BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474917
Length=1091
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64350.1 | Symbols: SEH1H | Transducin/WD40 repeat-like supe... 1700 0.0
> AT1G64350.1 | Symbols: SEH1H | Transducin/WD40 repeat-like superfamily
protein | chr1:23881512-23883297 FORWARD LENGTH=1275
Length=1275
Score = 1700 bits (920), Expect = 0.0
Identities = 1036/1093 (95%), Gaps = 4/1093 (0%)
Strand=Plus/Plus
Query 1 GAAAATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 GAAAATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCA 126
Query 61 CTCCGGCCCCCGATTAGCCACCGGATCCCTCGACGG-AAGCTTCTCCGTATACGACTCCT 119
|||||| ||| |||||| ||||||| ||| |||| || ||| || ||||||| ||||
Sbjct 127 ATCCGGCGACCGTTTAGCCGCCGGATCTCTCAACGGAAAACTT-TCTATATACGAATCCT 185
Query 120 CTACTCCGTCTTCTTCGACTTTCACTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTA 179
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 186 CTACTTCGTCTTCTTCGACTTTCAGTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTA 245
Query 180 TCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCATTTGCGAAG 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 246 TCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCGTTTGCGAAG 305
Query 240 ATGGGAGCTTATCAACTTGGGAGGAGCTCTCTGAAGACACACATGCTCTTGAGTGGAAAT 299
| ||||||||||| | |||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 306 ACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGACGCACATGGTCTTGAATGGAAAT 365
Query 300 TGTGTAAGAGTATAAAGAACAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCA 359
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCA 425
Query 360 GAAAGAGTCTTAAGATGGTTGCAGCATATTCTGATGGTTACCTTAGGGTTTTTGAGCTGT 419
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 426 GAAAGAGTCTAAAGATGGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCT 485
Query 420 TGAATCCTTTGGAACTAAAGAATTGGCAACTTCAGGCCGAGTTTCAGAATGTGATCGATT 479
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 486 TGAATCCATTGGAGCTAAAGAATTGGCAACTTCAGGCTGAGTTTCAGAATGTTATCGATT 545
Query 480 CTCTATCGATGCTCGGTAAACCTTCAAGCTTATCTGCATCTGTTTCTTGGAATCCGATGA 539
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 546 CTCTATCGACGCTCGGTAAACCTTCAAGCTTATCTGCTTCTGTTTCTTGGAATCCGATGA 605
Query 540 AAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTA 665
Query 600 ACTCTTCCAAGATATGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAAC 659
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 ACTCTTCCAAGATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAAT 725
Query 660 TAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCAAATATTG 719
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 726 TAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTG 785
Query 720 GCCGACCATACGAGGTTGTTGCTGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTG 779
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 786 GCCGACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTG 845
Query 780 GTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 GTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCC 905
Query 840 ATCAAGGCGAGGTTTGGCAGATGGAATGGGACATGAGTGGTATGACTTTAGCTAGCACTG 899
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 906 ATCAAGGCGAGGTTTGGCAAATGGAATGGGACATGAGTGGCATGACTTTAGCTAGCACTG 965
Query 900 GAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCACGAGCAGG 959
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 966 GAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCATGAGCAGG 1025
Query 960 CCACGCTTGAACCAGTTCCCTCCTAGGTCCC-CATCACCCCTATGTCCAAAAACATTTTG 1018
||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||| ||
Sbjct 1026 CCACGCTTGAACCAGTTCCCTCCTAAGTCCCGCATCACCGTTTTGTCCAAAAACATGTTC 1085
Query 1019 GTTTCATTTCCCGGACATTATTTGATAGTGTTGCCCAGTTTTGTTTCTGACTTTAAAGAC 1078
||| |||||||| ||| ||||||| ||| |||| |||||||||||| ||||||||||||
Sbjct 1086 GTTCCATTTCCCACACACTATTTGACAGTATTGCTCAGTTTTGTTTC-GACTTTAAAGAC 1144
Query 1079 TAGTCTATAAGTT 1091
||||||| |||||
Sbjct 1145 TAGTCTACAAGTT 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53463580425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5