BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474914
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64360.1 | Symbols: | unknown protein; Has 6 Blast hits to ... 503 6e-142
> AT1G64360.1 | Symbols: | unknown protein; Has 6 Blast hits to
6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:23887870-23888533 FORWARD LENGTH=563
Length=563
Score = 503 bits (272), Expect = 6e-142
Identities = 375/422 (89%), Gaps = 18/422 (4%)
Strand=Plus/Plus
Query 1 ATGTCGTTTAGAAAAGTAGAGAAGAAACCAACCGAAATGGGCCGACAGATGACCCACGAG 60
|||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 59 ATGTCGTTTAGAAAAGTAGAGAAGAAACCAACTGAAATGGGCCGAAACATGACCCACGAG 118
Query 61 AAGTCGGACTCTGACTCAGACAACGAAGGAACCCCCATGACGGCTGGCGGTTACACTGAA 120
|||||||||||||| || |||||||||||| |||||||||| | ||| ||||||||||||
Sbjct 119 AAGTCGGACTCTGATTCGGACAACGAAGGAGCCCCCATGACTGTTGGAGGTTACACTGAA 178
Query 121 TTCGTTGCCCGCAGCGACTCTGACTGGGACGAACCTTTTTATTCTGGCAAAGCCCGTTCT 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 179 TTCGTTGCCCGCAGCGACTCTGACTGGGACGAACCGGTTTATTCTGGCAAAGCCCGTTCT 238
Query 181 AA------CCTCACCGCCAA-G-AAAA----CTGGTCCCACCAATAGCTACAGCCGCAAA 228
|| |||||||| || | |||| ||||||||| |||||||| ||||||||||
Sbjct 239 AATTATAACCTCACCGGCACCGCAAAAGGAACTGGTCCCATCAATAGCTTCAGCCGCAAA 298
Query 229 AATTTCTCTAATAACTAATCATATGGGCT-TGGCAACGTAAAAGTGAGAAATGAAGATAT 287
| ||| ||||| ||||||||||||||| || | |||||||||||||||| ||||| ||
Sbjct 299 CACTTCCCTAATTACTAATCATATGGGCAGTG-CTACGTAAAAGTGAGAAACGAAGACAT 357
Query 288 GCAAGCTCA-T---TAGTTAAATAATGCCCATATAACTTATGTATTATGTCTGAATGTCA 343
||| ||||| | ||||| |||||||||||||||| ||||||| ||||||||||||| |
Sbjct 358 GCAGGCTCACTAGCTAGTTGAATAATGCCCATATAAATTATGTACTATGTCTGAATGTAA 417
Query 344 TAAATAAGAATCCAAGGATGGATGATGCCGCATGAACATATCAATGATTATAGTCTCATT 403
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 TAAATAAGAATCCAAGGATGGATGATGACGCATGAACATATCAATGATTATAGTCTCATT 477
Query 404 GT 405
||
Sbjct 478 GT 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5