BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474924
Length=2258
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64280.1 | Symbols: NPR1, SAI1, NIM1, ATNPR1 | regulatory pr... 2970 0.0
> AT1G64280.1 | Symbols: NPR1, SAI1, NIM1, ATNPR1 | regulatory
protein (NPR1) | chr1:23852748-23855566 REVERSE LENGTH=2522
Length=2522
Score = 2970 bits (1608), Expect = 0.0
Identities = 2094/2318 (90%), Gaps = 75/2318 (3%)
Strand=Plus/Plus
Query 1 GATGCTTCTTCATATCTCACCACCACTCTCGTTGACTTGACTTGGCTCTTCTCGTCAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 GATGCTTCTTCATATCTCACCACCACTCTCGTTGACTTGACTTGGCTCTGCTCGTCAATG 60
Query 61 GTTCTCTGCGATC-TTAGCCAAAT-CTGTTGATAAGGTTTCTTCGTTGATTGGTAGAGAT 118
||| ||| ||||| ||| |||||| | ||||||||||| |||||||||||| | ||||||
Sbjct 61 GTTATCTTCGATCTTTAACCAAATCCAGTTGATAAGGTCTCTTCGTTGATTAGCAGAGAT 120
Query 119 CTC-GAAATTTGTCAAATTCAATTCATCGGAACCTGTTGATGG--A-CACCATTGATGGA 174
||| ||||||| || |||||||||||||||||||||||||| | |||||||||||||
Sbjct 121 CTCTTTAATTTGTGAATTTCAATTCATCGGAACCTGTTGATGGACACCACCATTGATGGA 180
Query 175 TTCGCCGATTCTTATGACATCAGCGGCACTACTTTCTTCGCTACCGATAATACAGAGTCT 234
||||||||||||||||| |||||| |||||| |||| ||||||||||||| || || ||
Sbjct 181 TTCGCCGATTCTTATGAAATCAGCAGCACTAGTTTCGTCGCTACCGATAACACCGACTCC 240
Query 235 TCTATTGTTTTTCCGGCGGCAGGCGAACAACTTCCCAGCGGACCTGATGTATCTGCTCTG 294
|||||||||| || ||| | | ||||||| | | || ||||||||||||||||||||||
Sbjct 241 TCTATTGTTTATCTGGC--C-GCCGAACAAGTACTCACCGGACCTGATGTATCTGCTCTG 297
Query 295 CAATTGCTCTCCAACAGCTTCGAATCCGTGTTTGACAAGCCGGAAGAGTTCTACAGCGAC 354
||||||||||||||||||||||||||||| |||||| |||||| || ||||||||||||
Sbjct 298 CAATTGCTCTCCAACAGCTTCGAATCCGTCTTTGACTCGCCGGATGATTTCTACAGCGAC 357
Query 355 GCTAAGCTTGTTCTCTCCGACGGCCGGGAAGTATCTTTCCACCGCTGCGTTTTGTCAGCA 414
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 358 GCTAAGCTTGTTCTCTCCGACGGCCGGGAAGTTTCTTTCCACCGGTGCGTTTTGTCAGCG 417
Query 415 AGAAGCTCCTTCTTCAAGAACGCTTTAGCCGCCGCTAAGAAGGAGAAAGACT-C--CAAC 471
|||||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||
Sbjct 418 AGAAGCTCTTTCTTCAAGAGCGCTTTAGCCGCCGCTAAGAAGGAGAAAGACTCCAACAAC 477
Query 472 A---CCGCCGTGAAGCTCGAGCTGAAGGAGATTGCTAAGGATTACGAAGTCGGTTTCGAT 528
| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 478 ACCGCCGCCGTGAAGCTCGAGCTTAAGGAGATTGCCAAGGATTACGAAGTCGGTTTCGAT 537
Query 529 TCGGTTGTGGCTGTTTTGGCTTATGTTTACAGCAGCAGAGTGAGGCCGCCGCCTAAAGGA 588
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 TCGGTTGTGACTGTTTTGGCTTATGTTTACAGCAGCAGAGTGAGACCGCCGCCTAAAGGA 597
Query 589 GTTTCCGAATGCGCAGACGAGAATTGCCACCACGAGGCTTGCCGGCCGGCGGTGGATTTC 648
||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 598 GTTTCTGAATGCGCAGACGAGAATTGCTGCCACGTGGCTTGCCGGCCGGCGGTGGATTTC 657
Query 649 ATGTTGGAGGTTCTCTATTTGGCCTTCATCTTCAGGATCCCGGAATTAGTTACTCTGTAT 708
||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||| |||
