BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474889
Length=3182
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2338 0.0
AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1940 0.0
AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 230 9e-59
AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 224 4e-57
AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 213 9e-54
AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 171 5e-41
AT1G62900.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 73.1 2e-11
> AT1G64580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23984790-23986731 REVERSE LENGTH=1942
Length=1942
Score = 2338 bits (1266), Expect = 0.0
Identities = 1483/1584 (94%), Gaps = 29/1584 (2%)
Strand=Plus/Plus
Query 1609 GATTAATTCCGATAGCGTCTTCGTCATCGGTGAAGGGGTTTGTTCGTCGGCATT-TGCTT 1667
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 90 GATTAATTCCGATAGCGTTTTCGTCATCGGTGAAGGGGTTTGTTCGTCGGCATTAT-CTT 148
Query 1668 CTTCTGGAGAGAGGTAACAATCCCGAGTCTCGATCTTTTTCCGGTGCGAGtcatcatcat 1727
||||||||||||||||||||||||||| || ||| | | | | ||| || | | |
Sbjct 149 CTTCTGGAGAGAGGTAACAATCCCGAGACT---TCTCTCT-C--T-CGA-TC-T--TTTT 197
Query 1728 catc-at-c-a-tcatcatcatcatTACCGAGAGAGATTGAGAAGTGAGCTTCACTGTAT 1783
| | | | | |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 198 C--CGGTGCGAGTCATCATCATCATTACAGAGAGAGATTGAGAAATGAGCTTCACTGTAT 255
Query 1784 AAAGTTTGATGATGCATTTGGTTTGTTCTGTGAGATGCTTCAGTCTCGTCCCATTCCTAG 1843
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AAAGTTTGACGATGCATTTAGTTTGTTCTGTGAGATGCTTCAGTCTCGTCCCATTCCTAG 315
Query 1844 CATTGTTGATTTCACTCGAGTTTTGAGTGCCATTGCTAAGATGAACAAGTTTGACATTGT 1903
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 316 CATTGTTGATTTCACTAGAGTTTTGACTGTCATTGCTAAGATGAACAAGTTTGACATTGT 375
Query 1904 CATCTATCTCTTCCACAAGATGGAGAATTTGGGCATCTCACACGATCTTTATAGCTTCAC 1963
||||||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||
Sbjct 376 CATCTATCTCTACCACAAGATGGAGAATTTGGGAATCTCACATGATCTCTATAGCTTCAC 435
Query 1964 CATTTTGATTCATTGTTTCTGCCGATGCTCTCGATTCTCTCTTGCTCTTGCTCTTCTTGG 2023
|||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 436 CATTCTGATTCATTGTTTCTGCCGATGCTCACGACTCTCTCTTGCTCTTGCTCTTCTTGG 495
Query 2024 AAAGATGATGAAACTTGGGTTTCAG-CCCAGCATCGTCACGCTTGGCTCTCTCCTCAACG 2082
||| ||||||||||||||||||| | |||||||| ||||| |||||||||||||||||||
Sbjct 496 AAAAATGATGAAACTTGGGTTTC-GTCCCAGCATTGTCACTCTTGGCTCTCTCCTCAACG 554
Query 2083 GTTTCTGTCAAGGGAATAGATTTCAGGAGGCTGTTTCTCTTGTCGATTCAATGG-CGGAA 2141
|||||||||||||||||||||||||||||||||||||||| || |||||||||| || |
Sbjct 555 GTTTCTGTCAAGGGAATAGATTTCAGGAGGCTGTTTCTCTCGTTGATTCAATGGATGG-A 613
Query 2142 TTGGGATTGGAACCTAATGTTGTCATCTACAACACTGTCATTAATGGTCTTTGCAAGAAC 2201
|| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 614 TTCGGATTCGTTCCTAATGTTGTCATCTACAACACTGTCATTAACGGTCTTTGCAAGAAC 673
Query 2202 AGAGATTTGAATAACGCCCTCGAGATTTTTTA-TGGGATGGAGAAGAAAGGAATC-GTAG 2259
