BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474894
Length=2787
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64530.1 | Symbols: | Plant regulator RWP-RK family protein... 4372 0.0
> AT1G64530.1 | Symbols: | Plant regulator RWP-RK family protein
| chr1:23959661-23963081 FORWARD LENGTH=2870
Length=2870
Score = 4372 bits (2367), Expect = 0.0
Identities = 2600/2713 (96%), Gaps = 13/2713 (0%)
Strand=Plus/Plus
Query 81 CTGCTGCTGTTGATGGAACTTGACGATTTGGATCTCAGCGGTTCTTGGCCGTTAGATCAG 140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 148 CTGCTGCTGTTGATGGAACTTGACGACTTGGATCTCAGCGGTTCTTGGCCGTTAGATCAG 207
Query 141 ATCACTTTTGCTTCAAATTTCAAGtctcctctcattttctcttcttccgaacaacctttc 200
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 208 ATCACTTTTGCTTCAAATTTCAAGTCTCCTGTCATTTTCTCTTCCTCCGAACAACCTTTC 267
Query 201 tctcctctctggtccttctccGAAGCTTCCCGAGATGTCGGCGGCGAACTTTACTCCGCC 260
|||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 268 TCTCCTCTCTGGTCCTTCTCCGAAACTTCTGGAGATGTCGGCGGCGAGCTTTACTCCGCC 327
Query 261 GCTGGAGCTCCCACTCGCTTCACCGATTATTCCGTCTTACTCGCTGGTTCTGAATCTGAA 320
|| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 328 GCAGTAGCTCCCACTCGCTTCACCGATTATTCCGTCTTACTCGCTAGTTCTGAATCTGAA 387
Query 321 ACCATGACCAAGGAGGAGAATAATCAGGTTCCTTCTCCGTTATGGGGTATAATGCCGCTG 380
|||| |||| | ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 388 ACCACGACC-A--AGGAGAATAATCAGGTTCCTTCTCCGTCATGGGGTATAATGCCTTTG 444
Query 381 GAGAATCCAGATAGTTACTGTGCCATCAAAGCCAAGATGACTCAAGCGCTTAGATACTTC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAGAATCCAGATAGTTACTGTGCCATCAAAGCCAAGATGACTCAAGCGCTTAGATACTTC 504
Query 441 AAGGAATCTACTGGACAACAACACGTTCTTGCTCAGGTTTGGGCGCCTGTAAAAAACCGT 500
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 505 AAGGAATCTACTGGACAACAACATGTTCTTGCTCAGGTTTGGGCGCCTGTCAAAAACCGT 564
Query 501 GGACGATATGTTCTTACAACTTCAGGACAGCCATTTGTTCTTGGTCCCAATAGTAATGGC 560
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 GGTCGATATGTTCTTACAACTTCAGGACAGCCATTTGTTCTTGGTCCCAATAGTAATGGC 624
Query 561 CTTAATCAATACAGGATGGTTTCCTTGACGTATATGTTTTCCCTTGATGGTGAACGGGAC 620
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 625 CTTAATCAATACAGGATGGTTTCATTGACGTATATGTTTTCCCTTGATGGTGAACGGGAC 684
Query 621 GGAGAGCTCGGGCTTCCCGGACGCGTTTTCAGGAAAAAGTTACCTGAGTGGACTCCTAAT 680
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 685 GGAGAGCTCGGGCTTCCTGGTCGCGTTTTCAGGAAAAAGTTACCTGAGTGGACTCCTAAT 744
Query 681 GTGCAGTATTACTCCAGCAAAGAGTTCTCAAGGCTTGGTCACGCCTTGCACTATAATGTT 740
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 745 GTGCAGTATTACTCCAGCAAAGAGTTTTCAAGGCTTGGTCACGCCTTGCACTATAATGTT 804
Query 741 CAGGGAACTTTGGCTTTGCCTGTTTTTGAACCATCCAGGCAGCTCTGTGTTGGAGTTGTC 800
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 805 CAGGGAACTTTGGCTTTGCCTGTTTTTGAACCATCCAGGCAACTCTGTGTAGGAGTTGTC 864
Query 801 GAGCTTATTATGACTTCTCCAAAGATTAACTATGCACCTGAGGTTGAAAAAGTTTGTAAA 860
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 865 GAGCTTATTATGACTTCTCCGAAGATTAACTATGCTCCTGAGGTTGAAAAAGTTTGTAAA 924
Query 861 GCGCTTGAGGCCGTGAATCTGAAAACTTCGGAAATATTGAACCACGAGACCACTCAGATC 920
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 925 GCGCTTGAGGCCGTGAATCTGAAAACTTCGGAAATATTGAACCACGAGACTACTCAGATC 984
