BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474884
Length=2284
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64610.1 | Symbols: | Transducin/WD40 repeat-like superfami... 3025 0.0
AT5G42010.1 | Symbols: | Transducin/WD40 repeat-like superfami... 99.0 2e-19
> AT1G64610.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:23998736-24001950 REVERSE LENGTH=2428
Length=2428
Score = 3025 bits (1638), Expect = 0.0
Identities = 1980/2141 (92%), Gaps = 39/2141 (2%)
Strand=Plus/Plus
Query 138 CtttttttAAGAAAGATCACGGACGGACTTGATTCAACAACAATTGGGTTTGATGAGACT 197
|||||||| |||||||||||| ||||||| |||||| |||| |||| ||||| |||||||
Sbjct 231 CTTTTTTT-AGAAAGATCACGCACGGACTCGATTCATCAACTATTGTGTTTGGTGAGACT 289
Query 198 CAGAGTGTGTGATGGGTACTCGTGGGGATGAAGAAGATGAAGATCGCTTCTTTGATGCCT 257
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 290 GAGAGTGTGTGATGGGTACTCCTGGTGATGAAGAAGATGAAGATCGCTTCTTTGATGCCC 349
Query 258 CTGAA---GACTCCAACGACTTTGGTTTACATCTCTGGACCAATACTCCGGATAGTGTTT 314
||||| | ||| ||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 350 CTGAAGTTGTTTCCGACGACTTTGGTTTACATCTCTGGACCAGTACTCCGGAGAGTGTTT 409
Query 315 CCAGTCGACGGCGTAAGTTTTTACAATCTATGGGCTTTAGTTTCAAACAGACTGCAACAG 374
||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 410 CCACTCGACGGCGTAAGTTTTTACAATCTATGGGCTTGAGTTTCAAAAAGACTGC--CAC 467
Query 375 ATGATGATGATTCTGAGGATGACGACCTTGAACCATCCCATTCTGATTCTAACCTTGTGT 434
| |||||||| ||||| ||||| | ||||||||||||||| |||| |||||| ||||||
Sbjct 468 A-GATGATGACTCTGAAGATGA-G--CTTGAACCATCCCATACTGACTCTAACGTTGTGT 523
Query 435 CTCAAGTTGTTAACCTCTCTTCTGCTGT------G---GATTTGTTGGTGAGGAATGAAT 485
|| ||||||||||| ||||||||| ||| | ||||||||||||||||||||||
Sbjct 524 CTGAAGTTGTTAACGTCTCTTCTGGTGTGAAAGAGATTGATTTGTTGGTGAGGAATGAAT 583
Query 486 CCACTACGTCCTCTGGATTTGATACATCCTCTG---C-TGAGGAGGATACAGATGATCAG 541
| ||||||||||||||||| ||| |||||||| | | | | |||||||||||||||
Sbjct 584 CTACTACGTCCTCTGGATTCGATGTATCCTCTGTTTCATCATCA-GATACAGATGATCAG 642
Query 542 ACCTTGTTGTCCAGGAATCATTCCACTAGTAGCACTTGTACTATGCCTCAAGGATTGAGT 601
|| |||||| | |||||| || ||| |||||||||| ||||||||||| ||||||||||
Sbjct 643 ACTTTGTTGGCTAGGAATGATGCCAGTAGTAGCACTAGTACTATGCCTGGAGGATTGAGT 702
Query 602 GAATCCAGTTCTAGTAAATCGGGTAGCTTTGGCGATTTTCACAACTCTCCATCGAGTCAA 661
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 703 GAATCCAGTTCTAGTAAATCGGGTAGCTTTGGTGATTTTCACAACTCTCCATTTAGTCAA 762
Query 662 AGAGATGATTTGCTCAACAAAGGGGCTAAATCTTGGTTAAAGAAGCTTGGTGTTTTGACA 721
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AGAGATGATTTGCTCAAGAAAGGGGCTAAATCTTGGTTAAAGAAGCTTGGTGTTTTGACA 822
Query 722 CATGTTTTTGAGTCTATGGACTGTCAATCAGTGAGATCAC-CA-TTGCATCAAGTTGCGC 779
|||||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||
Sbjct 823 CATGTTCTTGAGTCTATGGACTGTGAATCAGTGAGA--ACGCAGTTGCATCAAGTTGCGC 880
Query 780 GAGTGCAGACACACAAAAAGCACTTCAAGGAGCTTTCATCTATGTGTATTGACCAAGAAT 839
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |
Sbjct 881 GAGTGCAGACACACAAAAAGCAGTTTAAGGAGCTTTCCTCTATGTGTATTGACCAAGAGT 940
Query 840 TTTCAGCGCATGATGGCTCCATCTTAGCCATGAAGTTTTCTCCTGATGGGAAATACATTG 899
