BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474915

Length=772
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64355.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...  1044    0.0  


> AT1G64355.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 
Protein of unknown function DUF3593 (InterPro:IPR021995); 
Has 301 Blast hits to 301 proteins in 96 species: Archae 
- 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; 
Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). 
| chr1:23886084-23887212 FORWARD LENGTH=893
Length=893

 Score = 1044 bits (565),  Expect = 0.0
 Identities = 620/646 (96%), Gaps = 5/646 (1%)
 Strand=Plus/Plus

Query  1    TCTCTCACCGTGAGAGTAACAGAGAGACATGATTCTGATAAATTCTAACTCTCCGACGCT  60
            |||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||
Sbjct  41   TCTCTCACCGCGAGAGTAACCGAGAGACATGATTCTGATAAACTCTAATTCTCCGACGCT  100

Query  61   AATCTCAGCCGTTAGATTTGTGGGCTCATCTCCGTTCACCACTCGGGGGCTTTCTCAGTC  120
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  101  AATCTCAGCCGTTAGATTCGTGGGCTCATCTCCGTTCACCACTCGGGGGCTTTCTCAGTC  160

Query  121  TACTGTCTCAATCTCTAGAAACAAAAGCTTCTTCTTGCACTTCACCGATACGAAAGAGAA  180
             ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct  161  CACTGTCTCAATCTCTAGAAACAAAAGCTTCTTCTTCCACTTCACCGAGACGAAGGAGAA  220

Query  181  GAAAGCAAGAAGAGATGATTTGAGAGTATCAATCGTGTGTGACGCAGGAGGGATGTTTCC  240
            ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  221  GAACGCAAGAAGAGATTATTTGAGAGTATCAATCGTGTGTGACGCAGGAGGGATGTTTCC  280

Query  241  GGTGGATCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCACAACTCTTCGCTGT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  281  GGTGGATCCATGGGCTCCAACCATTGATTCACAGAGCATAGCATCACAACTCTTCGCTGT  340

Query  301  GTCTCTGTTTCCATACATTGGCTTTCTCTATTTCCTCACTAAATCCAAATCAGCTCCAAA  360
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  341  ATCTCTGTTTCCTTACATTGGCTTTCTCTATTTCCTCACTAAATCCAAATCAGCTCCAAA  400

Query  361  ACTCACACTTTTTGGTTTCTACTTCTTGCTTGCCTTCGTTGGAGCTACAATTCCTGCTGG  420
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  401  ACTCACACTTTTCGGTTTCTACTTCTTGCTTGCCTTCGTTGGAGCTACAATTCCAGCTGG  460

Query  421  GATTTATGCTAAGGTACATTATGGAACATCGTTGTCGAATGTTGATTGGTTACATGGAGG  480
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  461  GATTTATGCTAAGGTGCATTATGGAACATCGTTGTCGAATGTTGATTGGTTACACGGAGG  520

Query  481  AGCTGAATCACTTCTTGCTCTTACCAATTTGTTTATCGTGTTGGGTCTTAGACAAGCTTT  540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  521  AGCTGAATCACTTCTTGCTCTTACCAATTTGTTTATCGTGTTGGGTCTTAGACAAGCTCT  580

Query  541  GAGAAAGTCTCAAGATGATGATGAT-A-AA-CTTGGTAATGATGATGAAGCTTC-AACAA  596
            ||| ||||||||||||||||||||| | || ||||||||||||||||||| ||| |||||
Sbjct  581  GAGGAAGTCTCAAGATGATGATGATGATAAACTTGGTAATGATGATGAAG-TTCCAACAA  639

Query  597  CTCAAGAACAAGAGAAATCTTCAGTCTAGTAAAACAAATGTAAATT  642
            |||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct  640  CTCAAGAACAAGGGAAATCTTCAGTGTAGTAAAACAAATGTAAATT  685


 Score =  174 bits (94),  Expect = 1e-42
 Identities = 122/134 (91%), Gaps = 7/134 (5%)
 Strand=Plus/Plus

Query  642  TGAGTTCAACGCTAGTTTAGATGCGTTTGGTTCTTATTTGGt-ttttt-ttCTTAATATG  699
            ||||||||||||||| ||||||| |||| ||||||||||||| ||||| | |||||||||
Sbjct  764  TGAGTTCAACGCTAG-TTAGATGTGTTTTGTTCTTATTTGGTCTTTTTCTCCTTAATATG  822

Query  700  CTAAAGTAACATTTTGTGGAGGTATAAATCCGATTGAGAA-TGGCATTGAGTAGTTACTA  758
            |||||||| ||||||||||||||||||||||||||||||| |||||||   |||||||||
Sbjct  823  CTAAAGTATCATTTTGTGGAGGTATAAATCCGATTGAGAAATGGCATT---TAGTTACTA  879

Query  759  TTGGAATCTTGTTC  772
            ||||||| ||||||
Sbjct  880  TTGGAATATTGTTC  893



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37524907809


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5