BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474906
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64430.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3061 0.0
> AT1G64430.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23933380-23936866 FORWARD LENGTH=2040
Length=2040
Score = 3061 bits (1657), Expect = 0.0
Identities = 1904/2019 (94%), Gaps = 33/2019 (2%)
Strand=Plus/Plus
Query 4 AACCTAAGCAATAGATAGAA-Caaaaaaaa-a--aGCATTAGAGACCGTTGG--T-TTCT 56
|||| ||||||||||||||| ||||||||| | | |||||||||||||||| | ||||
Sbjct 6 AACCGAAGCAATAGATAGAACCAAAAAAAATACTATCATTAGAGACCGTTGGTTTCTTCT 65
Query 57 TCCCTCTTTCTTAGCCTCTCGTTTCTCATCTCCGAGAACCACCACCGATATGCTCCTCCG 116
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 66 TCCCTCTTTCTTAGCCTCTCGTTTCTCATCTCCGAGAACCACCACCG--ATGCTCCTCCG 123
Query 117 TCTTCTTCGCCGGTGATTTTGTCTTCCGATT-ATAGTCAATGAGTCTCCGTGTAGTTTCC 175
||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 124 TCTTCTTCGCCGGTGATTTTGTCTTCCGATTGTTA-TCAATGAGTCTTCGTGTAGTTTCC 182
Query 176 TCCGTTTTCTCCGGAATCAATCGAACCCCTAACCTCCACGAGACTCATACTCTTTTTCGC 235
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 183 TCCGTTTTCTCCGGAATCAATCGAATCCCTAACCTCCACGAGACTCATACTCTTCTTCGC 242
Query 236 TCTCATGTCTTCTCTTTCTTCTTCAAACCGGCGAATATCGGTAGTATACGGCGACCGATT 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 243 TCTCATGTCTTCTCTTTCTTCTTCAAACCGGCGAATATCGGTAGTATACGGCGACTG-GT 301
Query 296 C-TATTCTCATCCTATGGAGAGCGGAGTAGAGACAGTGTCAGAGCCGCCGCCGATGTTTC 354
| ||| | |||| |||||||| ||||| ||||| ||||| | ||||||||||||||||
Sbjct 302 CTTATCCCCATCATATGGAGACCGGAGCAGAGATAGTGTTGGCTCCGCCGCCGATGTTTC 361
Query 355 GACGTCTATTCTCGACGACGAGCTTTTGAGCAGCGTATCCGCCGTTAGAGACGCGGATGA 414
| | ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 362 GTCATCTATTCTCGACGACGAGCTTCTGAGCAGCGTATCCGCCGTTAGAGATGCCGATGA 421
Query 415 AGCGCTCGAGATGATTTCGGATCGGTTCGGGTCAAATCGCGGTGGAATCGTTGAACTTGA 474
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AGCGCTCGCGATGATTTCTGATCGGTTCGGGTCAAATCGCGGTGGAATCGTTGAACTTGA 481
Query 475 AGATTGCCGTTCGATTATCTCCGCTGCTGTCAGTCGCGGCAATGTGGACCTTGCGTTGTC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 AGATTGCCGTTCGATTATCTCCGCTGCTGTCAGTCGCGGCAATGTGGACCTTGCGTTGTC 541
Query 535 GATATTCTACACCATGCGAGCGAGTTTCGATTTAGGTGGAAGTGACAATGATCGATGGAG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GATATTCTACACCATGCGAGCGAGTTTCGATTTAGGTGGAAGTGACAATGATCGATGGAG 601
Query 595 ATGGTCAAGGCCTGATGTTGAAGTGTACACGATGTTGGTTAATAGTCTTGCTGCTTCCTT 654
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 602 TTGGTCAAGGCCTGATGTTGAAGTGTACACGATGTTGGTTAATGGTCTTGCTGCTTCCTT 661
Query 655 AAGGGTTTCTGATTCTCTAAGAATCATCAGAGATATTTGCCGTGTTGGTATCTCCCCTGC 714
|||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 662 AAGGGTTTCTGATTCTTTAAGGATTATCAGAGATATTTGCCGTGTTGGTATCTCCCCTGC 721
Query 715 TGAGGAGGTTCCCTTTGGTAAAATTGTGCGATGTCCGA-CATGTTTGATTGCCATCGCTG 773
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||
Sbjct 722 TGAGGAGGTTCCCTTTGGTAAAATTGTGAGATGTCCGAGC-TGTTTGATTGCCATAGCTG 780
Query 774 TTGCACAACCCCAGCATGGAGTTCAGATTGCATCTTGCGCTAATTGCCGTTACCAATACG 833
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 TTGCACAACCACAGCATGGAGTTCAGATTGTATCTTGCGCTAATTGCCGTTACCAATACG 840
Query 834 AGCTTTTCTCTGGTGACATAACCAGCATTGAATCTGAAGAGCTCGGCAAGGACATTCCTC 893
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 841 AGCTTTTCTCTGGTGACATAACTAGCATTGACTCAGAAGAGCTCGGCAAGGACATTCCTC 900
Query 894 TCTGGGAAAAAGGGCTCAGACTAATCCAGATTAAGAAGAACAAAATCACATCTTCGGTGC 953
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 901 TCTGGGAAAAAGGGCTCAGACTTATCCAGATAAAGAAGAACAAAATCACATCTTCAGTGC 960
Query 954 ACTCTATTGTGGTACAAACTCCTTCTGGTACAGCACGAACACACCGGTTTGCCACTGAGA 1013
