCATTGCTTCTTTTTTGTTTTGTTTTTGTTATCATCTCTTAATTATTTAT 709
Query 694 TCTTCTTCATCGGCTCCGATCCTTTTATATCTCGACAATGAATATGCCAATTTCCTAAAC 753
|||||||||| |||||| ||| ||||||||||||| ||||||| ||||||||| ||||||
Sbjct 710 TCTTCTTCATTGGCTCCTATCTTTTTATATCTCGAAAATGAATTTGCCAATTTTCTAAAC 769
Query 754 TAGCAACAGATATATTCACACAAT 777
|| ||||||||| | ||||||||
Sbjct 770 TATTAACAGATATGTACACACAAT 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38630059043
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5