||||||||||||||||| |||||| |||| || | | |||||||||||||||||| | ||
Sbjct 674 AGAGATTTGAATAACGCACTCGAGGTTTTCTACT-GTATGGAGAAGAAAGGAATCAG-AG 731
Query 2260 CGGATGCTGTTACTTACAACACTCTTATAAGTGGCCTTTGTAACTCTGGTAGATGGACCG 2319
| ||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 732 CTGATGCTGTTACTTACAACACTCTCATAAGTGGTCTTTCTAACTCTGGTAGATGGACCG 791
Query 2320 ACGCAGCTCGACTTCTCAGAGATATGGTGAAGAGGAAAATCGATCCTAATGTGATATTTT 2379
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 ACGCTGCTCGACTTCTCAGAGATATGGTGAAGAGGAAAATCGATCCTAATGTGATATTTT 851
Query 2380 TCACTGCGCTGATCGATACTTTTGTGAAAGAGGGCAACCTTTTAGAGGCTGA-AAACTTG 2438
||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||||||
Sbjct 852 TCACTGCGCTGATCGATACGTTTGTGAAAGAGGGTAACCTTTTAGAGGCT-AGAAACTTG 910
Query 2439 TACAAGGAGATGATCAGAAGATCTGTACATCCTAATATTCTCACTTACAATTCACTCATC 2498
||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 911 TACAAGGAGATGATCCGAAGATCTGTAGTTCCTAATGTTTTCACTTACAATTCACTCATC 970
Query 2499 AATGGGTTTTGCATTCAAGGTCGCTTAGGTGACGCCAAACATATGTTTGATCTGATGGTA 2558
||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 971 AATGGGTTTTGCATTCATGGTTGCTTAGGTGATGCCAAATATATGTTTGATCTGATGGTA 1030
Query 2559 AGCAAGGGTTGCTTCCCGGATGTTGTGACCTATAACACTCTCATAACAGGATTTTGTAAG 2618
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 AGCAAGGGTTGCTTCCCTGATGTTGTGACCTATAACACTCTCATAACAGGATTTTGTAAG 1090
Query 2619 TCTAAGAGGGTAGAAGATGGTATGAAACTCTTTTGTGAGATGACTCATCAAGGATTGGTT 2678
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1091 TCTAAGAGGGTAGAAGATGGGATGAAACTCTTTTGTGAGATGACTTATCAAGGATTGGTT 1150
Query 2679 GGCGATGCATTCACTTACAACACGCTTATCCACGGTTATTGTCAAGCGGGCAAACTTAAT 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 GGCGATGCATTCACTTACAACACGCTTATCCACGGTTATTGTCAAGCGGGCAAACTTAAT 1210
Query 2739 GTTGCCCAAAAGGTTTTCAATCGGATGGTTGATTGTGGTGTGCCTCCTGATATTGTTACC 2798
||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1211 GTTGCACAAAAGGTTTTCAATAGGATGGTTGATTGTGGTGTGTCTCCTGATATTGTTACC 1270
Query 2799 TACAACATCTTGTTAGATTGTCTATGTAATAACGGGAAGATAGAGAAAGCATTGGTGATG 2858
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1271 TACAACATCTTGTTAGATTGTCTATGTAATAACGGGAAGATAGAGAAAGCATTAGTGATG 1330
Query 2859 GTAGAGGATCTGCAGAAGAATCAAATGGATGTTGATATTATTACATATAATATCATCATT 2918
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1331 GTAGAGGATCTGCAAAAGAGTGAAATGGATGTTGATATTATTACATATAATATCATCATT 1390
Query 2919 CAAGGGATGTGTAGAAATGATAAGGTGAAAGAGGCTTGGTGTTTATTTCGTAGCCTCACT 2978
|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1391 CAAGGGTTGTGTAGAACTGATAAGTTGAAAGAGGCTTGGTGTTTATTTCGTAGCCTCACT 1450
Query 2979 CGCAAAGGAGTGAAGCTTGATGCTATAGCATACATTACAATGATATCGGGCTTGTGTAGG 3038
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1451 CGCAAAGGAGTGAAGCCTGATGCTATAGCATACATTACAATGATATCAGGCTTGTGCAGG 1510
Query 3039 AATGGCCTACGGCGTGAAGCGGACAAGCTGTGTAGAAGAATGAAAGAAGATGGGTTTATG 3098
