BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474883
Length=1571
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 2013 0.0
AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 58.4 2e-07
> AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:24006992-24008694 FORWARD LENGTH=1589
Length=1589
Score = 2013 bits (1090), Expect = 0.0
Identities = 1460/1623 (90%), Gaps = 88/1623 (5%)
Strand=Plus/Plus
Query 1 TTCAGAGTGTGTCAGAGTCAGACCAAACCCTTTCTC---T-TCTCTCTCTTACGAAGAAT 56
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 3 TTCAGAGTGTGTCAGAGTCAGACCAAACCCTTTCTCTTATCTCTCTCTCTTACGAAGAAT 62
Query 57 CCATC--AAATCCCAC--ACACACTATATACGTGTATCTTCTATATTCCTTTCATA-AAA 111
||||| ||||||||| |||||| ||||||||||||| | |||||||| |||| | |||
Sbjct 63 CCATCAAAAATCCCACATACACACAATATACGTGTATC-TATATATTCC-TTCAAATAAA 120
Query 112 AGTGACA-ATTTTTAAAACAATATAATTAAATTGTTTAAATTCTCTAGTTTCGTCTTCTT 170
||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AGTGACAGTTTTTTAAGA-AATATAATTAAATTGTTTAAATTCTCTTTTTTCGTCTTCTT 179
Query 171 CTTACTTTTaaaaaaaaaCCAGCTTTAACTTTCCACACACActtctcttttttctttctt 230
||| ||||| |||||||||||||| |||||||||||||| | || ||| ||
Sbjct 180 CTTGCTTTT--TCAAAAACCAGCTTTACCTTTCCACACACAC-T-TC----TTC---GTT 228
Query 231 tctctctctctctctctcCATAGCTTCTTCTTCAAG--GTTTTTGATCAGCTTCAAATTT 288
||||||||||||| ||||| ||||||| |||||||| ||||||||||||| |||||||
Sbjct 229 TCTCTCTCTCTCTTTCTCCTTAGCTTCCTCTTCAAGTTTTTTTTGATCAGCTGCAAATTT 288
Query 289 CCATAGCCATGGACACAGCTAAATGGCCTCAGGAGTTTGTTGTGAAGCCAATGAACGAGA 348
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CCATAGCCATGGACACTGCTAAATGGCCTCAGGAGTTTGTTGTGAAGCCAATGAACGAGA 348
Query 349 TCGTGACAAACACATGCCT--AA-AACAGCCGAATCATCCTCCTACTGCTACTCCGGTGG 405
||||||||||||||||||| || ||||| |||||| |||| || |||||||||| ||||
Sbjct 349 TCGTGACAAACACATGCCTAAAACAACAGTCGAATCCTCCTTCTCCTGCTACTCCTGTGG 408
Query 406 AAAGGAAGGCAAGACCGGAGAAAGACCAGGCTTTGAACTGTCCTAGATGCAACT-CTCTA 464
||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 409 AAAGGAAGGCAAGACCGGAGAAAGACCAGGCTTTGAACTGTCCAAGATGCAACTCCT-TA 467
Query 465 AACACCAAGTTCTGTTACTACAACAACTACAGCCTCACGCAGCCCAGGTACTTTTGTAAA 524
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 468 AACACCAAGTTCTGTTACTACAACAACTACAGCCTGACGCAGCCCAGGTACTTTTGTAAA 527
Query 525 GACTGCAGGAGGTATTGGACCGCAGGTGGTTCCCTCAGGAACATCCCCGTCGGTGGTGGC 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 528 GACTGCAGGAGGTATTGGACCGCAGGTGGTTCCCTCAGGAACATCCCCGTCGGTGGCGGC 587
Query 585 GTCCGCAAGAACAAGAGA------t-c---t--tcttcctcttcaccctcttcgtcttct 632
|||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct 588 GTCCGCAAGAACAAGAGATCTTCTTCCAATTCCTCTTCCTCTTCACCCTCTTCGTCTTCT 647
Query 633 tcttcCAAGAAACCTCTTTTTGCCCGCAACAACACGCCTCCGCCTCCTCTTCCTCAGCGT 692
||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| | |
Sbjct 648 TCTTCAAAGAAACCTCTTTTTGCCAACAACAACACGCCTACGCCTCCTCTTCCTCATCTT 707
Query 693 AACCCTGAGATTGGTGAAGCAGCGGCTACTAAAGTTCAAGACTTGACGTTTTCTCCGGGG 752
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 708 AACCCTAAGATTGGTGAAGCAGCCGCTACTAAAGTTCAAGACTTGACGTTTTCTCAAGGG 767
Query 753 TTTGGGAACGCCCACGAGGTTAAAGATCTCAACTTGGCGTTTTCTCAAGGGTTTGGGATT 812
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTTGGGAACGCCCACGAGGTTAAAGATCTCAACTTGGCGTTTTCTCAAGGGTTTGGGATC 827