|||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 961 ACTCTATTGTGGTACAGACTCCTTCCGGTACAGCACGAACGCACCGGTTTGCCACTGAGA 1020
Query 1014 CAGCTGAGCTCCCTGCGCAAGAAGGAGAAAGAGTGACAATTGCATCTGCTGCTCCTTCTA 1073
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 CAGCCGAACTCCCTGCGCAAGAAGGAGAAAGAGTGACAATTGCATCCGCTGCTCCTTCTA 1080
Query 1074 ATGTTTACAGACAGGTGGGACCGTTCAAGTTTATCCCCAAAGCTCCAAACTTTTACCCTG 1133
||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1081 ATGTTTACAGACAAGTGGGACCTTTCAAGTTTATCTCCAAAGCTCCAAACTTTTACCCTG 1140
Query 1134 GAGAACCTATGAGCCTCACAAAACACAAGGATGGACGAGAATCTCTCTTGCTAAGGCCTC 1193
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1141 GAGAACCTATGAGCCTCACAAAACACAAGGATGGACGAGAATCTATCTTGCTAAGGCCTC 1200
Query 1194 CTAGTAAAGATGGAGATAAGATCTTGCAACCCTCGTTTCTAATACCTCTTCTTGCTGTTT 1253
||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1201 CTAGTAAAGATGGAGATAAGATCTTACAACCCTCGTTTCTAATACCCCTTCTTGCAATTT 1260
Query 1254 TGGCTACTGGAGATGCTGCTTCTGGTATTATTGATCCCAGTTTGCCTCAATTACTCTCAG 1313
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1261 TGGCTACTGGAGATGCTGCTTCTGGTGTTATTGATCCCAGTTTGCCTCAGTTACTCTCAG 1320
Query 1314 TTGCTGCTGTTACATCACTAGCGATCGGAGCAACCGTAAATTCTTTTGTCCTTCCTCAGC 1373
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1321 TTGCTACTGTTACATCACTAGCGATAGGAGCAACCGTAAATTCTTTTGTCCTTCCTAAGC 1380
Query 1374 TAAATCAGCTCCCTGAACGAACAGTAGATGTGGTTGGTATCAAGCAGCAACTTTTATCGC 1433
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1381 TAAATCAGCTCCCTGAGCGAACAGTAGATGTGGTTGGTATCAAGCAGCAACTTTTATCTC 1440
Query 1434 AGTATGATGTGCTCCAGCGTCGCATTAGAGATCTAAAAGAAGCAGTTGAGAAAGAGGTGT 1493
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AATATGATGTGCTCCAGCGTCGCATTAGAGATCTAAAAGAAGCAGTTGAGAAAGAGGTGT 1500
Query 1494 GGATGTTAGCTAGAATGTGCCAGCTTGAGAACAAAATTTTAGCTGTGGGGGAGCCAGCTT 1553
||||||| ||| ||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 1501 GGATGTTGGCTCGAATGTGCCAGCTCGAGAACAAAATTTTAGCAGTGGGAGAGCCAGCTT 1560
Query 1554 ACCGTACTCGAAGAACAAGAGTAAAGAAGGTAAGAGAAAGTCTAGAGAACTCGATAAAGG 1613
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1561 ACCGTACTCGAAGAACAAGAGTAAAGAAGGTACGAGAAAGTCTAGAGAACTCCATAAAGG 1620
Query 1614 GAAAGATTGAGCTGATCGATAGTTATGCCAGAATATCTTCAATGATTGAGATCGAGGTGG 1673
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1621 GAAAGATTGATCTGATCGATAGTTATGCTAGAATATCTTCAATGATTGAGATTGAGGTGG 1680
Query 1674 AAATGGACACTGATGTTCTTGCAGCCGAGGCAGTGAACAATACTGAAAACATTGCGCAAC 1733
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1681 AAATGGACAGTGATGTTCTTGCAGCCGAGGCAGTGAACAATACTGAAAACATTGCTCAAC 1740
Query 1734 AGATAGAGCAGATCATGGAACTTGAAAACCTTGAAGAGAAATGGAAAATACAGGCTGAAG 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AGATAGAGCAGATCATGGAACTTGAAAACCTTGAAGAGAAATGGAAAATACAGGCTGAAG 1800
Query 1794 CAAACGACGAGGCCGAAAGACTACTTAGCTCCCAACCTTAATTAAACACACACTCTTGTC 1853
||||||||||||||||||||||||||||||||||||||||| | |||||||| | |||
Sbjct 1801 CAAACGACGAGGCCGAAAGACTACTTAGCTCCCAACCTTAAGCACTCACACACT-T-GTC 1858
Query 1854 AACAAAAACCGGTCAAAAACTCTGGAGCATCACTAAAAGTTAAGTTTCTTTTGTCGGTCG 1913
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1859 AACAAAC-CCGGTCAAAAACTCTGGAGCATCGCTAAAAGTTAAGTTTCTTTTGTCGGTCG 1917
Query 1914 CTATAAGTTAATGTTGATAAATTTGTTT-T--TA--ATA----A-T---CACCGAAA-CT 1959
|||||||||||||||||||||||||||| | || ||| | | |||||||| |
Sbjct 1918 CTATAAGTTAATGTTGATAAATTTGTTTGTAATACTATAGTTTAATAATCACCGAAATC- 1976
Query 1960 ATTACTTTATTGTTTCTTGTCCATTTGTAATCttttttt 1998
|||| ||| ||||||||||||||||||||||||||||||
Sbjct 1977 ATTAATTTCTTGTTTCTTGTCCATTTGTAATCTTTTTTT 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98995474740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5