BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474912
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64380.1 | Symbols: | Integrase-type DNA-binding superfamil... 1650 0.0
> AT1G64380.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:23890646-23892173 REVERSE LENGTH=1528
Length=1528
Score = 1650 bits (893), Expect = 0.0
Identities = 1088/1177 (92%), Gaps = 34/1177 (3%)
Strand=Plus/Plus
Query 41 AAATTCTACTTTTCTTTCAAAACCAATCTCTCATTATCTCAATCATATTCTTGTTCAATC 100
|||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||
Sbjct 29 AAATTCTACTTTTCTTTCAAAAACAATCTCTCATTATCTCAATCTTACTCTTGTTCAATC 88
Query 101 TCTTTTGAACTTGAAAATCCTTC-TTTTGCTCAAATCAAACACAATAGTTAGGGTTTCTT 159
||||||||||||||||| || || || | |||||||||||||||| |||||||||||||
Sbjct 89 TCTTTTGAACTTGAAAAACCATCATTCT-ATCAAATCAAACACAATTGTTAGGGTTTCTT 147
Query 160 TCTT-TCTTATACT-C-C---A---C-------G---AAATGGAAGAAAGCAATGATCTT 200
| || ||||||||| | | | | | |||||||||||||||||||| ||
Sbjct 148 T-TTATCTTATACTCCACGAAACGTCTGGTTGAGAAAAAATGGAAGAAAGCAATGATATT 206
Query 201 TTTCAGACCAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATA 260
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TTTCAGAACAATTTCAGTCCTAAAATCTCAGAAATCAGAGCATCTCTGTCTCAGATCATA 266
Query 261 TTAGCAGGAGGACCAAACACACTCGACTCAATCTTCTCACTTCTCACTCCCTCCACCGTA 320
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 267 TTAGCAGGAGGACCAAACACACTCGACTCAATCTTCTCACTTCTCACTCCCTCCTCCGTA 326
Query 321 GAATCCGCCGCAACATCTTTCAACAATCTCAATCCTCAGCCACCGCCGCAGCTCGGCTCC 380
||||||||| ||||||| ||||||| || |||||||| |||||||||||||||||| |||
Sbjct 327 GAATCCGCCACAACATCATTCAACACTCACAATCCTCCGCCACCGCCGCAGCTCGGGTCC 386
Query 381 TCCGTCTATCTCCGGCAACGAGATATCATCGAGAAATTCCACCTTCAAAACAGAGCAATC 440
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 387 TCCGTCTATCTCCGCCAACGAGATATCATCGAGAAGTTCCACCTTCAGAACAGAGCAATC 446
Query 441 TCCACTACTCATCCTCCTCTGTTTTCCTCATCGTTCGATCATCATCAAACTTCCGAGCTA 500
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 447 TCCACTCCTCATCCTCCTCTGTTTTCCTCAACGTACGATCATCATCAAACTTCCGAGCTA 506
Query 501 ATGCTCCAAGCGGCGGCCGGGACTCCAGCCGCCGCTTTCGCAGCTGCGTTAGCGGCTGGG 560
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 507 ATGCTCCAAGCGGCGGCCGGGTCTCCAGCCGCCGCTTTCGCCGCTGCGTTAGCGGCTGGG 566
Query 561 AGGACGACGAAAAAGAAGAAACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGG 620
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AGGGTGACGAAAAAGAAGAAACTTTACAGAGGAGTGAGGCAGAGACATTGGGGAAAATGG 626
Query 621 GTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTACTTACGACACG 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 GTTGCGGAGATAAGATTGCCGCAAAACAGAATGAGGGTTTGGTTAGGTACTTACGACACG 686
Query 681 GCGGAAGCCGCCGCTTATGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATATGCT 740
