BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474925
Length=2168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64270.1 | Symbols: | transposable element gene | chr1:2385... 2636 0.0
AT1G64250.1 | Symbols: | transposable element gene | chr1:2384... 1186 0.0
AT1G64260.1 | Symbols: | MuDR family transposase | chr1:238477... 645 0.0
AT1G64240.1 | Symbols: | transposable element gene | chr1:2383... 627 2e-178
AT1G49920.1 | Symbols: | MuDR family transposase | chr1:184817... 442 7e-123
> AT1G64270.1 | Symbols: | transposable element gene | chr1:23850572-23852785
FORWARD LENGTH=2214
Length=2214
Score = 2636 bits (1427), Expect = 0.0
Identities = 1781/1950 (91%), Gaps = 32/1950 (2%)
Strand=Plus/Plus
Query 234 ttATGAGTTTAGCCCCAAAA-AGTTCACATGTTTCTTTGAATTCACTGCAGGAACTGTTG 292
|||||||||||| |||||| || |||| |||||| |||||||||||||| ||||||
Sbjct 280 TTATGAGTTTAG-GCCAAAATTTTTTACATTTTTCTTAGAATTCACTGCAGG-ACTGTTA 337
Query 293 TGCTCATGGCGATAGAAACCTTGAGAGAAAGGTTCTATCAAGTATGGTCCTGATGGTGTA 352
|| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 338 TGGTCATGGCGATGGAAACCTTGAGAGAAAGGTTCTACCAAGTATGGTCCTGATGGTGTT 397
Query 353 TACTATGAAGGATCCACTCCTAAAAAGATC-AGAGTTAGGAAAAAGACTGCGTTAAGCAC 411
||||||||||||||||||||||||| | || || |||||| |||||||||||||||| ||
Sbjct 398 TACTATGAAGGATCCACTCCTAAAACGGTCAAG-GTTAGGCAAAAGACTGCGTTAAGTAC 456
Query 412 ATTGTTGAATGGGCTTTATCCAATTTTTGGATT--AGCTAAGCAGAAATCAGAGTTCAAA 469
|||||||||||| |||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 457 ATTGTTGAATGGTCTTTATCCAATTTTTGGATTGCAGCT--GCAGAAATCAGTGTTCAAT 514
Query 470 ATA-TTTGGTAGGTACCCTGTAGTTGTTTCACCGGATCTCTTTATGTATCTACTTCTTCC 528
||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 515 ATATTTTGGTAGGTATCCTGTAGTTGTTTCACCGGATCTCTTTATCTATCTACTTCTTCA 574
Query 529 TGTGGTGAACGACACTAGTTTGGATACTATGCTTGAGGTTCCAAGCATA-CATCCTTCTA 587
||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||
Sbjct 575 TGTAGTGAACGACACTAGTTTGGAGACTATGCTTGAAGTTCCAAG-TTATCATCCTTCTA 633
Query 588 TAAAG-AATGTGGAGTTGTATTTGGAAGTGAAATCGACTTCTGATGATGTTGCTGATCCT 646
| ||| |||||||||||||||||||||||||||||||| |||||| ||||| |||||| |
Sbjct 634 T-AAGAAATGTGGAGTTGTATTTGGAAGTGAAATCGACATCTGATAATGTTACTGATCAT 692
Query 647 GCTGCTTGTTCATCAGTATTGGAAAATCCTGCTAGTTCCTCGAAAAGACAGAGGACCCAG 706
|||||||||||||| ||| | ||| |||| |||||||||||||| | ||||||||| ||
Sbjct 693 GCTGCTTGTTCATCCGTAATAGAATATCCCGCTAGTTCCTCGAATACACAGAGGACGCAA 752
Query 707 CAACCCCATGAAGCTACTGGTTATGTGTCACATCCATCTGTTAAAGTAGAGAGGGATAAT 766
|||||||| |||||||||| ||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 753 CAACCCCAAGAAGCTACTGATTATGTGTCACATGCATCTGTGAAAGTAGAGAGAGATAAT 812
Query 767 GGTTTAGAGATTCAGGGAGTGGGTAATAGTAACGGGTGGATTGAAGACGAGGAACATTCT 826
||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 813 GGTTTAGAGGTTCAGGGAGTGGGTAACAGTAACGGGTGGATTGAAGACGAGGAAAATTCT 872