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 AAAGGCCTACAGCGTGAAGCGGACAAGCTGTGTAGAAGAATGAAAGAAGATGGGTTTATG 1570
Query 3099 CCAAGTGAACGCATATATGATGAGACGCTTAGAGATCACTACACAAGCTTATCAGCTGAA 3158
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1571 CCAAGTGAACGCATATATGATGAGACACTTAGAGATCACTACACAAGCTTATCAGCTGAA 1630
Query 3159 CTCATCAAAGCAGTTCATGAGTAA 3182
||||||||||||| ||||||||||
Sbjct 1631 CTCATCAAAGCAGCTCATGAGTAA 1654
> AT1G64583.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23987051-23988740 REVERSE LENGTH=1690
Length=1690
Score = 1940 bits (1050), Expect = 0.0
Identities = 1354/1498 (90%), Gaps = 31/1498 (2%)
Strand=Plus/Plus
Query 20 GACGGCGAAGGGATTTCTGAAGAAAGCT-GCTT-ACCCTAACC--CT-GGAGGAGGAGCT 74
||||||||||||||||| | || || | | || ||||||||| | ||||||||||||
Sbjct 36 GACGGCGAAGGGATTTC-G--GAGAG-TAG-TTAACCCTAACCTTTTAGGAGGAGGAGCT 90
Query 75 GCTGCTCGAGCTTTTTCTGGTTACCGAGAGAAACTGAGAACTGGGTTTCTTCACTCTATC 134
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 91 GCTGCTAGAGCTTTTTCTGATTACCGAGAGAAACTGAGAACAGGGTTTCTTCACTCTATC 150
Query 135 AGGTTCGAAGATGCGCTTGATTTGTTCTTGGAGATGGTTCAGTCTCAACCCTTACCTTCC 194
||||| ||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||||
Sbjct 151 AGGTTTGAAGATGCGTTTGCTTTGTTCTTTGAGATGGTTCATTCTCAACCCTTACCTTCC 210
Query 195 ATTGTTGATTTCACTAGATTACTTACTGCGATTGCCAATTTGAGAAGATATGAGACTGTT 254
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 211 ATTGTTGATTTCACTAGATTACTTACTGCCACTGCCAATTTGAGAAGATATGAGACTGTT 270
Query 255 ATCTATTTCTCCCAGCAGATGGAACTCTTTGGAATTTCACACGATCTCTATAGTTTCACC 314
||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 271 ATCTATTTCTCCCAGAAGATGGAACTCTATGGAATCTCACACGATCTCTATAGTTTCACC 330
Query 315 ATTTTGATTCATTGTTTCTGCCGATGCTCTCGTCTCT-CTCTTGCTTTATCTATTCTTGG 373
||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||
Sbjct 331 ATTTTGATTCATTGTTTCTGCCGATGCTCTCGTCTCTCCT-TTGCTCTATCTGTTCTTGG 389
Query 374 GAAGATGATGAAACTTGGTTATGAGCCCAGCATTGTCACTTTTGGCTCTCTGCTCCATGG 433
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 390 AAAAATGATGAAACTTGGTTATGAGCCCAGCATTGTCACCTTTGGCTCTCTGCTCCATGG 449
Query 434 ATTCTGTCTCCG-CAATAGAATTCACGACGCCTTCTCTCTCGTTGCTTCAATGGTGAAAT 492
||||||||| || ||||||||| |||||||||||| | || || |||||| ||||
Sbjct 450 ATTCTGTCT-CGTGAATAGAATTGGTGACGCCTTCTCTTTAGTCATTTTAATGGTTAAAT 508
Query 493 CGGGATATGAGCCTAATGTTGTTGTCTACAACACTCTAATTGATTGCCTCTGCAAGAACG 552
|||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||||
Sbjct 509 CGGGATATGAGCCTAATGTTGTAGTCTACAACACTCTTATTGACGGTCTCTGCAAGAACG 568
Query 553 GTGATGTGAATATTGCCTTGGAGCTTCTCAACGAGATGGAGAAGAAAGGACGACTCGCAG 612
|||| |||||||||| |||||||||||||||||||||||||||||| | | |||| ||
Sbjct 569 GTGAACTGAATATTGCGTTGGAGCTTCTCAACGAGATGGAGAAGAAA-G--GTCTCGGAG 625
Query 613 CCGATCTTGTTACCTACAACACTCTCTTGACAGGCCTTTGTTATTCTGGT-GAATGGCGC 671
||||| ||||||| |||||||||||||| ||||| ||||||||||||||| | |||| ||
Sbjct 626 CCGATGTTGTTACATACAACACTCTCTTAACAGGTCTTTGTTATTCTGGTCG-ATGGAGC 684