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 687 GCGGAAGCCGCCGCTTACGCTTACGATCGCGCCGCCTATAAGCTCCGTGGAGAATACGCT 746
Query 741 CGTCTCAATTTCCCAAATCTCAAAGACCCGAGTGAGTTACTCGGACTCGGAGATTCCTCC 800
||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 747 CGTCTCAATTTTCCTAATCTCAAAGACCCGAGTGAGCTACTCGGACTCGGAGATTCCTCT 806
Query 801 AAGCTGATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCGATTTGCCagagagtc 860
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 807 AAGCTAATAGCTCTCAAGAACGCCGTCGACGGGAAGATCCAATCCATTTGCCAGAGAGTC 866
Query 861 agaaaagagagagcaaaaaagagcgggaaagtgagcaaaaaCTCGTCGGCGACGGCGGAT 920
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 867 AGAAAAGAGAGAGCAAAAAAGAGCGTAAAAGTGAGCAAAAACTCGTCGGCCACGGCGGAT 926
Query 921 TCTTCGTGTTTGTCATCGCCGGAGATTCTTTCGTCGTCTCCGGCGACGACAACTGCTACT 980
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||
Sbjct 927 TCTTCGTGTTTGTCATCGCCGGAGATTCTGTCGTCGTCTCCGGTGACGACAACTACTACT 986
Query 981 GCGGTTACTTCAGAGGATAGTTACTGGGTTTCGCCTATGGGTTTGTGTAACAGCGAGATT 1040
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || | |
Sbjct 987 GCGGTTACTTCAGAGGATAGTTATTGGGTTTCACCTATGGGTTTGTGTAACAGTGAAAAT 1046
Query 1041 AGTTCTCCGGCATCGGTTTCGGTCTCCGATGAGATTCCAGCGATGACGACGGCGATGGCG 1100
|||||||||| ||| ||||||||| || | | || || | || |||||| ||||
Sbjct 1047 AGTTCTCCGGTATCAGTTTCGGTC-CCTA-GTGA----AG---T-AC--CGGCGACGGCG 1094
Query 1101 GAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTCTTGCTAGCGAGGATGCCATCG 1160
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1095 GAGGAAGAGGCAATGATGGGAGTGGACACTGATGGGTTTTTATTAGCGAGGATGCCATCG 1154
Query 1161 TTCGATCCAGAGCTTATTTGGGAAGTTCTTGCCAATT 1197
|||||||||||||| ||||||||||||||||||||||
Sbjct 1155 TTCGATCCAGAGCTGATTTGGGAAGTTCTTGCCAATT 1191
Score = 257 bits (139), Expect = 2e-67
Identities = 188/209 (90%), Gaps = 13/209 (6%)
Strand=Plus/Plus
Query 1198 GAAAAATTAGGGTTTTAGGTGTGAATTTAGGGTTTAAA--CAAA----A-CTTTTGTTAA 1250
|||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||
Sbjct 1278 GAAAAATTAGGGTTTTAGGTGTTAATTTAGGGTTTAAAGTAAAACCGGATCTTTTGTTAA 1337
Query 1251 AATCATTCGAAAGTTGTTAAATAATATAATTAGGGTTTCTTGATTACAATCTAAAGCCTC 1310
|||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct 1338 AATCATTCGAAAGTTGTTAAATAATATAATTAGGGTTTCTCAAATACAATGTAAAGCCTC 1397
Query 1311 GTGGTTTTTGAAAGAGGTTGTGAAAGCTCCttttttttGAATTTCTAT---A--TCATCG 1365
||||||||||||||||||||||||||||||||||||| |||||||| | | ||||||
Sbjct 1398 GTGGTTTTTGAAAGAGGTTGTGAAAGCTCCTTTTTTT-GAATTTCTGTTTTAGATCATCG 1456
Query 1366 AAGGACTTTCTTTGTGATTGTACTTAGAA 1394
||||||||||||| |||||||||||||||
Sbjct 1457 AAGGACTTTCTTTCTGATTGTACTTAGAA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5