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 941 TTTCAGCGCATGATGGCTCCATCTTAGCAATGAAGTTTTCTCCTGATGGGAAATACATTG 1000
Query 900 CAAGCGCTGGTGAAGACGGTGTTGTTCGAGTTTGGAGCATAACCGAGGAAGAGAGAACAG 959
|||||||||| |||||| ||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1001 CAAGCGCTGGGGAAGACTGTGTTGTACGAGTTTGGAGTATCACCGAGGAAGAGAGAACAG 1060
Query 960 ACAAGTACGAAGTAGCTGAGGTTGATTCTGGTGTTTACTTTGGGATGAATCAACACTCTC 1019
||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1061 ACACGTATGAAGTAGCTGAGGTTGATTCTGGTGTTTACTTTGGGATGAATCAACGTTCTC 1120
Query 1020 AGATTGAGCCCCTGAAGATCAACAATGAGAAAACGGAAAAGAAGACAAGTTTTTTGAGGA 1079
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1121 AGATTGAGCCCCTGAAGATCAACAATGAGAAAACTGAAAAGAAGTCAAGTTTTTTAAGGA 1180
Query 1080 AGGCATCGGACTCAACTTGTGTAGTGTTACCTCCTACCATCTTCAGTATATTGGAGAAGC 1139
|| |||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 1181 AGTCATCAGACTCAACTTGTGTTGTATTACCTCCTACCATCTTCAGTATATCGGAGAAGC 1240
Query 1140 CTCTGCATGAGTTCAGAGGACATATAGGTGAGATCTTGGATCTTTCCTGGTCGGAGAAAG 1199
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CTCTGCATGAGTTCAAAGGACATATAGGTGAGATCTTGGATCTTTCCTGGTCGGAGAAAG 1300
Query 1200 GGTATCTCTTGTCATCTTCTGTCGACGAGACTGTTCGTTTATGGAGAGTAGGTTGTGATG 1259
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1301 GGTATCTCTTGTCATCTTCTGTTGACGAGACTGTTCGTTTATGGAGAGTAGGTTGTGATG 1360
Query 1260 AATGTCTCAGAACTTTCACTCATAACAATTTCGTGACTTGTGTGGCATTTAACCCTGTGG 1319
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 AATGTCTTAGAACTTTCACTCATAACAATTTCGTGACTTGTGTGGCATTTAACCCTGTGG 1420
Query 1320 ATGATAATTATTTTATAAGTGGATCGATTGATGGGAAAGTTCGAATATGGGATGTGACTC 1379
| ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1421 ACGATAATTATTTCATAAGCGGATCCATCGATGGGAAAGTTCGAATATGGGATGTGACTC 1480
Query 1380 GTTGCCGGGTTGTTGACTACACAGACATAAGAGATATTGTAACTGCTGTGTGCTATCGTC 1439
|||| ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||
Sbjct 1481 GTTGTCGGGTGGTTGACTACACAGATATAAGAGACATTGTAACAGCTGTGTGCTATCGTC 1540
Query 1440 CAGATGCAAAGGGTGCAGTAATAGGTTCCATGACAGGGAACTGCCGCTTCTACCATAT-T 1498
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1541 CAGATGCAAAGGGTGCAGTAATAGGTTCTATGACAGGGAACTGCCGCTTCTACCATATAT 1600
Query 1499 TTCGATAATCTGCTGCAAATGGACCAAGAGATCAACGTCCATGGGAAGAAGAAGGTTACA 1558
|| || |||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1601 TT-GAGAATCAGCTGCAAATGGACCAAGAGATCAACGTTCATGGGAAGAAGAAGGTTGCA 1659
Query 1559 AGCAAAAGGATAAGTGGTCTTCAATTTCTTCCCAGTGACAGTGACTCGTACAAAGTAATG 1618
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 1660 AGCAAAAGGATAAGTGGTCTGCAATATCTTCCCAGTGACAGTGACTCGGACAAAGTAATG 1719
Query 1619 GTTACTTCTGCCGATTCACAGATACGCATCTTATGCGGAGATGATGTCATCTGCAAGCTT 1678
|| |||||||| ||||||||||| |||||| |||||||||| || ||||||||||||||
Sbjct 1720 GTGACTTCTGCTGATTCACAGATCCGCATCATATGCGGAGAAGACGTCATCTGCAAGCTG 1779
Query 1679 AAAGCTTCTAGCCTTCGCACAACAGCTGCTTCATTCATTTCAGACGGTAAACACATCATC 1738
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1780 AAAGCTTCTAGCCTTCGCACAACATCTGCTTCATTCATTTCAGATGGTAAACACATCATC 1839