Query 827 GACTTTGGAAATGGTAGCACTCATGGAGGTGGAGATGGAGAAATGACGGATAAAAACTCG 886
||||| |||||||||||||||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 873 GACTTCGGAAATGGTAGCACTCGTGGAGGTGGGGATGGAGAAATAACGGATAAAAACTCG 932
Query 887 GGTTCAGATGATGTACAGAAGGATTTGAATGTGCCAGGCTTAGAAGCATCAGCGAATCCA 946
||||||||||||| ||| |||| ||||||||||||||||||||| | || | || || |
Sbjct 933 GGTTCAGATGATGCACACAAGG-TTTGAATGTGCCAGGCTTAGAGGTATTACCGTATGCG 991
Query 947 TGCTTATTAAATAAAGGTGTCGTCGATTCGAGTGCTTCAAAACCGTGGT-CGCTGTCCAG 1005
|||||||||| ||||||||| || ||||||||||||||||||| || || | |||| ||
Sbjct 992 TGCTTATTAAGTAAAGGTGTTGTTGATTCGAGTGCTTCAAAACAGT-GTACTTTGTCTAG 1050
Query 1006 TTTGTGGGTTGATGATCATGAATTGCGTGTAGGGTTGTGTTTTAAAGATAGAGATGAGCT 1065
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1051 TTTGTGGATTGATGATCATGAATTGCGTGTAGGGTTGTGTTTTAAAGATAGGGATGAGCT 1110
Query 1066 GAAGAAGGCGGTGGACTGGTGTTCCATTAGAGGGCAGCAAAAGTGTGTAGTAAAAGAGAT 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1111 GAAGAAGGCGGTGGACTGGTGTTCCATTAGAGGGCAGCAAAAGTGTGTAGTACAAGAGAT 1170
Query 1126 TGAGAAGGATGAGTATATC-TTTAAATGCATCAGATGGAAATGCAATTGGTCACTTCGGG 1184
||||||||| ||||||| | |||||||||||||||||||||||||||||||| | |||||
Sbjct 1171 TGAGAAGGACGAGTATA-CGTTTAAATGCATCAGATGGAAATGCAATTGGTCGCGTCGGG 1229
Query 1185 CAGCTAGAATAGAAGAACATGGACTCGTTGAGATAACCAAGTGTAGT-GGTCCACATACT 1243
||| | ||||||||||||||||||| ||| ||||||| ||||||||| ||||||||||||
Sbjct 1230 CAGATTGAATAGAAGAACATGGACTTGTTAAGATAACTAAGTGTAGTTGGTCCACATACT 1289
Query 1244 TGTTGTTCTATTAAGCCAGAAAATTTCAACGTGGAATTTGCAGCAGAAGAGATTGAATGT 1303
||||||||||||||||| ||||| |||||| || |||||||||||||||||||||| |||
Sbjct 1290 TGTTGTTCTATTAAGCCGGAAAACTTCAACTTGTAATTTGCAGCAGAAGAGATTGAGTGT 1349
Query 1304 TTGATCAGGGTACAACCTACACTAACAATTGTAGAGTTGAAAAATTTGGCGACATGCTTA 1363
|||||||||||||||| || |||||| | ||||||||||| ||||| ||||||||||
Sbjct 1350 CTGATCAGGGTACAACCCACTCTAACA---GCAGAGTTGAAAAGTTTGGTGACATGCTTA 1406
Query 1364 AAACTTCAGAGCTGCGGGCAGCAAAACAGGAAGTAATCAAAGATCAGAGTTTCAGAGTAT 1423
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1407 AAACTTCAAAGCTGCGGGCAGCAGAACAGGAAGTAATCAAAGATCAGAGTTTCAGAGTAT 1466
Query 1424 TGCCTAAATTAAT-GGCTGCGTTTCACTCATCTAATGGGCTACTAGTTGACTGGCAATAT 1482
|||||||| |||| |||||| ||||||||||||||||||||||| || ||||| ||||||
Sbjct 1467 TGCCTAAACTAATTGGCTGCATTTCACTCATCTAATGGGCTACTTGTGGACTG-CAATAT 1525
Query 1483 GAGCTTTTTCCTAATCCTGAATTTGCATCCTTTGGTGGCGTGTTTTGGGCGTTTCCACAG 1542
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1526 GAGCTTTTCCCTAATCCTGAATTTGCATCCTTCGGTGGCGCGTTTTGGGCGTTTCCACAG 1585
Query 1543 TCCATTGATGGGTTTCGACACTGTAGACCTCTAATCATAGTGGACACCAAAGACTTGAAC 1602
|||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1586 TCCATTGAAGGGTTTCAACACTGTAGACCTCTGATCATAGTGGATTCAAAAGACTTGAAC 1645
Query 1603 GGTAAGTACCCTATGAAATTGATGATTGCCTCAGGAGTCGAAGCTGATGATTGCTTTTTC 1662
|| |||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||