Query 813 GCTCATCATCATCACAGTCACAGTAGTATCCCAGAGTTTCTGCAAGTAGTACCCAGCAGC 872
| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GGTCA-CA--ATCA---TCACAGTAGTATCCCAGAGTTTCTGCAAGTAGTACCCAGCAGC 881
Query 873 AGTATGAAGAACAACACACTTGTCTCAACTTCCTCGGCTTTGGAGCTTTTAGGGATCTCT 932
||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 882 AGTATGAAGAACAACCCACTGGTCTCAACTTCCTCGTCTTTGGAGCTTTTAGGGATCTCT 941
Query 933 ACTTCCTCTAATTC-T-T--C--ACGCCCTGCTTTCATGTCTTATCCAAATGTTCACGAT 986
| ||||||| ||| | | | ||||||||||||||||||||||||||||||||| |||
Sbjct 942 AGTTCCTCTGCTTCCTCTAACTCACGCCCTGCTTTCATGTCTTATCCAAATGTTCATGAT 1001
Query 987 TCATCGGTCTACACAGCGTCCGGGTTTGGTCTGAGTTACCCACAGTTTCAAGACTTCATG 1046
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1002 TCATCGGTCTACACAGCATCCGGGTTTGGTCTGAGTTACCCACAGTTTCAAGAGTTCATG 1061
Query 1047 AGACCGGCTTTGGGGTTCTCTCTTGATGGTGGGGATCCTCTACATCAAGAAGAGGGGTCC 1106
||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1062 AGACCAGCTTTGGGATTCTCTCTTGATGGTGGGGATCCTCTACGTCAAGAAGAGGGGTCC 1121
Query 1107 AGTGGCACTAATAATGGAAGGCCTTTGCTGCCATTCGAGAGCCTC---AAACTTCCAGTT 1163
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 1122 AGTGGCACTAATAATGGAAGGCCGTTGCTGCCATTTGAGAGCCTCCTCAAACTTCCAGTT 1181
Query 1164 TCATCATCAAGCACCAACAGTGGTGGTAATGACAATGTGAAAGAGATTAATGATCACCAT 1223
||||||||||||||||| |||||||| |||| |||| ||||||||| ||||||| | |||
Sbjct 1182 TCATCATCAAGCACCAATAGTGGTGGGAATGGCAATCTGAAAGAGAATAATGATGAGCAT 1241
Query 1224 AGTGATCATGA----GA-AA-GAAGAAGGAGAAGCTGACCATTCTGTTGGGTTTTGGAAT 1277
||||||||||| || || |||||||||||||||||||| |||||||||||||||| |
Sbjct 1242 AGTGATCATGAACATGAGAAAGAAGAAGGAGAAGCTGACCAATCTGTTGGGTTTTGGAGT 1301
Query 1278 GGCATGCTAAGTGCTGGTGCTTCTGCCGCTGCGTCTGGTGGTGGATCATGGCAATAATTA 1337
|||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||||||
Sbjct 1302 GGCATGTTAAGTGCTGGTGCTTCTGCTGCTGCATCTGGTGGT---TCATGGCAATAATTT 1358
Query 1338 TAGTCATGGACCC-A----A-GAGAGCTTTTTAGAAGAAAAGATTAAATTTTTCATCCAA 1391
||||||||||||| | | ||||| ||||||||||||| ||||| |||||||| |||
Sbjct 1359 TAGTCATGGACCCCATCCCATGAGAG-TTTTTAGAAGAAATGATTACATTTTTCACCCAT 1417
Query 1392 ATTTTAAGAAGATGAGAGGGTTAACTATATAATCTGTGTGTTTACTATTTTAGTTCTTTT 1451
|||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1418 GTTTTAAAAAGATGAGAGGGTTAACTATATAATCTGGGTGCTTACTATTTTAGTCCTTTT 1477
Query 1452 CCTTTGGTTTCCT-C-C-TTTTCTAAGAAATTAGTATTATTAACTTTGTTGGGGTTGGGG 1508
||||||||||||| | | |||||||| |||||| | | ||||||||||||||| ||||||
Sbjct 1478 CCTTTGGTTTCCTTCTCCTTTTCTAA-AAATTA-T-T-ATTAACTTTGTTGGG-TTGGGG 1532
Query 1509 TTGGGGATGGATACTGTATGTATTTAGACTCTCTTTTAAATCAATCTCAGTTGTTCGTTA 1568
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1533 ------ATGGATACTGTATGTATTTAGACTCTCTTTTAAATCAATCTCAGTTGTTAGTTA 1586
Query 1569 CCT 1571
|||
Sbjct 1587 CCT 1589
> AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:26727989-26728666 REVERSE LENGTH=678
Length=678
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 465 AACACCAAGTTCTGTTACTACAACAACTACA 495
|||||||||||||||||||||||||||||||
Sbjct 121 AACACCAAGTTCTGTTACTACAACAACTACA 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77559842025
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5