Query 672 CAAGCTGCTCGAATACTGAGAGATATGACGAAGAGGAGAATAAACCCTGATGTTTTCACT 731
| || |||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||
Sbjct 685 GACGCAGCTCGAATGCTGAGAGATATGATGAAGAGGAGTATAAACCCTGATGTTGTCACT 744
Query 732 TTCACCGCATTGATCGATGCT-TTTGTGAAACAAGGCAATCTTGACGAGGCTCAAGAATT 790
||||| || |||||||||| | ||||||||||||||||||||||| ||||||||||||||
Sbjct 745 TTCACTGCGTTGATCGATG-TATTTGTGAAACAAGGCAATCTTGATGAGGCTCAAGAATT 803
Query 791 GTACAAGCAGATGCTCCAAAGCTCTATCGGTCCTAATACTGTCACTTACAATTCACTTAT 850
||||||| ||||| ||||||||||| | | |||||||| ||||||||| |||||| | ||
Sbjct 804 GTACAAGGAGATGATCCAAAGCTCTGTTGATCCTAATAATGTCACTTATAATTCAATCAT 863
Query 851 CAACGGGCTTTGCATGCACGGTCGTTTATATCACGCCAAGAAAACATTTGATTTGATGGC 910
|| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 864 TAATGGGCTGTGCATGCACGGTCGTCTATATGACGCCAAGAAAACATTTGATTTGATGGC 923
Query 911 AAGCAAGGGTTGCTTCCCAAACGTGGTGACATATAACACGCTCATAAATGGATTCTGTAA 970
|||||||||||||||||| || ||||||||||||||||| ||||| | ||||||||||||
Sbjct 924 AAGCAAGGGTTGCTTCCCTAATGTGGTGACATATAACACTCTCATTAGTGGATTCTGTAA 983
Query 971 GTCTAGGAGGGTAGAAGACGGGATGAAACTCTTCCAAAGGATGTATCGTGAAGGATTGGT 1030
|| ||||| |||||| || ||||||||||||||||||||||||| | ||||||||||
Sbjct 984 GTTTAGGATGGTAGATGAAGGGATGAAACTCTTCCAAAGGATGTCTTGTGAAGGATTCAA 1043
Query 1031 TGGCGACACATTCACTTACAACACTCTTATCCACGGTTATTGTCAGGTGGGTAAACTTAG 1090
|| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TGCCGACATATTTACTTACAACACTCTTATCCACGGTTATTGTCAGGTGGGTAAACTTAG 1103
Query 1091 AGTTGCCAAAGACATCTTCAGCTGGATGGTTTCTTGTGGCGTGACTCCTGATATCATAAC 1150
||||||| |||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 1104 AGTTGCCCTAGACATCTTCTGCTGGATGGTTTCTCGTCGCGTGACTCCTGATATCATAAC 1163
Query 1151 CCACTGCATTCTGTTACATGGTCTTTGTGTTAATGGGGAGATTGGAAGCGCAATGGTGAA 1210
|||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 1164 CCACTGCATTCTGTTACATGGTCTTTGTGTTAATGGGGAGATCGAAAGCGCACTGGTGAA 1223
Query 1211 ATTCAATGATATGAGA-AGTGGTGAAAAGTATCTTGGCATTGTTGCATATAACATTATGA 1269
|||| ||||||||||| | | ||||||||| |||||||||||||||||||||| ||||
Sbjct 1224 ATTCGATGATATGAGAGAAAGC-GAAAAGTATATTGGCATTGTTGCATATAACATCATGA 1282
Query 1270 TTCACGGGTTGTGCAAGGCGGATGAAGTGGAAGAAGCTTGGGAGTTATTTTGTAGACTCC 1329
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1283 TTCACGGGTTGTGCAAGGCGGATAAAGTGGAAAAAGCTTGGGAGTTATTTTGTAGACTCC 1342
Query 1330 CTGTCGAAGGAGTGAAGCCAGATGCTAGAACATACACTATAATGATACTAGGTTTATGTA 1389
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 CTGTCGAAGGAGTGAAGCCTGATGCTAGAACATACACTATAATGATACTAGGTTTATGTA 1402
Query 1390 AGAATGGGCC-ACGGCGTGAAGCGGATGAGCTGTTTAGAAGAATGAAAGAGGATGGGATC 1448
|||||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1403 AGAATGGGCCTA-GGCGTGAAGCGGATGAGCTGATTAGAAGAATGAAAGAGGAGGGGATC 1461
Query 1449 ATATGCCAA--GCA-G---AAGATGGCCATCTAGGAGAGCATGGAACAAGTAATAAGG 1500
||||| ||| | | | |||||| |||||||| ||||||| | ||||||||||||
Sbjct 1462 ATATGTCAAATGAATGCGGAAGATGACCATCTAGAAGAGCATAGCTCAAGTAATAAGG 1519