Sbjct 1646 GGCAAGTACCCTATGAAATTGATGATTTCCTCAGGACTCGACGCTGATGATTGCTTTTTC 1705
Query 1663 CCGCTTGCATTTGCGCTTACCAAAGAAGTGTCCACTGATAGTTGGCGTTGGTTTCTTGCT 1722
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1706 CCGCTTGCCTTTCCGCTTACCAAAGAAGTGTCCACTGATAGTTGGCGTTGGTTTCTCACT 1765
Query 1723 GGA-ATCCGAGAGAAGGTAACACAAAGGAAAGACGTTTGCCTCATCTCCAGTCCCCACCC 1781
| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1766 A-ATATCAGAGAGAAGGTAACACAAAGGAAAGACGTTTGCCTCGTCTCCAGTCCTCACCC 1824
Query 1782 GGACATAGTTGCTGTTATTAACGAACCCGGGTCACTGTGGCAAGAACCCTGGGTTTATCA 1841
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 1825 GGACATAGTTGCTGTTATTAACGAACCCGGATCACTGTGGCAAGAACCTTGGGTCTATCA 1884
Query 1842 CAGGTTCTGTCTGGATCGTTTTTGCTTAAAATTCCATGATATTTTTCAAGACTACAACCT 1901
|||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1885 CAGGTTCTGTCTGGATTGTTTTTGCTTACAATTCCATGATATTTTTGGAGACTACAACCT 1944
Query 1902 AGTGAGCCTTGTGAAGCAGGCTGGATCCACGAGTCAGAAGGAAGAATTTGATTCCTACAT 1961
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1945 GGTGAGCCTTGTGAAGCAGGCTGGATCCACAAGTCAGAAGGAAGAATTTGATTCCTACAT 2004
Query 1962 GAAGGACATTGAAAAGAAG-AGCTCAGAAGCTTGGAAATGGTTAGACCAATTCCCTCAAA 2020
|||||||| |||||||| | |||||||||| |||||||||||| ||||||||||||||
Sbjct 2005 AAAGGACATCAAAAAGAAGGA-CTCAGAAGCTCGGAAATGGTTAGCCCAATTCCCTCAAA 2063
Query 2021 CTCAGTGGGCTCTGGCTCATGAC-AGTAGTCGGAGAT-TCGGAGTCATGACGATAGAAAC 2078
|||||||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||
Sbjct 2064 ATCAGTGGGCTCTGGCTCATGACCAGTGGTCGGAGATAT-GGAGTCATGACGATAGAAAC 2122
Query 2079 AGAAGATTTGTTTGCAATTTGTGAAAGCTTTCAGTCTCTTGGTCTGTCAGTGACAGCAAA 2138
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 2123 AGAAGATTTGAGGGCAATTTGTGAAAGCTTTCAGTCTCTTGGTCTATCAGTGACAGCGAA 2182
Query 2139 CGCACCTGCACGTGTGGGAAGTTTCAATCG 2168
||||||||||| ||||||||||||||||||
Sbjct 2183 CGCACCTGCACATGTGGGAAGTTTCAATCG 2212
> AT1G64250.1 | Symbols: | transposable element gene | chr1:23840888-23843251
FORWARD LENGTH=2364
Length=2364
Score = 1186 bits (642), Expect = 0.0
Identities = 1030/1210 (85%), Gaps = 55/1210 (5%)
Strand=Plus/Plus
Query 970 CGATTCGAGTGCTTCAAAACCGTGGTCGCTGTCCAGTTTGTGGGTTGATGATCATGAATT 1029
||| || ||| |||| ||| | ||| | ||||||||||||||||||||||||||||||||
Sbjct 654 CGAGTCAAGTACTTC-AAATCATGGCCTCTGTCCAGTTTGTGGGTTGATGATCATGAATT 712
Query 1030 GCGTGTAGGGTTGTGTTTTAAAGATAGAGATGAGCTGAAGAAGGCGGTGGACTGGTGTTC 1089
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||
Sbjct 713 GCGTGTAGGGTTGTGTTTTAAAGACAGGGATGAGCTGAAGAAGACGGTGGACTGGTGCTC 772
Query 1090 CATTAGAGGGCAGCAAAAGTGTGTAGTAAAAGAGATTGAGAAGGATGAGTATATC-TTTA 1148
|||||||||| ||||||||||||||||| ||||| |||||||| |||||| | |||
Sbjct 773 TATTAGAGGGCGGCAAAAGTGTGTAGTAAGAGAGACCGAGAAGGACAAGTATA-CGTTTG 831
Query 1149 AATGCATCAGATGGAAATGCAATTGGTCACTTCGGGCAGCTAGAATAGAAGAACATGGAC 1208