Sbjct 658 ATGTTGGAGGTTCTCTATTTGGCTTTCATCTTCAAGATCCCTGAATTAATTACTCTCTAT 717
Query 709 CAGAGGC-CTTTATTGGATGTTGTAGACAAAGTTGTTATAGAGGACACATTGGTTATACT 767
||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAGAGGCAC-TTATTGGACGTTGTAGACAAAGTTGTTATAGAGGACACATTGGTTATACT 776
Query 768 CAAGCTTGCTAATATATGTGGTGAAGCTTGTAAGAAACTATTGGATAGATGCAAAGAGAT 827
|||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||
Sbjct 777 CAAGCTTGCTAATATATGTGGTAAAGCTTGTATGAAGCTATTGGATAGATGTAAAGAGAT 836
Query 828 TATTGTCCTGTCTAATGTAGATA-GAGTCAGTATTGAGAAGTCATTGCCGCCAGAGCTT- 885
||||||| |||||||||||||| | || ||| |||| |||||||||||| |||||||
Sbjct 837 TATTGTCAAGTCTAATGTAGATATG-GTTAGTCTTGAAAAGTCATTGCCGGAAGAGCTTG 895
Query 886 TTCAAAGAGATAACTGATA-ACCGTAAAGAGCTTGGTTTGGAGGTACCTATACTAGACAA 944
|| |||||||||| ||||| || ||||||||||||||||||||||||||| | || | ||
Sbjct 896 TT-AAAGAGATAATTGATAGAC-GTAAAGAGCTTGGTTTGGAGGTACCTAAAGTAAAGAA 953
Query 945 ACATGTCTCTAATATACATAAGGCACTTGACTCGGATGATGTCGAGTTAGTGAAGCATT- 1003
||||||||| ||| |||||||||||||||||||||||||| | |||||||| ||| ||
Sbjct 954 ACATGTCTCGAATGTACATAAGGCACTTGACTCGGATGATATTGAGTTAGTCAAG--TTG 1011
Query 1004 -TTTTGACAGAAGGC-CACACCAATCTAGATGATGCGTGTGCTCTTCATTTCGCTGTTGC 1061
|||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CTTTTGAAAGA-GGATCACACCAATCTAGATGATGCGTGTGCTCTTCATTTCGCTGTTGC 1070
Query 1062 ATATTGCGATGTGAAGACCGCAACAGATCTCCTAAAACTGGATCTTGCCGATGTCAACCA 1121
||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1071 ATATTGCAATGTGAAGACCGCAACAGATCTTTTAAAACTTGATCTTGCCGATGTCAACCA 1130
Query 1122 TAGAAATCCGAGGGGATACACGGTGCTTCATGTCGCTGCGATGCGCAAGGAGCCACAATT 1181
||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1131 TAGGAATCCGAGGGGATATACGGTGCTTCATGTTGCTGCGATGCGGAAGGAGCCACAATT 1190
Query 1182 GATACTATCTCTATTGGAAAAAGGTGCAAGTGCATCAGA-GAAAACGTTGGAAGGTAGAA 1240
||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 1191 GATACTATCTCTATTGGAAAAAGGTGCAAGTGCATCAGAAGCAA-CTTTGGAAGGTAGAA 1249
Query 1241 CTGCTCTCTTGATCGCAAAACGAGTCACTATGGCGGTCGAATATAATAATGTTCCGGAAC 1300
| || ||| |||||||||||| || |||||||||||| |||| ||||||| | ||||| |
Sbjct 1250 CCGCACTCATGATCGCAAAACAAGCCACTATGGCGGTTGAATGTAATAATATCCCGGAGC 1309
Query 1301 GATTCAAGCATTCACTCAAAGGCCGACTATGCGTAGAAATACTAGAGCAAGGAGACAAAC 1360
|| ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1310 AATGCAAGCATTCTCTCAAAGGCCGACTATGTGTAGAAATACTAGAGCAAGAAGACAAAC 1369
Query 1361 GAGAACCAATTCCTAGAGATGTTCCTCCCTCTTTTGCAGTGGCTGCTGATGAATTGAAGA 1420
|||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1370 GAGAACAAATTCCTAGAGATGTTCCTCCCTCTTTTGCAGTGGCGGCCGATGAATTGAAGA 1429
Query 1421 TGAGGCTGCTCGATCTTGAGAATAGAGTTGCACTAGCTCAACGT-TTGTTTCCAACGGAA 1479
||| ||||||||||||||| |||||||||||||| ||||||||| || ||||||||||||
Sbjct 1430 TGACGCTGCTCGATCTTGAAAATAGAGTTGCACTTGCTCAACGTCTT-TTTCCAACGGAA 1488
Query 1480 GCACAAGTTGCAATGGAGATCGCAC-AAATGAAGGGAACATGTGAGTTCATAGTGACTAG 1538
