BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474900

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37120.1 | Symbols:  | transposable element gene | chr5:1467...   403    3e-112
  AT4G18420.1 | Symbols:  | transposable element gene | chr4:1017...   287    4e-77 


> AT5G37120.1 | Symbols:  | transposable element gene | chr5:14677666-14677962 
FORWARD LENGTH=297
Length=297

 Score =  403 bits (218),  Expect = 3e-112
 Identities = 242/254 (95%), Gaps = 0/254 (0%)
 Strand=Plus/Plus

Query  1    CTAAGGAACGATGATCACGTTTTTAAATGGGTTGATGAAGCTTTGATCAATGAGATAGAT  60
            ||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||| 
Sbjct  7    CTAAGGAACAATAATCACATTTTCAAATGGGTTGATGAAGCTTTGATCAATGAGATAGAG  66

Query  61   ACATTGACAGCAAAGCATGGTGAAATTGAGAAGGAGCTGAAAGAGCTTAGAAGAGAGAGG  120
            ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct  67   ACATTGACAGCAAGGCATGGTGAAATCGAGAAGGAGCTGAAAGAGCTTAGAACAGAGAGG  126

Query  121  TTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTTGAAATGAACATGGAGAAGGAGTTGAAT  180
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  127  TTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTGGAAATGAACATGGAGAAGGAGTTGAAT  186

Query  181  GAGAAAGTAGAAGAAGCTTTGTCTGAAGCGAAAAGAAGCAATAAGAAGATGATGATTGTC  240
            |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  187  GAGAAAGTTGAAGAAGCTTTGTCTGAAGCGAAAACAAGCAATAAGAAGATGATGATTGTC  246

Query  241  GTAGTGTTAGGGTG  254
            |||||||| |||||
Sbjct  247  GTAGTGTTCGGGTG  260


> AT4G18420.1 | Symbols:  | transposable element gene | chr4:10174411-10174960 
REVERSE LENGTH=465
Length=465

 Score =  287 bits (155),  Expect = 4e-77
 Identities = 224/257 (87%), Gaps = 6/257 (2%)
 Strand=Plus/Plus

Query  1    CTAAGGAACGATGATCACGTTTTTAAATGGGTTGATGAAGCTTTGATCAATGAGATAGAT  60
            |||||||| ||||| |||  |||||||||||||||||| || ||| ||||||||||||| 
Sbjct  175  CTAAGGAATGATGAACACACTTTTAAATGGGTTGATGATGCCTTGCTCAATGAGATAGAG  234

Query  61   ACATTGACAGCAAAGCATGGTGAAATTGAG-AAGGAGCTGAAAGAGCTTAGAAGAGAGAG  119
            |||||| |||||||  |||||||| ||||| ||  ||||||||||||||| || ||||| 
Sbjct  235  ACATTGGCAGCAAAAAATGGTGAATTTGAGCAA-AAGCTGAAAGAGCTTACAATAGAGAA  293

Query  120  GTTGGAGTTTGAGAAGATGGTTTCCGAGAAGGTTGAAATGAACATGGAGAAGGAGTTGAA  179
             ||||||||||| ||||||||||||||||||||||||||||| || ||||||||| | | 
Sbjct  294  ATTGGAGTTTGAAAAGATGGTTTCCGAGAAGGTTGAAATGAAGATAGAGAAGGAGGT-AC  352

Query  180  T-GAGAAAGTAGAAGAAGCTTTGTCTGAAGCGAAAAG-AAGCAATAAGAAGATGATGATT  237
            | |||||||| |||||||||||||||||||||||| | ||||||||||||| | ||||||
Sbjct  353  TTGAGAAAGTTGAAGAAGCTTTGTCTGAAGCGAAA-GCAAGCAATAAGAAGCTAATGATT  411

Query  238  GTCGTAGTGTTAGGGTG  254
            ||| | |||||||||||
Sbjct  412  GTCATGGTGTTAGGGTG  428



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5