|||||||||||||||||||||| ||||| |||| |||||||||||| ||||| || ||||
Sbjct 832 AATGCATCAGATGGAAATGCAAGTGGTCGCTTCAGGCAGCTAGAATTGAAGAGCACGGAC 891
Query 1209 TCGTTGAGATAACCAAGTGTAGTGGTCCACATACTTGTTGTTCTATTA-AGCCAGAAAAT 1267
| ||||||||||||||||||| | |||||||||||||||| ||| || |||||| |||
Sbjct 892 TTGTTGAGATAACCAAGTGTAATACTCCACATACTTGTTGTCCTA-TAGGGCCAGATAAT 950
Query 1268 T-TCAACGTGGAATTTGCAGCAGAAGAGATTGAATGTTTGATCAGGGTACAACCTACACT 1326
| | |||||||||| |||||||| |||||||||||| ||||||||||||| || |||||
Sbjct 951 TAT-GACGTGGAATTCGCAGCAGATGAGATTGAATGTCTGATCAGGGTACAGCCCACACT 1009
Query 1327 AACAATT-----G-T-AG--A------G-TTGAAAAATTTGGCGACATGCTTAAAACTTC 1370
||||||| | | || | | ||||||| ||||||||||||||| ||||||
Sbjct 1010 AACAATTGAAGAGTTGAGAAATTGGTGGTTTGAAAATTTTGGCGACATGCTTGCAACTTC 1069
Query 1371 AGAGCTGCGGGCAGCAAAACAGGAA--G-T-----AA-TC-----A-A---AGATCAGAG 1412
|||| ||| ||||||||||| ||| | | || || | | ||||||||
Sbjct 1070 AGAGATGCAAGCAGCAAAACAAGAAGTGATCAAAAAAGTCTTTGGAGATTGGGATCAGAG 1129
Query 1413 TTTCAGAGTATTGCCTAAAT-TAATGGCTGCGTTTCACTCATCTAATGGGCTACTAGTTG 1471
||| |||||||| || ||| |||||||||||||||||||||||||||||||| | || |
Sbjct 1130 TTTTAGAGTATTACC-CAATCTAATGGCTGCGTTTCACTCATCTAATGGGCTAGTTGTGG 1188
Query 1472 ACTGGCAATATGAGCTTTTTCCTAATCCTGAATTTGCATCCTTTGGTGGCGTGTTTTGGG 1531
|||||||||| |||||||||| |||||||||||||| |||||| || | ||||||||||
Sbjct 1189 ACTGGCAATACAAGCTTTTTCCAAATCCTGAATTTGCTTCCTTTCGTAGTGTGTTTTGGG 1248
Query 1532 CGTTTCCACAGTCCATTGATGGGTTTCGACACTGTAGACCTCTAATCATAGTGGACACCA 1591
||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||
Sbjct 1249 CGTTTCCACAGTCCATTGAAGGGTTTCAACACTGTAGACCTCTGATCGTAGTGGACACCA 1308
Query 1592 AAGACTTGAACGGTAAGTACCCTATGAAATTGATGATTGCCTCAGGAGTCGAAGCTGATG 1651
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1309 AAGACTTGAAGGGTAAGTACCCTATGAAATTGATGATTGCCTCAGGAGTCGAAGCTGACG 1368
Query 1652 ATTGCTTTTTCCCGCTTGCATTTGCGCTTACCAAAGAAGTGTCCACTGATAGTTGGCGTT 1711
|||||| |||||| |||||||||||| |||||| |||||| ||| | |||| |||||||
Sbjct 1369 ATTGCTATTTCCCACTTGCATTTGCGTTTACCACAGAAGTATCCTCAGATACCTGGCGTT 1428
Query 1712 GGTTTCTT-GCTGGAATCCGAGAGAAGGTAACACAAAGGAAAGACGTTTGCCTCATCTCC 1770
||||||| | ||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 1429 GGTTTCTCAG-TGGAATCAGGGAGAAGGTAACACAAAGGAAAGACATTTGCCTCATCTCC 1487
Query 1771 AGTCCCCACCCGGACATAGTTGCTGTTATTAACGAACCCGGGTCACTGTGGCAAGAACCC 1830
|| |||||||| || ||| ||| ||||||||||||||| || || | |||||||||||||
Sbjct 1488 AGACCCCACCCTGATATACTTGATGTTATTAACGAACCAGGATCTCAGTGGCAAGAACCC 1547
Query 1831 TGGGTTTATCACAGGTTCTGTCTGGATCGTTTT-TGCTTAAAATTCCA-TGATATTTTTC 1888
|||| |||||||| ||||||||||||| | | | ||| |||| || | || ||||||
Sbjct 1548 TGGGCTTATCACATGTTCTGTCTGGAT-GATATATGCACCCAATTTCACT-ATGTTTTTC 1605
Query 1889 AAGACTACAACCT-AGTGAGCCTTGTGAA-GCAGGCTGGATCCACGAGTCAGAAGGAAGA 1946
||||| || |||| | || ||||||| | | ||||||||||||| ||| ||||||||||
