BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474908

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64405.1 | Symbols:  | unknown protein; Has 13 Blast hits to...   556    4e-158


> AT1G64405.1 | Symbols:  | unknown protein; Has 13 Blast hits 
to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:23923732-23924336 FORWARD 
LENGTH=605
Length=605

 Score =  556 bits (301),  Expect = 4e-158
 Identities = 399/443 (90%), Gaps = 20/443 (5%)
 Strand=Plus/Plus

Query  1    ATTTTGTTTTT-GGTGTTAATGGGTAATTGCATGGAGAGATGGTTGCAAGGAGAAGGGGA  59
            ||||| ||||| ||  || ||||| |||||||||||||||||| ||||||||||||||||
Sbjct  51   ATTTT-TTTTTGGGAATTGATGGGCAATTGCATGGAGAGATGGATGCAAGGAGAAGGGGA  109

Query  60   AGATGGAAAGATAGAGGTGACAGAAAGAGCCAAAGAGTCCTTCAAACTTGATGGTGATGA  119
            ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  110  AGAAGGAAAGATAGAGGTGACAGAAAGAGCAAAAGAGTCCTTCAAACTTGATGGTGATGA  169

Query  120  TAATGGAGATGGTCATGGTGGGATGAAGGTGAAGATAGTGCTTACAAGACATGAATTGGA  179
             |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct  170  CAATGAAGATGGTCATGGTGGGATGAAGGTAAAGATCGTGCTTACAAGACATGAATTGGA  229

Query  180  CATGTTTTTGCTTCAGATGAATAGGAATCATGATGGAAACTTGATGATTACCAGAGATGT  239
            |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct  230  CATGTTTTTGCTTCAGATGAATAGGAGTCATGATGGAAACTTGATGATTACCAAAGACGT  289

Query  240  TATGGTAGAGCTAGAGAAGAGGATCATAAGAGCTTCATCATTGTCATCAC---CATCGTC  296
            |||||||||||||||||||||||||||||||||||| ||||| |||||||   |||| ||
Sbjct  290  TATGGTAGAGCTAGAGAAGAGGATCATAAGAGCTTCGTCATTCTCATCACTATCATCATC  349

Query  297  G-----AT-G---GCATGGGAACCGTCTTTAGAGAGCATTGTGGAGTGTCCAGAAGTCCA  347
                  || |   |||||||||||| |||||||||||||  |||||||||||||||||||
Sbjct  350  ACCTTCATCGATAGCATGGGAACCGGCTTTAGAGAGCATCCTGGAGTGTCCAGAAGTCCA  409

Query  348  GGAAATGGATAGATGAAGATTGTATAAAGATGTGTTCTATTTTTGATAAAAATGAGTTTG  407
            |||||||||||||| ||||| |  ||||||||||    |||| |||||||||||||||||
Sbjct  410  GGAAATGGATAGATAAAGAT-GC-TAAAGATGTG----ATTTATGATAAAAATGAGTTTG  463

Query  408  ATCATGATGATCATCATATATTG  430
            |||||||||||||||||||||||
Sbjct  464  ATCATGATGATCATCATATATTG  486



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5