Score = 745 bits (403), Expect = 0.0
Identities = 1087/1407 (77%), Gaps = 87/1407 (6%)
Strand=Plus/Plus
Query 1747 atTACCGAGAGAGATTGAG-A-AGTG-AGCTTCACTGTATAAAGTTTGATGATGCATTTG 1803
|||||||||||| | |||| | || | ||||||| ||| | |||||| ||||| ||||
Sbjct 110 ATTACCGAGAGAAACTGAGAACAGGGTTTCTTCACTCTATCAGGTTTGAAGATGCGTTTG 169
Query 1804 GTTTGTTCTGTGAGATGCTTCAGTCTCGTCCCATT-CCTAGCATTGTTGATTTCACTCGA 1862
|||||||| ||||||| |||| |||| ||| || ||| |||||||||||||||| ||
Sbjct 170 CTTTGTTCTTTGAGATGGTTCATTCTCAACCC-TTACCTTCCATTGTTGATTTCACTAGA 228
Query 1863 GTT--TTGAGTGCCATTGCTAAGATGAACAAG-TTTGACATTGTCATCTATCTCTTCCAC 1919
|| || | ||||| ||| || || | ||| | ||| | ||| |||||| ||| |||
Sbjct 229 -TTACTT-ACTGCCACTGCCAATTTG-AGAAGATATGAGACTGTTATCTATTTCTCCCAG 285
Query 1920 AAGATGGAGAAT-T-TGGGCATCTCACACGATCTTTATAGCTTCACCATTTTGATTCATT 1977
|||||||| | | | | || |||||||||||||| ||||| |||||||||||||||||||
Sbjct 286 AAGATGGA-ACTCTAT-GGAATCTCACACGATCTCTATAGTTTCACCATTTTGATTCATT 343
Query 1978 GTTTCTGCCGATGCTCTCGATTCTCTC-TT-GCTCT-TGCTCTTCTTGGAAAGATGATGA 2034
||||||||||||||||||| | ||||| || ||||| | || |||||||||| |||||||
Sbjct 344 GTTTCTGCCGATGCTCTCG-T-CTCTCCTTTGCTCTAT-CTGTTCTTGGAAAAATGATGA 400
Query 2035 AACTTGGGTT-TCAGCCCAGCATCGTCACGCTT-GGCTCTCTCCTCAACGGTTTCTGTCA 2092
||||||| || | |||||||||| ||||| ||| |||||||| ||| | || |||||||
Sbjct 401 AACTTGG-TTATGAGCCCAGCATTGTCAC-CTTTGGCTCTCTGCTCCATGGATTCTGTCT 458
Query 2093 AGGGAATAGATTTCAG-GAGGCTGTTTCTCTT--GTCGATTC-AATGGCGGAATTGGGAT 2148
| ||||||| || | || || || ||||| ||| ||| ||||| ||| |||||
Sbjct 459 CGTGAATAGAATTG-GTGACGCC-TT-CTCTTTAGTC-ATTTTAATGGTTAAATCGGGAT 514
Query 2149 -TGGAACCTAATGTTGTCA-TCTACAACACTGTCATTAATGGTCTTTGCAAGAACAGAGA 2206
|| | ||||||||||| | ||||||||||| | ||| | ||||| ||||||||| | ||
Sbjct 515 ATG-AGCCTAATGTTGT-AGTCTACAACACTCTTATTGACGGTCTCTGCAAGAACGGTGA 572
Query 2207 TTTGAATAACGCCCTCGAGATTTTTTATGGGATGGAGAAGAAAGGAATCGTAGCGGATGC 2266
|||||| || | ||| || | | | ||||||||||||||| ||| ||| ||||
Sbjct 573 ACTGAATATTGCGTTGGAGCTTCTCAACGAGATGGAGAAGAAAGGTCTCGGAGCCGATGT 632
Query 2267 TGTTACTTACAACACTCT-TATAAGTGGCCTTTGTAACTCTGGTAGATGGACCGACGCAG 2325
|||||| ||||||||||| | ||| || |||||| | |||||| |||||| ||||||||
Sbjct 633 TGTTACATACAACACTCTCT-TAACAGGTCTTTGTTATTCTGGTCGATGGAGCGACGCAG 691
Query 2326 CTCGACTTCTCAGAGATATGGTGAAGAGGAAAATCGATCCTAATGT-GAT-ATTTTTCAC 2383
||||| | || ||||||||| ||||||||| || | ||| |||| | | | ||| |||
Sbjct 692 CTCGAATGCTGAGAGATATGATGAAGAGGAGTATAAACCCTGATGTTG-TCACTTT-CAC 749
Query 2384 TGCGCTGATCGATACT-TTTGTGAAAGAGGGCAACCTTT-TAGAGGCTGAA-AACTTGTA 2440
|||| |||||||| | ||||||||| | ||||| ||| | |||||| || || |||||
Sbjct 750 TGCGTTGATCGATG-TATTTGTGAAACAAGGCAATCTTGAT-GAGGCTCAAGAA-TTGTA 806
Query 2441 CAAGGAGATGATC-AGAAGATCTGTACATCCTAATATTCTCACTTACAATTCACTCATCA 2499
||||||||||||| | ||| ||||| ||||||||| | ||||||| |||||| |||| |
Sbjct 807 CAAGGAGATGATCCA-AAGCTCTGTTGATCCTAATAATGTCACTTATAATTCAATCATTA 865
