BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474936
Length=1988
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64180.1 | Symbols: | intracellular protein transport prote... 2119 0.0
AT5G41620.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 440 2e-122
> AT1G64180.1 | Symbols: | intracellular protein transport protein
USO1-related | chr1:23821516-23824359 FORWARD LENGTH=2072
Length=2072
Score = 2119 bits (1147), Expect = 0.0
Identities = 1390/1503 (92%), Gaps = 33/1503 (2%)
Strand=Plus/Plus
Query 1 AAATGAAATGAGAGAGACACCAGCTTTCGA-CTCCATGATTATGAACAGAGAAAAAGGGT 59
|||||||| |||||||||| ||| ||| | ||||||||||||||||||||||||| |||
Sbjct 1 AAATGAAACGAGAGAGACAACAG--TTCCATCTCCATGATTATGAACAGAGAAAAAAGGT 58
Query 60 TTCTTCTTTATTAATAA--AACCAA-AAAGAGT-GAAACTTTTTGTTTAGTTTAGCCTCT 115
|||||| ||| ||| || ||| || ||| ||| | ||||||| |||||| |||||| ||
Sbjct 59 TTCTTC-TTAATAA-AAGCAACAAAGAAAAAGTCG-AACTTTTGGTTTAG-TTAGCCGCT 114
Query 116 CTCTaaagaaatgaaaagtaaagaagaagaggaagatgatg--gagg-aga--a-gaaga 169
|||||||||||||||||||||||||||||| ||||| || | |||| ||| | | ||
Sbjct 115 CTCTAAAGAAATGAAAAGTAAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGATGATGGAGG 174
Query 170 agaagggcaaaaagggaagagatttatagaaaagttaaggagaagagCTGTTCTTGTAGG 229
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 175 AGAAGGGCAAAAAGGGAAGAGATTTATAGAAAAGTTAAGGAGAAGAGCTGTTTTTGTAGG 234
Query 230 CCATAGAAGTTTCTTTCGCCGACCTTCCACTCCTACGCACATTGGTTTCAACCCTAATAA 289
|||||||||| ||||||||||||||||||||||| ||| ||| | ||||||||||||||
Sbjct 235 CCATAGAAGTGTCTTTCGCCGACCTTCCACTCCTGTGCATATTAGCTTCAACCCTAATAA 294
Query 290 TAACCCTTCTTCTTCTTCCTCCTCTAGAAAGCTTGCTGCTTCTCTCTGGGAATTTTATCA 349
|| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GAA-CC--CTTCTTCTGCCTCCTCTAGAAAGCTTGCTGCTTCTCTCTGGGAATTTTATCA 351
Query 350 GTATTACGACAACGACTATCAGATTCATCCTCCTTCTGCTACTAAAATGCACCGAGCTCC 409
|||||||||||||||| | | ||||||||||||| ||||||||||||||||| |||||||
Sbjct 352 GTATTACGACAACGACCACCTGATTCATCCTCCTGCTGCTACTAAAATGCACAGAGCTCC 411
Query 410 CTTAGGTTCTGCTGGTCCCAGTAACAACCGTCGTCTCCGTCACGGCCATGGAAA------ 463
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 412 CTTAGGTTCTGCTGGTCCTAGTAACAGCCGTCGTCTCCGTCACGGCCATGGAAAGGCGGC 471
Query 464 -G--GCAGACAATAATGGTCTTGAGTTCACTGATCACCAGCCAGAGAGTGCGGGAAGTAT 520
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 472 GGTTGCAGACAATAATGGTATTGAGCTCACTGATCACCAGCCAGAGAGTGCGGGAAGTAT 531
Query 521 AAGGAGACAGATTGGTCAAATGCTGATGAAGCATCATCATTTAACCGAAAGAAACGACCA 580
|||||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 532 AAGGAGACAGATCGGGCAAATGCTGATGAAGCATCATCATTTAACTGAAAGAAATGACCA 591
