BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474947
Length=1635
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2087 0.0
> AT1G64080.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G52870.1); Has 1546
Blast hits to 738 proteins in 176 species: Archae - 0; Bacteria
- 143; Metazoa - 278; Fungi - 131; Plants - 95; Viruses
- 4; Other Eukaryotes - 895 (source: NCBI BLink). | chr1:23785021-23786800
REVERSE LENGTH=1688
Length=1688
Score = 2087 bits (1130), Expect = 0.0
Identities = 1466/1619 (91%), Gaps = 59/1619 (4%)
Strand=Plus/Plus
Query 1 TTTCATACCATTTTTATGAAAATGCAACTAAAAGCAACAAAGAACATTAATATTATTACA 60
|||||||||||||||||||||||| |||||||||||| |||||||| | || || | |
Sbjct 2 TTTCATACCATTTTTATGAAAATGGAACTAAAAGCAATAAAGAACA-T--TA-TA-T--A 54
Query 61 TTTATCTAGAAAAAATAAATTACTAATAATTTATATAGTATATAGCTTTCACTCTTCTCT 120
|||| ||||||||| || | ||||||||| |||| ||||||||||||||||||||||
Sbjct 55 --TATCAAGAAAAAAT-AA--AGTAATAATTTTTATA-TATATAGCTTTCACTCTTCTCT 108
Query 121 CACAAGCACCG-TA--AACCCTTCTTTTTCATCT--AA--A-AGGAGACTTTGAAGAAGA 172
|||||||| | || |||||||||||||||||| || | ||||||||||||||||||
Sbjct 109 TACAAGCACTGTTATTAACCCTTCTTTTTCATCTAAAAGGAGAGGAGACTTTGAAGAAGA 168
Query 173 AAGAAAACATTCAAAGCTCTAAAAACGCAGCGTTTTAGGAAAAAAGAGTTTGAGAGTGAT 232
|||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||
Sbjct 169 AAGAAAACATTCAAAGCT-AAAAAACGCAGCGTTTTAGGAAAAAAGAGGTAGAGAGTGAT 227
Query 233 TCTGGCTTTCCCAACAATGGATGCTTTCAGTCTCCTTAACTACTGGAAAAGCAGTGGTGG 292
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 228 TCTGGCTTTCCCAACAATGGAAGCTTTCAGTCTCCTTAACTACTGGAAAAACAGTGGTGG 287
Query 293 TGCTGTTACTTTCCTTCCTCAATCCTCCG-A-C-TCTTCTTC-T-TC-TTGCCGTTACTC 346
||||||||||||||||||||| ||||||| | | |||||||| | || ||||||||||||
Sbjct 288 TGCTGTTACTTTCCTTCCTCACTCCTCCGAATCTTCTTCTTCTTCTCTTTGCCGTTACTC 347
Query 347 CGCCGGCGAATCCACCGGAACCACCACCATTGTCACTTCCGTTACCGGAACTGAAGATGA 406
|||||| ||||||| ||||||||||||||||||||| || ||||||| |||||| || ||
Sbjct 348 CGCCGGTGAATCCATCGGAACCACCACCATTGTCACCTCTGTTACCGAAACTGAGGACGA 407
Query 407 AGAAGCTGATTACGACAACGACGAAGGACCCTTCTTCGACCTTGAGTTCGCTCTTCCAGC 466
|||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 408 AGAAGCTGATGAAAACGACGACGAAGGACCGTTCTTCGACCTTGAGTTCGCTCTTCCAGC 467
Query 467 TgaagaagacgaagaagaagaagaaAACACAGACGGAGGAGTCGGAAGAGAGGGAGATTC 526
| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 468 ---------C---GAAGAAGAAG---ACACAGACGGAGGAGTCGGAAGAGAGGGAGACTC 512
Query 527 CGATTGTACGGACGGCGGTTGTGAGTTCAAATTCACTCTCTCGTCTTGTTCCGGTGGAGA 586
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 513 CGATTGTACGGACGGTGGTTGTGAGTTTAAATTCACTCTCTCGTCTTGTTCCGGAGGAGA 572
Query 587 AGATCGAGTAGATCCAGATTCTCTTGATGATGTTTTCTTCAAGGAAACGATTGTTGAAGA 646
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 573 AGATCGAGTAGATCCAGATTCACTCGATGATGTTTTCTTCAAGGAAACGATTGTTGAAGA 632
Query 647 GGTCGAACCACCGTCGTCTTCAGAGCAGCAGACTTGTTCCGTTAAAGCTCCGGCGGCGCA 706
||| ||||||||| | ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 633 GGTTGAACCACCGACTTCTTCAGAGCAGCAGACATGTTCTGTTAAAGCTCCCGCGGCGCA 692
Query 707 GTTATCGGCGTCGATTTTGAAATCCGCCACTAAGCTTCGTGTGTTCATGCTCGGAATGAA 766