Query 921 TGCAACGAGGGGCGCCAGAATGCATTAGCTGAGATTTTGGAGATACTGACTGTGGTGTGC 980
||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 985 TGCAACGAGGGTCGCCAAAATGCGTTAGCTGAGATTTTGGAGATACTGACAGTGGTGTGC 1044
Query 981 GAGACCTACAAATTGCCTTTAGCTCAGACATGGGTCCCTTGCAGGCATCGCAGTGTTCTA 1040
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1045 GAGACCTACAAACTGCCTTTAGCCCAGACATGGGTCCCTTGCAGGCATCGCAGTGTTCTA 1104
Query 1041 GCCTTTGGAGGTGGTTTTAAGAAAAGCTGTTCGAGCTTCGATGGAAGCTGTATGGGCAAA 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1105 GCCTTTGGAGGTGGTTTTAAGAAAAGCTGTTCGAGCTTCGATGGAAGCTGTATGGGGAAA 1164
Query 1101 GTATGTATGTCTACTAGTGATTTAGCGGTTTATGTTGTGGATGCTCATGTTTGGGGTTTC 1160
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1165 GTCTGTATGTCTACTAGTGATTTAGCGGTTTATGTTGTTGATGCTCATGTTTGGGGTTTC 1224
Query 1161 CGAGACGCTTGTTCTGAACACCATCTGCAGAAGGGACAAGGTGTTGCTGGGCGGGCGTTT 1220
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1225 CGAGACGCCTGTGCTGAACACCATCTGCAGAAGGGACAAGGTGTTGCTGGGAGGGCGTTT 1284
Query 1221 CAGTCTGGAAATTTATGCTTCTGTAGAGATGTCACTCGGTTCTGCAAAACCGACTACCCA 1280
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1285 CAGTCTGGAAATCTATGCTTCTGTAGAGATGTTACTCGGTTCTGCAAAACCGACTACCCA 1344
Query 1281 TTAGTACACTATGCACGCATGTTCAAGTTGACGAGCTGTTTCGCTGTCTGCTTAAAGAGC 1340
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1345 TTAGTACACTATGCACGGATGTTCAAGTTGACGAGCTGTTTCGCGGTCTGCTTAAAGAGC 1404
Query 1341 ACATATACGGGGGATGATGAGTACGTTCTTGAATTCTTTCTTCCTCCAGCCATCACAGAC 1400
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 ACATATACAGGGGATGATGAGTACGTTCTTGAATTCTTTCTTCCTCCAGCCATCACAGAC 1464
Query 1401 AAGAGTGAGCAAGATTGTCTATTGGGTTCTCTGCTTCAGACAATGAAGCAGCACTATTCG 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 AAGAGTGAGCAAGATTGTCTATTGGGTTCTCTGCTTCAGACAATGAAGCAGCACTATTCG 1524
Query 1461 AGTCTCAAGGTTGTTTCTGAAACTGAACTCTGTGAAAACAACATGTCTCTTGAAGTCGTG 1520
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 AGTCTCAAGGTTGTCTCTGAAACTGAACTCTGTGAAAACAACATGTCTCTTGAAGTCGTG 1584
Query 1521 GAAGCTTCGGAGGACGGAATGGTTTACTCGAAACTTGAACCTATCAGGATACATCATCCA 1580
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1585 GAAGCTTCGGAGGACGGAATGGTTTACTCGAAACTTGAACCAATCAGGATACATCATCCA 1644
Query 1581 GCACCAATGTCTAAGGATTATCTTGAGCTCAAAGCACCCGAACAGAAGCTGAACTTAAAC 1640
|||| ||| ||||||||||| ||||||||||| ||||||||||||||| ||| |||||||
Sbjct 1645 GCACAAATCTCTAAGGATTACCTTGAGCTCAACGCACCCGAACAGAAGGTGAGCTTAAAC 1704
Query 1641 TCTGACCTTATGGAGAATATTGAAGTTGATGATGGGTTTGAGAGGTTCCAAACGCTTGAT 1700
|||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1705 TCTGACTTTATGGAGAATAATGAAGTTGATGATGGGGTTGAGAGGTTCCAAACGCTTGAT 1764
Query 1701 CCTATACCCGAGGCCaaaacagtgaaaaaatcagaaaggaaacgtgggaaaacagagaaa 1760
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1765 CCTATACCAGAGGCCAAAACAGTGAAAAAATCAGAAAGGAAGCGTGGGAAAACAGAGAAA 1824
Query 1761 acGATCAGTCTAGAAGTGCTACAACAATATTTTGCTGGTAGTCTAAAAGATGCAGCAAAG 1820
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1825 ACGATCAGTCTAGAAGTGCTTCAACAATATTTTGCTGGTAGTCTAAAAGATGCAGCAAAG 1884
Query 1821 AGCCTCGGAGTTTGCCCAACAACAATGAAACGAATTTGCCGACAACACGGGATCTCACGG 1880
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1885 AGCCTCGGAGTTTGCCCAACAACAATGAAACGCATTTGCCGACAACACGGGATCTCACGG 1944