Query 581 TGCTTTGCAGCCGGTATCTCCTACAAGCTACGATAGCTCCCTCGAGTCTCCG-GGAAGAC 639
||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||
Sbjct 592 TGCTTTGCAGCCGGTATCTCCTACAAGCTACGATAGCTCATTGGAGT-TCCGTGGAAGAA 650
Query 640 GACGAGCTGGTGAGCCTAACTACAATCTCAAGACATCAACCGAACTTCTTAAAGTACTGA 699
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 651 GACGAGCTGGTGAGCCTAACAACAATATCAAGACATCAACCGAACTTCTTAAAGTGCTGA 710
Query 700 ACCGAATCTGGAGCCTCGAAGAGCAGCATTCCTCTAATATCTCCTTAATAAAATCTTTAA 759
|||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||| |
Sbjct 711 ACCGAATCTGGATCCTCGAGGAGCAGCATTCCGCTAATATCTCCTTAATAAAATCTTTGA 770
Query 760 AAACCGAGCTTGCTCATTCACGTGCCCGGATCAAAGAGCTTCTCAGATGCCAGCAGGCCG 819
|||||||||||||||| |||||||||||||||||||| ||||| |||||| |||| ||||
Sbjct 771 AAACCGAGCTTGCTCACTCACGTGCCCGGATCAAAGACCTTCTTAGATGCAAGCAAGCCG 830
Query 820 ATAGACGCGATATGGATGATTTAGTGAAGCAACTCGCGGGAGAAAAGCTGTCAAAAGATA 879
||| |||||||||||||||||| |||||||||||||||| |||||||||||| |||| ||
Sbjct 831 ATAAACGCGATATGGATGATTTTGTGAAGCAACTCGCGGAAGAAAAGCTGTCGAAAGGTA 890
Query 880 CGAAGGAACATGATCGGTTAAGCTATGCGGTTCAATCGCTAGAAGATGAGCGGAAACTGA 939
|||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |
Sbjct 891 CGAAGGAACACGATCGGTTAAGCTCTGCTGTTCAATCGCTAGAAGATGAGCGGAAACTAA 950
Query 940 GGAAACGTTCTGAGAGTTTGTATAGGAAATTGGCACAAGAGCTCTCGGAAGTGAAGTCAA 999
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GGAAACGTTCTGAGAGTCTGTATAGGAAATTGGCACAAGAGCTCTCGGAAGTGAAGTCAA 1010
Query 1000 CTTTGTGTAACTGCGTTAAGGAGATGGAGAGAGGGACTAAGTCAAAGAAGATTCTGGAGA 1059
| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1011 CGTTGTCTAACTGCGTTAAGGAGATGGAGAGAGGGACTGAGTCAAAGAAAATTCTGGAGA 1070
Query 1060 GATTATGTGATGAGTTTGCAAAAGGGATCAAGAGTTACGAAAGGGAGATTCATGGTTTAA 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GATTATGTGATGAGTTTGCAAAAGGGATCAAGAGTTACGAAAGGGAGATTCATGGTTTAA 1130
Query 1120 AGCAGAAGTTGGATAAGAACTGGAAAGGTTGGGGTGAACAAGATCAGATGGTTCTTTGTA 1179
||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 1131 AGCAGAAGTTGGATAAGAACTGGAAAGGTTGGGATGAACAAGATCATATGATTCTTTGTA 1190
Query 1180 TTGCGGAATCATGGCTTGATGAAAGGATTCAGAGTGGCAACGGATCGGCTTTGGAGAAGC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 TTGCGGAATCATGGCTTGATGAAAGGATTCAGAGTGGCAACGGATCGGCTTTGGAGAAGC 1250
Query 1240 TCGAGTTTGAGATAGAAACATTTCTTAAGACTAAGCAGAACGCAGACTCTAAAGAAATAG 1299
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1251 TCGAGTTTGAGATAGAAACATTTCTTAAGACTAATCAGAACGCAGACTCTAATGAAATAG 1310