Query 2500 ATGGGTTTTGCATTCAAGGTCG-CT-TAGGTGACGCCAA-ACATATGTTTGATCTGATGG 2556
||||| | ||||| || ||||| || || ||||||||| | | | |||||| ||||||
Sbjct 866 ATGGGCTGTGCATGCACGGTCGTCTATA--TGACGCCAAGAAA-ACATTTGATTTGATGG 922
Query 2557 TAAGCAAGGGTTGCTTCCCGGATGTTGTGACCTATAACACTCTCATAACAGGATTTTGTA 2616
|||||||||||||||||| |||| ||||| |||||||||||||| | ||||| ||||
Sbjct 923 CAAGCAAGGGTTGCTTCCCTAATGTGGTGACATATAACACTCTCATTAGTGGATTCTGTA 982
Query 2617 AGTCTAAGAGGGTAGAAGATGGTATGAAACTCTTTTGTGAG-ATGACTCATCAAGGATTG 2675
||| || || |||||| || || ||||||||||| || ||| || | |||||||
Sbjct 983 AGTTTAGGATGGTAGATGAAGGGATGAAACTCTTCCAA-AGGATGTCTTGTGAAGGATTC 1041
Query 2676 GTTGGCGATGCATTCACTTACAACACGCTTATCCACGGTTATTGTCAAGCGGGCAAACTT 2735
|| ||| ||| ||||||||||| |||||||||||||||||||| | ||| ||||||
Sbjct 1042 AATGCCGACATATTTACTTACAACACTCTTATCCACGGTTATTGTCAGGTGGGTAAACTT 1101
Query 2736 A-ATGTTGCCCAAAAGGTTTTCAA-TCGGATGGTTGATTGTGGTGTGCCTCCTGATATTG 2793
| | ||||||| | | | ||| | |||||||| | || | ||| ||||||||||
Sbjct 1102 AGA-GTTGCCCTAGACATCTTCTGCT-GGATGGTTTCTCGTCGCGTGACTCCTGATATCA 1159
Query 2794 TTACCTACAACAT-CTTGTTAGATTGTCTATGTAATAACGGGAAGATAGAGAAA-GCATT 2851
| ||| || ||| || |||| || |||| ||| ||| ||| |||| || || ||| |
Sbjct 1160 TAACCCACTGCATTCT-GTTACATGGTCTTTGTGTTAATGGGGAGATCGA-AAGCGCACT 1217
Query 2852 GGTGATGGTAGAGGATCTGCAGAAGAAT-C-AAATGGATGTTGATATTATTACATATAAT 2909
||||| | || ||| || ||| ||| | ||| | || ||| ||| || |||||||
Sbjct 1218 GGTGAAATTCGATGATATG-AGA-GAAAGCGAAAAGTATATTGGCATTGTTGCATATAAC 1275
Query 2910 ATCATCATTCAAGGGATGTGTAGAAATG-ATAAGGTG-AAAGAGGCTTGGT-GTTTATTT 2966
||||| ||||| ||| |||| | | | |||| ||| ||| || ||||| ||| ||||
Sbjct 1276 ATCATGATTCACGGGTTGTGCA-AGGCGGATAAAGTGGAAAAAG-CTTGGGAGTT-ATTT 1332
Query 2967 CGTAGCCTCACTCG-CAAAGGAGTGAAGCTTGATGCTATAGCATACATTACAATGATA-T 3024
|||| ||| || | | |||||||||||| |||||||| | |||||| || ||||||| |
Sbjct 1333 TGTAGACTCCCT-GTCGAAGGAGTGAAGCCTGATGCTAGAACATACACTATAATGATACT 1391
Query 3025 CGGGCTTGTGTAGGAATGG-CCTACGGCGTGAAGCGGACAAGCTG-TGTAGAAGAATGAA 3082
|| || |||| |||||| |||| ||||||||||||| ||||| | ||||||||||||
Sbjct 1392 AGGT-TTATGTAAGAATGGGCCTA-GGCGTGAAGCGGATGAGCTGAT-TAGAAGAATGAA 1448
Query 3083 AGAAGATGGGTT--TATGCCAAGTGAA 3107
||| || ||| | |||| ||| ||||
Sbjct 1449 AGAGGAGGGGATCATATGTCAAATGAA 1475
> AT1G63070.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23385324-23387167 REVERSE LENGTH=1773
Length=1773
Score = 230 bits (124), Expect = 9e-59
Identities = 298/378 (79%), Gaps = 28/378 (7%)
Strand=Plus/Plus
Query 1785 AAGTTTGATGATGC-ATTTGGTTTGTTCTGTGAGATGCTTC-AGTCTCGTCCCA-TTCC- 1840
||||| |||||||| | ||||||||||| |||| ||| || |||||||| ||| ||||
Sbjct 163 AAGTTAGATGATGCGA-TTGGTTTGTTCGGTGACATG-GTCAAGTCTCGT-CCATTTCCT 219
Query 1841 TAGCATTGTTGATTTCACTCGAGTT-TTGAGTGCCATTGCTAAGATGAACAAGTTTGA-C 1898
| | |||||||| |||| | | || ||||||||||||||||||||||||||||| || |
Sbjct 220 TCG-ATTGTTGAGTTCAGT-AAATTGTTGAGTGCCATTGCTAAGATGAACAAGTTCGATC 277