Sbjct 1606 AAGACGACTACCTGAA-GAACCTTGTGTATG-AGGCTGGATCCACAAGTGAGAAGGAAGA 1663
Query 1947 ATTTGATTCCTACATGAAGGACATTGAAAAGAAGAGCTCAGAAGCTTGGAAATGGTTAGA 2006
|||||||||||| ||||| || || |||||||||| ||||||||| |||||||||||||
Sbjct 1664 ATTTGATTCCTATATGAATGAGATCGAAAAGAAGAACTCAGAAGCGCGGAAATGGTTAGA 1723
Query 2007 CCAATTCCCTCAA-ACTCAGTGGGCTCTGGCTCATGACAGTAGTCGGAGATTCGGAGTCA 2065
|||||| |||||| | ||||||||||| |||||||||||| ||||||||| | |||| |
Sbjct 1724 CCAATTTCCTCAATA-TCAGTGGGCTCAAGCTCATGACAGTGGTCGGAGATACAGAGTTA 1782
Query 2066 TGACGATAGAAACAGAAGATTTGTTTGCAATTTGTGAAAGCTTTCAGTCTCTTGGTCTGT 2125
||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1783 TGACGATCGATGCAGAAAATTTGTTTGCATTTTGTGAAAGCTTTCAGTCTCTTGGTTTGC 1842
Query 2126 CAGTGACAGC 2135
||||||||||
Sbjct 1843 CAGTGACAGC 1852
Score = 577 bits (312), Expect = 2e-163
Identities = 495/579 (85%), Gaps = 29/579 (5%)
Strand=Plus/Plus
Query 328 TATCAAGTATGGTCCTGATGGTGTATACTATGAAGGATCCACTCCTAAAAAGATCAGAGT 387
||| ||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 57 TATTAAGTATGGTTCTGATGGCGTATACTATGAAGGATCTAGTCCTAAAAAGATCAGAGT 116
Query 388 TAGGAAAAAGACTGCG-TTAAGCACATTGTTGAATGGGCTTTATCCAATTTTTGGATTAG 446
|| | || |||| | |||| |||| |||||||||||||||||||||||||||||||||
Sbjct 117 TAAGCGCAATACTGAGTTTAA-CACACTGTTGAATGGGCTTTATCCAATTTTTGGATTAG 175
Query 447 CTAAGCAGAA-ATCAGAG-TT-CAAAATATTTGGTAGGTACCCTGTAGTTGTTTCACCGG 503
||||||| || |||| || || ||| | |||||||||||||||| |||| |||||||||
Sbjct 176 CTAAGCA-AAGATCAAAGATTTCAA--TCTTTGGTAGGTACCCTGCAGTTCTTTCACCGG 232
Query 504 ATCTCTTTATGTATCTAC-TTCTTCCTGTGGTGAACGACACTAGTTTGGATACTATGCTT 562
|||| |||| |||| ||| || |||| ||||| |||||| |||||||||| |||||||||
Sbjct 233 ATCTGTTTACGTATTTACATT-TTCCGGTGGTAAACGACTCTAGTTTGGAGACTATGCTT 291
Query 563 GAGGTTCCAAGCA-TACATCCTTCTATAAAGAAT-GTGGAGTTGTATTTGGAAGTGAAAT 620
||||||||||||| | |||||||||| || | | |||||||||||||||||||||||||
Sbjct 292 GAGGTTCCAAGCAATT-ATCCTTCTATTAA-ACTTGTGGAGTTGTATTTGGAAGTGAAAT 349
Query 621 CGACTTCTGATG-ATGTTGCTGATCCTGCTGCTTGTTCATCAGT-ATTGGAAAATCCTGC 678
|||| ||||| | | ||| ||||||||||||||||||||| | ||| ||||||| ||
Sbjct 350 CGACATCTGAAGGA-GTTATTGATCCTGCTGCTTGTTCATC-GCCATTAGAAAATCTTGG 407
Query 679 TAGTTCCTCGAAAAGACAGAGGACCCAGCAACCCCATGAAGCTACTGGTTATGTGTCACA 738
|||||||| |||||||||||||||||| | ||||| |||||||||||| ||||
Sbjct 408 TAGTTCCTTGAAAAGACAGAGGACCCA--A-------GAAGCAACTGGTTATGTGACACA 458
Query 739 TCCATCTGTTAAAGTAGAGAGGGATAATGGTTTAGAGATTCAGGGAGTGGGTAATAGTAA 798
| ||||||||||| ||||||||| |||||||||| || |||||||||||| ||| |||||
Sbjct 459 TTCATCTGTTAAATTAGAGAGGGTTAATGGTTTAAAGGTTCAGGGAGTGGATAACAGTAA 518
Query 799 CGGGTGGATTGAAGACGAGGAACATTCTGACTTTGG-AAATGGTAGCACTCATGGAGGTG 857
|||||||||||||||||||| | || ||| | |||| ||||||||||||||||||| ||
Sbjct 519 CGGGTGGATTGAAGACGAGGCAGATGCTG-CATTGGGAAATGGTAGCACTCATGGATATG 577
Query 858 GAGATGGAGAAATGACGGATAAAAACTCGGGTTCAGATG 896
|||| |||||||||| |||||||||||||||| ||||