Query 1300 CGAGAAATCGCCGGACTTCACTTGAGTCGGTTCCATTTAACGCCATGAGCGCCCCGATTT 1359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 CGAGAAATCGCCGTACTTCACTTGAGTCGGTTCCATTTAACGCCATGAGCGCCCCGATTT 1370
Query 1360 GGGAAGTCGACCATGAGGAGGAAGAAGATTCTGGCGGAAGCAATTCAAATTGTTTTGAGC 1419
||||||| |||| ||||||||| |||||||||||||||||| ||| |||||||||||||
Sbjct 1371 GGGAAGTAGACCGTGAGGAGGAGGAAGATTCTGGCGGAAGCGGTTCGAATTGTTTTGAGC 1430
Query 1420 TCAAGAAACATGGGAGTGATGTTGCAAAGCCACGAC-TCGGCGATGAAACTGAGAAACCG 1478
||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||||
Sbjct 1431 TCAAGAAACATGGGAGTGATGTTGCAAAGCCACCACGT-GGCGATGAAACTGAAAAACCG 1489
Query 1479 GAA 1481
|||
Sbjct 1490 GAA 1492
Score = 627 bits (339), Expect = 2e-178
Identities = 449/500 (90%), Gaps = 16/500 (3%)
Strand=Plus/Plus
Query 1480 AAAGACGGAATCAAAGCCCGTCGAGTTTACAAGTGAAGTTCGAGGATCAAATGGCGTGGG 1539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AAAGACGGAGTCAAAGCCCGTCGAGTTTACAAGTGAAGTTCGAGGATCAAATGGCGTGGG 1583
Query 1540 CGATGTCTTCTAATGAGAAAAAGAAAGCTAGAGCCATTG-AA---A--C-G-GA-T-A-A 1588
|||||||||||||||||||||||||| ||||||||| || || | | | | | | |
Sbjct 1584 CGATGTCTTCTAATGAGAAAAAGAAAACTAGAGCCAATGAAATGGAGCCTGAAACTGAGA 1643
Query 1589 A-TGTGGTAAAGGAACAAACAATGTAGTTGGAGAAATGATTAGAACTCATAGGAGGTTAT 1647
| |||||||||| ||| |||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 1644 AGTGTGGTAAAGAAACGAACAATGTGGTTGGAGAAATGATCAGAACTCATCGGAGGTTAT 1703
Query 1648 TGTCGGAAACTCGGGATATCAATGAAGCTTCTTGCAGTTACCCATCAAGAAGAAGAGAGA 1707
||||||||||||||| ||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 1704 CGTCGGAAACTCGGGAGATCGATGAAGCTTCTTGCAGTTACCCATCAAGGAGACGAGAGA 1763
Query 1708 GCCCGATTCGTCAATGGAATACGA-GAACCGTAACACCTGATCTCAGTGCGCCACAAGGA 1766
|||||||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||
Sbjct 1764 GCCCGATTCGTCAATGGAATAC-ACGAACCGTAACACCTGATCTTGGTGCGCCACGAGGA 1822
Query 1767 GTAAAGGACAACACTTTGAAGGCTAAACTAAGCGAAGCGAGAACAAAGAGTTCGAGGCCA 1826
|||||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct 1823 GTAAAGGATAACACTTTGAAGACTAAACTAAGCGAAGCGAGAACAACGAGTTCAAGGCCA 1882
Query 1827 CGAGTTCGGGTATTCAAGGGGTGAGTTTCTGATGTAATCTGTATACGGAAGAGCCATTCT 1886
|| ||| || ||||||||| ||||||||||||||||||||||| || |||||||||| |
Sbjct 1883 CGGGTTAGGCTATTCAAGGATTGAGTTTCTGATGTAATCTGTAT-CGTAAGAGCCATTTT 1941
Query 1887 TGGTGCAA-TGGTCAGACTCGGAGATGGAACAAGCTGAGATTGTTCCATGTGTGGATATG 1945
||| | || ||||| |||||| ||||||||||||||||||||||||||| |||| |||||
Sbjct 1942 TGGCGGAAATGGTCGGACTCGAAGATGGAACAAGCTGAGATTGTTCCATTTGTGTATATG 2001
Query 1946 TTCATCTGTAGAGCTTGTAT 1965
|||||||||||||||| |||
Sbjct 2002 TTCATCTGTAGAGCTTATAT 2021
> AT5G41620.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana
