BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474888

Length=151
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64585.1 | Symbols: RTFL22, DVL12 | ROTUNDIFOLIA like 22 | c...   231    1e-60


> AT1G64585.1 | Symbols: RTFL22, DVL12 | ROTUNDIFOLIA like 22 | 
chr1:23989933-23990097 REVERSE LENGTH=165
Length=165

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 145/154 (94%), Gaps = 3/154 (2%)
 Strand=Plus/Plus

Query  1    AAGTTGATGGGGTCAAACAAGGATTTGCATAAGCAAGTGAAG---AACATCAACAAGCTG  57
            ||||||||||||||||||||||||||||||| ||||| ||||   |||| ||||||||||
Sbjct  10   AAGTTGATGGGGTCAAACAAGGATTTGCATAGGCAAGCGAAGAACAACAACAACAAGCTG  69

Query  58   ACTCCAAATCGGTCCTTGAAGGAGACGAGATCGAGACTATACATAATTAGGCGATGCCTG  117
            |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| 
Sbjct  70   ACTCCAAATCGGTCCTTGAAGGAGACGAGATCGAGATTATACATAATAAGGCGATGCCTC  129

Query  118  GTCATGCTGCTCTGTTGGAGAGAGCCTCGTGATT  151
            ||||||||||||||||||||||||||||||||||
Sbjct  130  GTCATGCTGCTCTGTTGGAGAGAGCCTCGTGATT  163



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6438572928


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5