Sbjct 578 TAGATAGAGAAATGACAAATAAAAACTCGGGTTCGGATG 616
> AT1G64260.1 | Symbols: | MuDR family transposase | chr1:23847756-23849915
FORWARD LENGTH=2160
Length=2160
Score = 645 bits (349), Expect = 0.0
Identities = 602/721 (83%), Gaps = 30/721 (4%)
Strand=Plus/Plus
Query 1405 GATCAGAGTTTCAGAGT-ATTGCCTAAATTAATGGCTGCGTTTCACTCATCTAATGGGCT 1463
||||| ||||||||||| | |||| || ||||| |||| ||||||||||||||||||||
Sbjct 964 GATCAAAGTTTCAGAGTCA-TGCCCAAGTTAATATCTGCATTTCACTCATCTAATGGGCT 1022
Query 1464 ACTAGTTGACTGGCAATATGAGCTTTTTCCTAATCCTGAATTTGCATCCTTTGGTGGCGT 1523
|| || |||||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1023 TCTCGTGGACTGGCAATATGATCTTTTTCCTAATCCTGATTTTGCATCCTTCCGTGGCGT 1082
Query 1524 GTTTTGGGCGTTTCCACAGTCCATTGATGGGTTTCGACACTGTAGACCTCTAATCATAGT 1583
||||||| | ||| ||||||| || || ||||||| ||||||||||||| | ||| | ||
Sbjct 1083 GTTTTGGTCATTTTCACAGTCTATCGAAGGGTTTCAACACTGTAGACCTTTGATCGTCGT 1142
Query 1584 GGACAC-CAAAGACTTGAACGGTAAGTACCCTA-TGAAATTGATGATTGCCTCAGGAGTC 1641
|||||| |||| |||||||||||||| || | ||||| |||||||||||||||||||
Sbjct 1143 GGACACTAAAAG-TTTGAACGGTAAGTA-CCAATTGAAACTGATGATTGCCTCAGGAGTA 1200
Query 1642 GA---AGCTGATGATTGCTTTTTCCCGCTTGCATTTGCGCTTACCAAAGAAGTGTCCACT 1698
|| ||| | | | |||||||| ||||| |||||| |||| ||||||||||| |||
Sbjct 1201 GATGCAGCCAACAAAT--TTTTTCCC-CTTGCCTTTGCGGTTACTAAAGAAGTGTCTACT 1257
Query 1699 GATAGTTGGCGTTGGTTTCTT-GCTGGAATCCGAGAGAAGGTAACACAAAGGAAAGACGT 1757
|||||||||||||||||| || || |||| |||||||||| || |||||||||||| |
Sbjct 1258 GATAGTTGGCGTTGGTTT-TTCACTAAAATCAGAGAGAAGGTTACGCAAAGGAAAGACCT 1316
Query 1758 TTGCCTCATCTCCAGTCCCCACCCGGACATAGTTGCTGTTATTAACGAACCCGGGTCACT 1817
|||||||||||||||||| | || ||||||||| |||||| |||| ||||| ||||| ||
Sbjct 1317 TTGCCTCATCTCCAGTCCTCTCCGGGACATAGTCGCTGTTGTTAATGAACCAGGGTCTCT 1376
Query 1818 GTGGCAAGAACCCTGGGTTTATCACAGGTTCTGTCTGGATCGTTTTTGCT-TAAAATTCC 1876
|||||||||||| |||| | |||||| |||||||||| ||| ||| ||| | ||||||
Sbjct 1377 GTGGCAAGAACCATGGGCTCATCACAAGTTCTGTCTGAATCATTTGCGCTCT-CAATTCC 1435
Query 1877 ATGATATTTTTCAAGACTACAACCTAGTGAGCCTTGTGAAGCAGGCTGGATCCACGAGTC 1936
|| |||||| |||||||||||| | ||| |||||| |||||||||||||||||| ||
Sbjct 1436 TTGGCGTTTTTCGAGACTACAACCTGGAGAGTCTTGTGGAGCAGGCTGGATCCACGAATC 1495
Query 1937 AGAAGGAAGAATTTGATTCCTACATGAAGGACATTGAAA-AGAAGAGCTCAGAAGCTTGG 1995
|||||||||||||||||||||||||||| ||||| ||| |||||| | |||||||||||
Sbjct 1496 AGAAGGAAGAATTTGATTCCTACATGAATGACATC-AAAGAGAAGAACCCAGAAGCTTGG 1554
Query 1996 AAATGGTTAGACCAATTCCCTCAA-AC-TCAGTGGGC-TCTGGCTCATGACAGTAGTCGG 2052
||||||||||| ||| |||| || || | ||||||| | |||||||||||||| ||| |
Sbjct 1555 AAATGGTTAGATCAAATCCC--AAGACATAAGTGGGCAT-TGGCTCATGACAGTGGTCTG 1611
Query 2053 AGAT-TCGGAGTCAT-GACGATAGAAACAGAAGATTTGTTTGCAATTTGTGAAAG-CTTT 2109
|||| | ||| |||| || |||||| | ||||| | | |||||| ||||| | || ||||
Sbjct 1612 AGATAT-GGAATCATAGA-GATAGATAGAGAAGCTCTATTTGCAGTTTGT-AGAGGCTTT 1668