protein match is: intracellular protein transport protein
USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16646330-16648968
FORWARD LENGTH=2064
Length=2064
Score = 440 bits (238), Expect = 2e-122
Identities = 492/611 (81%), Gaps = 32/611 (5%)
Strand=Plus/Plus
Query 624 GAGTCTCCG-GGAAGACGACGAGCTGGTGAGCCTAACTACAATCTCAAGACATCAACCGA 682
|||| |||| ||||||| || || | || ||| |||||||||||||||||||||||||
Sbjct 538 GAGT-TCCGAGGAAGAC--CG-TCTAGAGAACCTCACTACAATCTCAAGACATCAACCGA 593
Query 683 ACTTCTTAAAGTACTGAACCGAATCTGGAGCCTCGAAGAGCAGCAT-TCCTCTAATATCT 741
||||||||||||||||||||| || |||||||| || ||||||||| || || |||||||
Sbjct 594 ACTTCTTAAAGTACTGAACCGTATTTGGAGCCTTGAGGAGCAGCATGTC-TCCAATATCT 652
Query 742 CCTTAATAAAATCTTTAAAAACCGAGCTTGCTCATTCACGTGCCCGGATCAAAGAGCTTC 801
|||| |||||| |||| ||||||||| | ||||||||||| | || ||||| |||||||
Sbjct 653 CCTTGATAAAAGCTTTGAAAACCGAGGTGGCTCATTCACGCGTTCGAATCAAGGAGCTTC 712
Query 802 TCAGATGCCAGCAGGCCGATAGACGCGATATGGATGATT-TAGTGAAGCAACTCGCGGGA 860
| || | |||||| |||||||||| ||| | || | | | |||||||||||||| | |
Sbjct 713 TTAGGTACCAGCAAGCCGATAGACACGAGCTAGAC-AGTGTGGTGAAGCAACTCGCTGAA 771
Query 861 GAAAAGCTGTCAA--AAGATACGAAGGAACATGATCGGTTAAGCTATGCGGTTCAATC-G 917
|||||| ||| | |||| | |||||| ||| ||| | |||| ||| ||||| || |
Sbjct 772 GAAAAGTTGTTGAGCAAGA-AT-AAGGAAGTTGAGCGGATGAGCTCTGCTGTTCAGTCCG 829
Query 918 ---------C-T-AGAAGATGAGCGGAAACTGAGGAAACGTTCTGAGAGTTTGTATAGGA 966
| | |||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 830 TGAGGAAAGCGTTAGAAGATGAGCGGAAACTTAGAAAACGTTCTGAGAGTTTGCATAGGA 889
Query 967 AATTGGCACA-AGAGCTCTCGGAAGTGAAGTCAACTTTGTGTAACTGCGTTAAGGAGATG 1025
|| ||||| | ||||||||||||||||||||| | |||| |||||| || |||||| |
Sbjct 890 AAATGGCA-AGAGAGCTCTCGGAAGTGAAGTCTTCGTTGTCTAACTGTGTCAAGGAGCTT 948
Query 1026 GAGAGAGGGACTAAGTCAAAGAAGATTCTGGAGAGATTATGTGATGAGTTTGCAAAAGGG 1085
||||||||| |||| ||||| ||||| ||||| | | || ||||||||||| ||||||
Sbjct 949 GAGAGAGGGTCTAAATCAAATAAGATGATGGAGCTACTCTGCGATGAGTTTGCCAAAGGG 1008
Query 1086 ATCAAGAGTTACGAA-AGGGAGATTCATGGTTTAAAGCAGAAG--T-TGGATAAGAACTG 1141
||||||||||||||| ||| ||||||| ||||||||| ||||| | | |||||| | ||
Sbjct 1009 ATCAAGAGTTACGAAGAGG-AGATTCACGGTTTAAAGAAGAAGAATCTTGATAAGGATTG 1067
Query 1142 GAAAGGTTGGGGTGAACAAGATCAGATGGTTCTTTGTATTGCGGAATCATGGCTTGATGA 1201
| ||| | |||| | ||||||| |||||||| |||||||||||| |||||||| ||
Sbjct 1068 GGCGGGTCGAGGTGGAGGAGATCAGTTGGTTCTTCATATTGCGGAATCTTGGCTTGACGA 1127
Query 1202 AAGGATTCAGA 1212
|||||| ||||
Sbjct 1128 AAGGATGCAGA 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98493469290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5