Query 1739 TCAACATCAGAGGATTCATCCATTAATGTCTGGAGCTACTCTCAATTACCCAGCAAGAAG 1798
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1840 TCAACATCAGAGGATTCATACATTAATGTCTGGAGCTACTCTCAATTACCCAGCAAGAAG 1899
Query 1799 CCGTATTCAGAAACACCGAAAAGCATCCGGTCTTACGAGGGCTTTATCTCGCACAATGCA 1858
|||||||| ||||||||||||||||| || ||||||||||| ||| ||||||||||||||
Sbjct 1900 CCGTATTCTGAAACACCGAAAAGCATTCGATCTTACGAGGGATTTCTCTCGCACAATGCA 1959
Query 1859 TCTGTGGCTATTCCTTGGCTCAGACAAGGAAGTAGGGATGGTCTGTCCGAGTGTATCACA 1918
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1960 TCTGTGGCTATTCCTTGGCTCAGACAAGGAAGGAGGGATGGTCTGTCCGAGTGTATCACA 2019
Query 1919 GATTTGGACA-GAAAGATACCAAAAGTGGACTGTTTCTCTCCAATGAAAGGATCAACAAC 1977
|||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2020 GATTTGGACATGAA-GATACCGAAAGTGGACTGTTTCTCTCCAATGAAAGGATCAACAAC 2078
Query 1978 GTGGCCTGAAGAGAAGCTGGAAGATGTTGTAATGAGCAACAGAGGGAAGCTTAAGCTTTT 2037
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2079 GTGGCCTGAAGAGAAGCTGGAAGATGTTGCAATGAGCAACAGAGGGAAGCTGAAGCTTTT 2138
Query 2038 GAGAAGTGCATGGCAGCCTCACCTGTGGGGGCTTGTGATTGTGACAGCGACTTGGGATGG 2097
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2139 GAGGAGCGCATGGCAGCCTCACCTGTGGGGGCTAGTGATTGTGACAGCGACTTGGGATGG 2198
Query 2098 AAGGATTAGAGTATTCCACAACTATGGTTTGCCTGTTCGGGTCTAAAAGGCATAGACAAG 2157
|||||| |||||||||||||||||||||||||| ||||||| |||||| |||| |||||
Sbjct 2199 AAGGATCAGAGTATTCCACAACTATGGTTTGCCAATTCGGGTTTAAAAGACATACACAAG 2258
Query 2158 TTATTA---GATAGGATTCTTTTATTTGTT-ACTTAG-GAGTAATATATGTATACACATT 2212
|||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||
Sbjct 2259 TTATTATTAGATAGGATTCTTTTATTTGTTTACTTAGAGAGTAACATATGTATACACATT 2318
Query 2213 ACACAGATAT-TGAAAAGATGTCTTGTGCACTGTTAGTTGG 2252
|||||||||| | |||||||||||||||||||||| |||||
Sbjct 2319 ACACAGATATCT-AAAAGATGTCTTGTGCACTGTTTGTTGG 2358
Score = 148 bits (80), Expect = 2e-34
Identities = 104/115 (90%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 28 CTCTCTAAAACCCTTTCAAAG-ATTGAAACTTTTCAAAAGGGTTTCAATTGAAAG-AGTG 85
|||||| |||||||||||||| | | |||| | | ||||||||||||||||||| ||||
Sbjct 94 CTCTCTTAAACCCTTTCAAAGAACT-AAACGCTACCAAAGGGTTTCAATTGAAAGAAGTG 152
Query 86 CCTATCCAACCGACACATACTTTCATACCCGTTCGTTCGGTTTTTAATAACCCtt 140
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 153 CCAATCCAACCGACAGATACTTTCATACCCGTTCGTTCGGTTTTTAATAACCCTT 207
> AT5G42010.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:16802280-16805013 FORWARD LENGTH=2386
Length=2386
Score = 99.0 bits (53), Expect = 2e-19
Identities = 79/92 (86%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 2053 GCCTCACCTGTGGGGGCTTGTGATTGTGACAGCGACTTGGGATGGAAGGATTAGAGTATT 2112
|||||||||||||||||||||||||||||| || || ||||| || || || ||||||||
Sbjct 2040 GCCTCACCTGTGGGGGCTTGTGATTGTGACTGCAACGTGGGACGGTAGTATCAGAGTATT 2099
Query 2113 CCACAACTATGGTTTGCCTGTTCGGGTCTAAA 2144
||| ||||| ||||| || |||| |||||||
Sbjct 2100 CCATAACTACGGTTTACCAATTCGAGTCTAAA 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113352830610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5