Query 2110 C 2110
|
Sbjct 1669 C 1669
> AT1G64240.1 | Symbols: | transposable element gene | chr1:23837561-23839897
FORWARD LENGTH=2337
Length=2337
Score = 627 bits (339), Expect = 2e-178
Identities = 581/693 (84%), Gaps = 36/693 (5%)
Strand=Plus/Plus
Query 1405 GATCAGAG-TTT-CAGAGTATTGCCTAAATTAATGGCTGCGTTTCACTCATCTAATGGGC 1462
|||||||| ||| ||| | ||||| || ||||||||||| |||| ||||||||||| |
Sbjct 1075 GATCAGAGTTTTGAAGA-T-TTGCCCAAGTTAATGGCTGCCATTCATTCATCTAATGGAC 1132
Query 1463 TACTAGTTGACTGGCAA-TATGAGCTTTTTCCTAATCCTGAATTTGCATCCTTTGGTGGC 1521
| || || |||||| || ||||| ||||||||||||||| ||||||||||||| ||||
Sbjct 1133 TCCTCGTGGACTGG-AAGTATGATCTTTTTCCTAATCCTAAATTTGCATCCTTCCGTGGT 1191
Query 1522 GTGTTTTGGGCGTTTCCACAGTCCATTGATGGGTTTCGA-CACTGTAGACCTCTAATCAT 1580
||||||||||| ||| ||||||| || || ||| ||| | ||||||||||||||||||||
Sbjct 1192 GTGTTTTGGGCATTTTCACAGTCTATCGAAGGG-TTCCATCACTGTAGACCTCTAATCAT 1250
Query 1581 AGTGGACACCAAAGACTTGAACGGTAAGTACCCTAT-GAAATTGATGATTGCCTCAG-GA 1638
||||||||||||| | |||||| ||||||| || || ||| |||||||| ||||| | |
Sbjct 1251 AGTGGACACCAAAAATTTGAACTGTAAGTA-CCAATGGAAGTTGATGATCGCCTCTGCG- 1308
Query 1639 GTCGA---AGCTGATGATTGCTTTTTCCCGCTTGCATTTGCGCTTACCAAAGAAGTGTCC 1695
|| || ||| || ||| ||||| | |||||| |||||| |||| | |||| | ||
Sbjct 1309 GTTGATGCAGCAGACAATT--TTTTT-CTGCTTGCCTTTGCGTTTACTACAGAACTTTCT 1365
Query 1696 ACTGATAGTTGGCGTTGGTTTCT-TGCTGGAATCCGAGAGAAGGTAACACAAAGGAAAGA 1754
||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||| |
Sbjct 1366 ACTGATAGTTGGCGTTGGTTTCTCT-CTGGAATCAGAGAGAGGGTAACACAAAGGAAGGG 1424
Query 1755 CGTTTGCCTCATCTCCAGTCCCCACCCGGACATAGTTGCTGTTATTAACGAACCCGGGTC 1814
| |||||||||| ||||||||| |||| ||| || ||||||||||||||||| |||| ||
Sbjct 1425 CCTTTGCCTCATTTCCAGTCCCGACCCCGACTTACTTGCTGTTATTAACGAATCCGGATC 1484
Query 1815 ACTGTGGCAAGAACCCTGGGTTTATCACAGGTTCTGTCTGGATCGT-TTTTGCT-T-AAA 1871
| ||||||||||||||||| |||| |||| |||||||| | ||| | |||| | |
Sbjct 1485 TCAGTGGCAAGAACCCTGGGCTTATAACAGATTCTGTCT-G--CGTCATCTGCTCTCTCA 1541
Query 1872 ATTCCA-TGATATTTTTCAAGACTACAACCTAGTGA-G-CCTTGTGAAGCAGGCTGGATC 1928
||| || || ||||||| ||||||| | || | || | |||||||||| |||||||||
Sbjct 1542 ATT-CAGTGGCATTTTTCGAGACTACTATCT-G-GAGGATCTTGTGAAGCGGGCTGGATC 1598
Query 1929 CACGAGTCAGAAGGAAGAATTTGATTCCTACATGAAGGACATTGAAAAGAAGAGCTCAGA 1988
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1599 CACGAGTCAGAAGGAAGAATTTGATTCCTACATGAAGGACATTGAAAAGAAGAACTCAGA 1658
Query 1989 AGCTTGGAAATGGTTAGACCAATTCCCTCAAACTCAGTGGGCTCTGGCTCATGACAGTAG 2048
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1659 AGCTCGGAAATGGTTAGACCAATTCCCTCAAAATCAGTGGGCTCTGGCTCATGACAATGG 1718
Query 2049 TCGGAGAT-TCGGAGTCATG-ACGATAGAAACA 2079
||||||| | ||| ||||| | |||||| |||
Sbjct 1719 GCGGAGATAT-GGAATCATGGA-GATAGAGACA 1749
> AT1G49920.1 | Symbols: | MuDR family transposase | chr1:18481774-18484233
REVERSE LENGTH=2382
