BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474896
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64510.1 | Symbols: | Translation elongation factor EF1B/r... 1085 0.0
> AT1G64510.1 | Symbols: | Translation elongation factor EF1B/ribosomal
protein S6 family protein | chr1:23954803-23956255
REVERSE LENGTH=864
Length=864
Score = 1085 bits (587), Expect = 0.0
Identities = 707/760 (93%), Gaps = 27/760 (4%)
Strand=Plus/Plus
Query 7 TGGCGTCTTCGCTATGTCTATCGAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 66
||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 52 TGGCGTCTTCGCTGTGTGTATCAAATTCCACAATTTGCCCTCTGCCTAATGTATCTTCGC 111
Query 67 AGCCGCTGCTCTCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTGTTT 126
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 112 AGCCGCTGCTATCATTCTCCCACTCTCTCAGGCCATTCATTTCCAAGTCGAAACCTATGT 171
Query 127 GTGCCTCGCTACAACAACAGCAGAAGAGAGATGGCTCTCAATTTGTGGTAAAATCTCAGG 186
|||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 172 GTGCCTCG--------ATA-CAGAAGAGAGATGGCTCTCAATTTGTGGTGAAATCTCAGG 222
Query 187 CTCTTGATTTCTCCGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 246
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTCTTGACTTCTCTGGAACTTTCTTTGAAGGTGGATTCGGGTCGGATGATGACCCGACTT 282
Query 247 CTCCTCCCGGGTCGGGAGTCTCAACTGCCCTTGAGGACAAACCGGAACCTCAGTGCCCAC 306
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 283 CTCCTTCCGGGTCGGGAGTCTCAACTGCCCTTGAAGACAAACCGGAACCTCAGTGCCCAC 342
Query 307 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CTGGGCTCAGGCAGTACGAAACAATGGCGGTTTTGAGACCAGACATGTCTGAAGATGAAC 402
Query 367 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 GGCTTGGTCTTACCCAGAAATACGAAGAGTTGCTTGTGGCAGGAGGTGGAATGTATGTGG 462
Query 427 AAGTGTTCAACAGAGGAGTGATTCCATTAGCTTACAGCATTAGAAAGAAGAACAAAGCTG 486
||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 463 AAGTGTTTAACAGAGGAGTGATTCCGTTGGCTTACAGCATAAGAAAGAAGAACAAAGCTG 522
Query 487 GAGAAACCAACACTTACCTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 546
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GAGAAACCAACACTTACTTGGATGGAATCTACCTTCTCTTCACTTACTTCACCAAACCCG 582
Query 547 AGTCAATAACTCCGCTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 606
| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AATCAATAGTTCCACTCGAGACCGTTCTCACTGCCGACGATGACATTATCCGATCATCTT 642
Query 607 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGAGACCATGAACATTGTGTATGTG--- 663
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 643 CCTTCAAGATAAAGAAGAGGAAGTACAACTGAAGA--CCATGAACATTGTGTATGTGAGA 700
Query 664 ----TG--A-ATT-TTTTG--GTTTCTTTGGAAGAACAAAAGTAAATCTATCTTTATTTG 713
|| | ||| |||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct 701 AAAATGTCAGATTCTTTTTTTGTTTCTTTGTAAGAACAAAAGTAAATCTATCTTT-TTTG 759
Query 714 GATCtttttttATGCATTGCTCTGTTTTCT-ACTGTAACT 752
|||||||||| |||||||||||| ||||| | |||||||
Sbjct 760 TATCTTTTTTTGTGCATTGCTCTGCTTTCTTA-TGTAACT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5