Query 1881 TGGCCATCTCGAAAAATCAACAAGGTGAACCGATCTCTCACACGACTTAAACATGTTATA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1945 TGGCCATCTCGAAAAATCAACAAGGTGAACCGATCTCTCACACGACTTAAACATGTTATA 2004
Query 1941 GACTCTGTTCAAGGTGCTGATGGGTCACTCAATTTAACGTCCCTCTCTCCTCGCCCTTGG 2000
||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 2005 GACTCGGTTCAAGGTGCTGATGGATCACTCAACTTGACGTCCCTCTCTCCTCGCCCTTGG 2064
Query 2001 CCTCACCAAATCCATCCAATCGAAAACCAATTACCAAAGAAATGCCCTCCAACTTCTACA 2060
||||||||||||| ||||||||| | ||||||| ||||||| ||||||||||||||||||
Sbjct 2065 CCTCACCAAATCCCTCCAATCGATATCCAATTAGCAAAGAACTGCCCTCCAACTTCTACA 2124
Query 2061 TCTCCCCTAAGTAATCTCCAAGATGTCAAAATCGAAAACAGAGATGCAGAAGACAGTGCA 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 TCTCCCCTAAGTAATCTCCAAGATGTCAAAATCGAAAACAGAGATGCAGAAGACAGTGCA 2184
Query 2121 GGTTCATCAACATCGCGTGCTTCTTGCAAAGT-AAGTCCTATTTGCGAGACGCGTTTTCG 2179
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2185 GGTTCATCAACATCGCGTGCTTCTTGCAAAGTGAA-TCCTATTTGCGAGACGCGTTTTCG 2243
Query 2180 GCTCCCAACACACAACCAAGAACCATTCAGACAAACGGGCTTGGACGATTCTGACAGTAG 2239
||| || ||||||||||||||||||| ||||||| || |||||||||||| || |||||
Sbjct 2244 GCTTCCTACACACAACCAAGAACCATCCAGACAAGTGGCCTTGGACGATTCGGATAGTAG 2303
Query 2240 CTCTAAAAACATAACAAATTTTTGGACACACTTAAGTTGCCAAGATACAGCTTCTCCAAC 2299
|||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 2304 CTCTAAAAACATGACAAATTTTTGGGCACACTTAACCTGCCAAGATACAGCTTCTCCAAC 2363
Query 2300 AACACTTCA-CAATAAGCTCGTGAGTATAAAGGCAACGTACAGAGAAGACATCATCAGGT 2358
|| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2364 AATTCTCCAACA-TAAGCTCGTGAGTATAAAGGCAACGTACAGAGAAGACATCATCAGGT 2422
Query 2359 TCAAGATCTCACCAGAGTCGGTAAGCATTACGGAACTTAAGCAGCAGGTGGCCAAGAGGC 2418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2423 TCAAGATCTCACCAGAGTCGGTAAGCATTACGGAACTTAAGCAGCAAGTGGCCAAAAGGC 2482
Query 2419 TGAAGCTCGAAACAGCAGCGTTTGAGCTCAAGTATCTAGACGATGACAGAGAATGGGTCT 2478
||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 2483 TGAAGCTCGAAACGGCAGCCTTTGAGCTCAAGTATCTAGACGACGATAGAGAATGGGTCT 2542
Query 2479 CGGTCTCATGCGATGCTGACCTCAGCGAGTGCCTTGACACGTCTGCAGCGAAAGCGAACA 2538
| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 2543 CCGTCTCATGCGATGCTGACCTCAGCGAATGCCTCGACACGTCTGCAGCAAAAGCGAACA 2602
Query 2539 CACTGAGGCTCTCAGTACATGACGTGACTTTTAACTTTGGGAGCTCATGCGAAAGCTCAG 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2603 CACTGAGGCTCTCAGTACATGACGTGACTTTTAACTTTGGGAGCTCATGCGAAAGCTCAG 2662
Query 2599 AGGCAACTATGATGTGCTTGTGACAATGCTTCACTTGTATACAACTTTCTTGTATGGATC 2658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2663 AGGAAACTATGATGTGCTTGTGACAATGCTTCACTTGTATACAACTTTCTTGTATGGATC 2722
Query 2659 TGAGAGTTTTGTTCCTTTTTTCTT-TGTGGGAACATGT-TTCTTTAGAAGAGAAGTTTTA 2716
||||||||||||| ||| ||| || | ||| ||||||| |||||||||||| | ||||||
Sbjct 2723 TGAGAGTTTTGTTTCTTATTT-TTCTCTGGAAACATGTCTTCTTTAGAAGA-AGGTTTTA 2780
Query 2717 GTGTTCTAtttttttA-A-GATGTATAAAAGCACACTTCTCCCCATCAATAGATGTTGAT 2774
|||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2781 GTGTTCTATTTTTTTATAAGATGTATAAAAGCACACTTCTCCACATCAATAGATGTTGAT 2840
Query 2775 TGGAATAATAATA 2787
||||||||| |||
Sbjct 2841 TGGAATAATGATA 2853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138460762680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5