Length=2382
Score = 442 bits (239), Expect = 7e-123
Identities = 571/728 (78%), Gaps = 35/728 (5%)
Strand=Plus/Plus
Query 1405 GATCAGAGTTTCAGAGT-ATTGCCTAAATTAATGGCTGCGTTTCACTCATCTAATGGGCT 1463
||||||||||||||| | | | || || |||||| ||| | ||||||| |||||||| ||
Sbjct 970 GATCAGAGTTTCAGACTCA-TACCCAAGTTAATGTCTGTGCTTCACTCTTCTAATGGCCT 1028
Query 1464 ACTAGTTGACTGGCAATATGA-GCTTT--TTCCTAATCCTGAATTTGCATCCTTTGGTGG 1520
|| || |||||||||||||| |||| || | |||||||| || |||||| | ||
Sbjct 1029 TCTTGTAGACTGGCAATATGATTCTTTGACTCATGATCCTGAACACGCCTCCTTTCGCGG 1088
Query 1521 CGTGTTTTGGGCGTTTCCACAGTCCATTGATGGGTTTCGACACTGTAGACCTCTAATCAT 1580
|||||||||| ||| ||||||| || | ||||| | ||| ||||||||||| || |
Sbjct 1089 TTTGTTTTGGGCATTTTCACAGTCTATCCAAGGGTTCCAACATTGTAGACCTCTGATTGT 1148
Query 1581 AGTGGACACCAAAGACTT-GAACGGTAAGTACCCTATGAAATTGATGATTGCCTCAGGAG 1639
|||||||||||| |||| | | ||||| ||| ||||| |||||||||||||| || |
Sbjct 1149 TGTGGACACCAAAAACTTGGGA-GGTAAATACAAAATGAAGTTGATGATTGCCTC-GGCG 1206
Query 1640 -TCGAAGCTGA-TGATTGCT-TTTTCCCGCTTGCATTTGCGCTTACCAAAGAAGTGTCCA 1696
| || || | || | |||| || ||||| |||||| |||| |||||||| ||
Sbjct 1207 TTTGATGC-AACCAATCAATATTTT-CCTCTTGCCTTTGCGGTTACTAAAGAAGTATCTG 1264
Query 1697 CTGATAGTTGGCGTTGGTTTCTTGCTGGAATCCGAGAGAAGGTAACACAAAGGAAAGACG 1756
||||||||||||||||||||| || ||||| |||||||||||||||| ||| ||| |
Sbjct 1265 TTGATAGTTGGCGTTGGTTTCTCACTAGAATCAGAGAGAAGGTAACACAGAGGCAAGGCA 1324
Query 1757 TTTGCCTCATCTCCAGTCCCCACCCGGACATAGTTGCTGTTATTAACGAACCCGGGTCAC 1816
||||||||||||||||||| |||| || ||| | ||||||||||||||||| || || |
Sbjct 1325 TTTGCCTCATCTCCAGTCCTGACCCCGATATACTCGCTGTTATTAACGAACCAGGATCTC 1384
Query 1817 TGTGGCAAGAACCCTGGGTTTATCACAGGTTCTGTCTGGATCGTTTTTGCTTAAAATTCC 1876
|||| |||||||||||| ||||||||||||||||||| ||| | | |||| ||| |
Sbjct 1385 AGTGGAAAGAACCCTGGGCTTATCACAGGTTCTGTCTGTATCATCTGTGCTCCAAA--CT 1442
Query 1877 ATGATA---TTTTTCAAGACTACAAC--CTA-GTG-A--GCCTTGT-GAAGCAGGCTGGA 1926
||| || ||| || || || | || | | || | ||||| || | |||||||
Sbjct 1443 ATG-TAGCGTTTCTCCAGGCTTCGACTACAACATGCATTTTCTTGTGGATG-AGGCTGGG 1500
Query 1927 TCCACGAGTCAGAAGGAAGAATTTGATTCCTACATGAAGGACATTGAAA-AGAAG-AGCT 1984
|| | |||||||||||||| |||||||||||||||||||| | | ||| ||| | | |
Sbjct 1501 TCGTCAAGTCAGAAGGAAGAGTTTGATTCCTACATGAAGGAGA-TCAAAGAGAGGAATC- 1558
Query 1985 CAGAAGCTTGGAAATGGTTAGACCAATTCCCTCAA-ACTCAGTGGGCTCTGGCTCATGAC 2043
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1559 CAGAAGCTTGGAAATGGTTAGACCAATTCCCTCCACA-TCAGTGGGCTCTGGCTCATGAT 1617
Query 2044 -AGTAGTCGGAGATTCGGAGTCATGACGATAGAAACAGAAGATTTGTTTGCAATTTGTGA 2102
| | ||||||||| |||| |||||| |||||| || |||| | | ||||| ||||| |
Sbjct 1618 GA-TGGTCGGAGATACGGAATCATGAGGATAGATACTGAAGCTCTCTTTGCTGTTTGTAA 1676
Query 2103 AAGCTTTC 2110
||| ||||
Sbjct 1677 AAGATTTC 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107529567390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5