Query 1899 ATTGTCATCTATCTCTTCCA-CAAGATGGAGAATTTGGGCATCTCACACGATCTTTATAG 1957
||||||||| |||| | | || |||| | |||||||| || ||||| ||||||| |
Sbjct 278 -TTGTCATCTCTCTCGGCGAGCA-GATGCAAAATTTGGGAATTTCACATAATCTTTACA- 334
Query 1958 CTT-CACCATTTTGATTCAT-TGTTTCTGCCGATGCTCTCGATTCTCTCTTGCTCTT-GC 2014
| | || ||||| || || | |||||||||| |||||| | |||| |||||| || ||
Sbjct 335 CATACAGTATTTTCAT-CAACTATTTCTGCCGACGCTCTCAACTCTCACTTGCT-TTAGC 392
Query 2015 TCTTCTTGGAAAGATGATGAAACTTGGGTTTCAGCCCAGCATCGTCACGCTTGG-CTCTC 2073
||||||| ||||||||||||||||| | | ||||||||| || || || | ||| |
Sbjct 393 AATTCTTGGCAAGATGATGAAACTTGGCTATGGGCCCAGCATTGTTACCCT-GAACTCGC 451
Query 2074 TCCTCAACGGTTTCTGTCAAGGGAATAG-ATTTCAGGAGGCTGTTTCTCTTG-TCGATTC 2131
| ||||| ||||||||||| |||||||| || || | |||||||| || ||| | ||| |
Sbjct 452 TTCTCAATGGTTTCTGTCACGGGAATAGGATATCCG-AGGCTGTTGCT-TTGGTTGAT-C 508
Query 2132 A-ATGGCGGAATTGGGAT 2148
| |||| |||| ||||||
Sbjct 509 AGATGGTGGAAATGGGAT 526
> AT1G62914.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23301576-23303162 FORWARD LENGTH=1587
Length=1587
Score = 224 bits (121), Expect = 4e-57
Identities = 262/327 (80%), Gaps = 21/327 (6%)
Strand=Plus/Plus
Query 1791 GATGATGCATTTGGTTTGTTCTGTGAGAT-GCTTCAGTCTCGTCCCATT-CC-TAGCATT 1847
||||||||| ||||||||||| ||| || || ||||||||| || || || | | |||
Sbjct 178 GATGATGCAATTGGTTTGTTCGGTGTTATGGC-ACAGTCTCGT-CCTTTCCCTTCG-ATT 234
Query 1848 GTTGATTTCACTCGAGTTTTGAGTGCCATTGCTAAGATGAACAAGTTTGA-CATTGTCAT 1906
|||| |||| | | | ||||||||||||||||||||||||||||| || | |||||||
Sbjct 235 ATTGAGTTCAGTAAACTGTTGAGTGCCATTGCTAAGATGAACAAGTTCGATC-TTGTCAT 293
Query 1907 CTATCTCTTCC---ACAAGATGGAGAATTTGGGCATCTCACACGATCTTTATAGCTT-CA 1962
|| | |||| | |||||||||| ||| || || ||||| |||| |||| ||| ||
Sbjct 294 CT--C-CTTCGGGGAGAAGATGGAGATTTTAGGAATTTCACATAATCTCTATA-CTTACA 349
Query 1963 CCATTTTGATTCATTGTTTCTGCCGATGCTCTCGATTCTCTCTTGCTCTT-GCTCTTCTT 2021
||||||||| | |||||||| ||||| |||||| ||||||||||| || |||||||||
Sbjct 350 ATATTTTGATTAACTGTTTCTGTCGATGTTCTCGACTCTCTCTTGCT-TTAGCTCTTCTT 408
Query 2022 GGAAAGATGATGAAACTTGGGTTTCAGCCC-AGCATCGTCACGCTTGGCTCTCTCCTCAA 2080
|| |||||||||||||| || | | ||||| | || ||||||||| ||| || |||||
Sbjct 409 GGCAAGATGATGAAACTCGGCTATGAGCCCGAT-ATTGTCACGCTTAACTCGCTGCTCAA 467
Query 2081 CGGTTTCTGTCAAGGGAATAG-ATTTC 2106
||||||||||| |||||||| |||||
Sbjct 468 TGGTTTCTGTCACGGGAATAGGATTTC 494
> AT1G63130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23412730-23415149 FORWARD LENGTH=2420
Length=2420
Score = 213 bits (115), Expect = 9e-54
Identities = 289/370 (78%), Gaps = 24/370 (6%)
Strand=Plus/Plus
Query 1791 GATGATGCATTTGGTTTGTTCTGTGAGATGCTTC-AGTCTCGTCCCATT-CC-TAGCATT 1847
|||||||| || | ||||| |||| ||| || |||||||| || || || | | |||
Sbjct 311 GATGATGCGGTTAATCTGTTCGGTGACATG-GTCAAGTCTCGT-CCTTTCCCTTCG-ATT 367
Query 1848 GTTGATTTCACTCGAGTTTTGAGTGCCATTGCTAAGATGAACAAGTTTGA-CATTGTCAT 1906
||||| |||| | | | ||||||||||||||||||||||||||||| || | |||||||
Sbjct 368 GTTGAGTTCAGTAAACTGTTGAGTGCCATTGCTAAGATGAACAAGTTCGATC-TTGTCAT 426