|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 693 GTTATCGGCGTCAATTTTGAAAACCGCCACCAAGCTTCGTGTGTTCATGCTCGGAATGAA 752
Query 767 GAAATCTAAGCTTATCCAAGCGAAATCAGAAGCTAATTTCGGATCTGAAGACCTCGAGAA 826
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 753 GAAATCAAAGCTAATCCAAGCGAAATCAGAAGCTAATTTCGGATCTGAAGACCTCGATAA 812
Query 827 G-AATAATCCTCCTCTTCCGCCGTCGTCACTCTCGCCGGAATCGCAACAGAAAAGTACGG 885
| || | || ||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 813 GCAA-ACTCATCCTCCTCCGCCGTTATCACTTTCGCCGGAATCGCAACAGAAAAGTACGG 871
Query 886 TGACAGTTAATTTAAAAGTTGAAGAGGCTCCGATAATTTCTCTGTT-TACCAGAGAAAAC 944
||||||| ||||||||||||||||| | ||||||||||||||| || | | |||||||||
Sbjct 872 TGACAGTGAATTTAAAAGTTGAAGAAGTTCCGATAATTTCTCTATTCT-CAAGAGAAAAC 930
Query 945 AGCTCGAAGAACTCAtcttcgtcgtcttcttcttcatcttcttcgtcttcCTCGTTAAGG 1004
||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| |
Sbjct 931 AGCTCGAAGAACTCATCTTCGTCTTCTTCTTCATCTTCTTCTTCGTCTTCCTCATTAAAG 990
Query 1005 AAGCAAAACGGCAACGAATCTGTCGTTTCAGACGAGAAACGATTCGTGATGATGCAAAAG 1064
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 991 AAGCAAAACGGCAACGAATCTGTCGTTTCAGATGAGAAACGATTCGTGATGATGCAAAAG 1050
Query 1065 TACTTAAAGAAGGTAAAGCCACTTTACATCAGAGTTTCACGTCGTTACGGTGAGAAATTA 1124
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1051 TACTTAAAGAAGGTAAAACCACTTTACATCAGAGTTTCACGTCGTTACGGCGAGAAATTA 1110
Query 1125 CGACATTCCGGTCAACTAACCGCTCCGTC--C-GCGAGATCCACGGCGGAGAAAACGGAA 1181
||||| |||||||||||||| ||||| || | ||||||||||||||||||||| | ||
Sbjct 1111 CGACACTCCGGTCAACTAACAGCTCCATCGTCTGCGAGATCCACGGCGGAGAAAGCAGAT 1170
Query 1182 TCTCCGACGGCCACGAAGACTA-T--TAAACCGGGAAACATAAACATCAACATTCCAGCT 1238
|| ||| ||| |||||||||| | ||||||||| |||| | ||||||||||||||||
Sbjct 1171 TCGCCGGTGGCTACGAAGACTAATAATAAACCGGGGAACA-A--CATCAACATTCCAGCT 1227
Query 1239 GGTCTTAAAGTAGTGAGAAAACACCTCGGAAAAAGCAGATCGTCGTCTTCAACGGCGACA 1298
||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| |||||
Sbjct 1228 GGTCTTAAAGTAGTGAGGAAACATCTCGGGAAAAGCAGATCGTCATCTTCAACAGCGACT 1287
Query 1299 ACACCATCGTCTACGGCGGCCACTGTTACGACTCCGTCTGAGTCAAGAAGACGCGACGAC 1358
||||| |||||||| |||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1288 ACACCGTCGTCTACTACGGCGACTGTAACGACTCAGTCTGAGTCAAGAAGACGCGACGAC 1347
Query 1359 TCACTTCTTCAACAACAAGATAGTATTCAAAGCGCCATTTTACACTGCAAAAGATCTTTT 1418
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1348 TCGCTTCTTCAACAACAAGATAGTATTCAAAGTGCCATTTTACACTGCAAAAGATCTTTC 1407
Query 1419 AATTCCTCTAGAGATAAAGATTCGTCGGTGTTACCAAGATCGGTGAGTGAACCTTCCTCT 1478
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1408 AATTCCTCTAGAGATAAAGATCCGTCGGTGTTACCAAGATCGGTGAGTGAACCTTCCTCT 1467
Query 1479 TACGAAAAATAAGATAATATCGTAATCtttttttt-ATTAGTTTCAAGAGAATCTCAACG 1537
||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1468 TACGAGAAATGAGATAATATCGTAATCTTTTTTTTTATTAGTTTCAAGAGAATCTCAACG 1527
Query 1538 GTTTTCATTTTCTCACATTAACAACTT-ATAATAATTATGGGTTATTGTAAATATTTTT 1595
|| || |||||||| |||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1528 GTATTGATTTTCTCGCATTAACAACTTCATAATAATTATGGGTT-TTGTAAATATTTTT 1585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80772676905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5