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1489 GCACAAGCTGCAATGGAGATCGC-CGAAATGAAGGGAACATGTGAGTTCATAGTGACTAG 1547
Query 1539 CCTAGAGCCTGACCGTCTCACTGGTACAAAGAGAACATCACCGGACGTAAAGATAGCACC 1598
||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1548 CCTCGAGCCTGACCGTCTCACTGGTACGAAGAGAACATCACCGGGTGTAAAGATAGCACC 1607
Query 1599 TTTCAAAATCCTAGAAGAGCATCAAAGTAGACTAAGAGCGCTTTCTAAAACCGTGGAACT 1658
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1608 TTTCAGAATCCTAGAAGAGCATCAAAGTAGACTAAAAGCGCTTTCTAAAACCGTGGAACT 1667
Query 1659 CGGGAAACGCTTTTTCCCGCGCTGTTCAGCAGTGCTCGACCAGATTATGGACTGTGAGGA 1718
||||||||| || |||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1668 CGGGAAACGATTCTTCCCGCGCTGTTCGGCAGTGCTCGACCAGATTATGAACTGTGAGGA 1727
Query 1719 CTTGACTCAACTGGCTTGCGGAGAAGAAGACACTCCTGAGAAACGACTACAAAAGAAGCA 1778
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1728 CTTGACTCAACTGGCTTGCGGAGAAGACGACACTGCTGAGAAACGACTACAAAAGAAGCA 1787
Query 1779 AAGGTACATGGAAATACAAGAGATATTAACA-AAGGCCTTTACTGAGGACAATTTGGAAT 1837
||||||||||||||||||||||| | ||| | |||||||||| |||||||||||||||||
Sbjct 1788 AAGGTACATGGAAATACAAGAGACACTAA-AGAAGGCCTTTAGTGAGGACAATTTGGAAT 1846
Query 1838 TTGGAAAATCGTCCCTCACAGCTTCGTCTTGTTCCACAACGAAATCAACTGGTGGAAAGA 1897
| ||||| |||||||| |||| |||| ||| ||||||| |||||||||| ||||||||||
Sbjct 1847 TAGGAAATTCGTCCCTGACAGATTCGACTTCTTCCACATCGAAATCAACCGGTGGAAAGA 1906
Query 1898 GGTCTAACCGTAAACTCTCTCATCGACGTCGGTGAGACGCTTGCCTCTTAGTGTAATTTT 1957
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1907 GGTCTAACCGTAAACTCTCTCATCGTCGTCGGTGAGACTCTTGCCTCTTAGTGTAATTTT 1966
Query 1958 TGTTGTACCATATAATTCTGTTTTCATGATGATTGTCACTGTTTATGTCTATCGTTGGCG 2017
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1967 TGCTGTACCATATAATTCTGTTTTCATGATGACTGTAACTGTTTATGTCTATCGTTGGCG 2026
Query 2018 TCATATAGTTTCGTTCTTCATTTTGCATCCTGTGTTTTATCGCTGCAGGTGTGTTTCAAA 2077
||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| ||||||
Sbjct 2027 TCATATAGTTTCGCTCTTCGTTTTGCATCCTGTGTATTATTGCTGCAGGTGTGCTTCAAA 2086
Query 2078 CAAATGTTGTAACATTTTGAACCAGCGGTATACA-A-----A-T-T-T------GTA-AT 2121
|||||||||||||| ||||||||| |||||||| | | | | | ||| ||
Sbjct 2087 CAAATGTTGTAACAATTTGAACCAATGGTATACAGATTTGTAATATATATTTATGTACAT 2146
Query 2122 -A----TAACCCATGATGGTGTTACAGAGTTGGCTAGAATCAAAGTGTGAAATAAAGACA 2176
| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 2147 CAACAATAACCCATGATGGTGTTACAGAGTTG-CTAGAATCAAAGTGTGAAATAATGTCA 2205
Query 2177 AATTGTTCATCT-----AT-T----------GAACCAAAAGAAGATTCAAGTTCCCTTAA 2220
|||||||||||| || | |||||||||||| ||||||||||||| ||
Sbjct 2206 AATTGTTCATCTGTTGGATATTTTCCACCAAGAACCAAAAGAATATTCAAGTTCCCTGAA 2265
Query 2221 CTTCTGGCAACATTCATGTTATAAGTATTTTCCTTATT 2258
||||||||||||||||||||||| |||| ||||| |||
Sbjct 2266 CTTCTGGCAACATTCATGTTATATGTATCTTCCTAATT 2303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112047616440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5