Query 1907 CTATCTCTTCCA-CAAGATGGAGAATTTGGGCATCTCACACGATCTTTATAGCTT-CACC 1964
|| |||| | | || |||| | |||||||| || ||||| ||||||| | | | ||
Sbjct 427 CTCTCTCGGCGAGCA-GATGCAAAATTTGGGAATTTCACATAATCTTTACA-CATACAGT 484
Query 1965 ATTTTGATTCAT-TGTTTCTGCCGATGCTCTC-GATTCTCTCTTGCTCTT-GCTCTTCTT 2021
||| | || || |||||||||||| |||||| | | |||||||||| || ||| |||||
Sbjct 485 ATTCTCAT-CAACTGTTTCTGCCGACGCTCTCAGCT-CTCTCTTGCT-TTAGCTGTTCTT 541
Query 2022 GGAAAGATGATGAAACTTGGGTTTCAGCCC-AGCATCGTCACGCTTGGCTCTCTCCTCAA 2080
| |||||||||||||| || | | ||||| | || ||||||||| |||||| |||||
Sbjct 542 GCCAAGATGATGAAACTCGGCTATGAGCCCGAT-ATTGTCACGCTTAACTCTCTGCTCAA 600
Query 2081 CGGTTTCTGTCAAGGGAATAG-ATTTCAGGAGGCTGTTTCTCTTGTCGATTCA-ATGGCG 2138
||||||||||| |||||||| ||||||| | || || |||||||| | | || |||| |
Sbjct 601 TGGTTTCTGTCACGGGAATAGGATTTCAG-ATGCCGTATCTCTTGTTGGT-CAGATGGTG 658
Query 2139 GAATTGGGAT 2148
||| ||||||
Sbjct 659 GAAATGGGAT 668
> AT1G62930.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:23306534-23308683 FORWARD LENGTH=2150
Length=2150
Score = 171 bits (92), Expect = 5e-41
Identities = 257/335 (77%), Gaps = 18/335 (5%)
Strand=Plus/Plus
Query 1791 GATGATGCATTTGGTTTGTTCTGTGAGATGCTTCAGTCTCGTCCCATT-CCTAGCATTGT 1849
|||||||| ||| | ||||| |||||||| | ||||||||| || || ||| ||||||
Sbjct 184 GATGATGCGGTTGATCTGTTCGGTGAGATGGTACAGTCTCGT-CCTTTACCTTCCATTGT 242
Query 1850 TGATTTCACTCGAGTTTTGAGTGCCATTGCTAAGATGAACAAGTTTGA-CATTGTCATCT 1908
||| |||| | | | |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 243 TGAATTCAATAAACTGTTGAGTGCCATTGCTAAGATGAACAAGTTTGATC-TTGTCATCT 301
Query 1909 ATCTCTTCCA-CAAGATGGAGAATTTG-GGCATCTCACACGATCTTTATAGCTT-CACCA 1965
|||| | | | |||| | ||| || || || ||| | || || ||| | | || |
Sbjct 302 CTCTCGGCGAGCG-GATGCAAAATCTGAGG-ATTTCATATGACCTCTATT-CGTACAATA 358
Query 1966 TTTTGATTCATTGTTTCTGCCGATGCTCTCGATTCTCTCTTGCTCTT-GCTCTTCTTGGA 2024
|||||||| | ||||| || ||| |||||| | || |||||||| || ||| |||||||
Sbjct 359 TTTTGATTAACTGTTTTTGTCGACGCTCTCAACTCCCTCTTGCT-TTAGCTGTTCTTGGC 417
Query 2025 AAGATGATGAAACTTGGGTTTCAGCCC-AGCATCGTCACGCTTGGCT-CTCTCCTCAACG 2082
|||||||||||||| || | | ||||| | || ||||||||| || | |||||||| |
Sbjct 418 AAGATGATGAAACTCGGCTATGAGCCCGAT-ATTGTCACGCTTT-CTTCGCTCCTCAATG 475
Query 2083 GTTTCTGTCAAGGGAATAG-ATTTCAGGAGGCTGT 2116
| | ||| || || || || || || | |||||||
Sbjct 476 GGTACTGCCACGGTAAGAGGATATCCG-AGGCTGT 509
> AT1G62900.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:23297720-23298682
FORWARD LENGTH=836
Length=836
Score = 73.1 bits (39), Expect = 2e-11
Identities = 46/49 (94%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 1866 TTGAGTGCCATTGCTAAGATGAACAAGTTTGA-CATTGTCATCTATCTC 1913
|||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 10 TTGAGTGCCATTGCTAAGATGAACAAGTTTGATC-TTGTCATCTCTCTC 57
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158276705165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5