BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474948
Length=918
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64065.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1275 0.0
> AT1G64065.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr1:23778353-23779529
FORWARD LENGTH=1177
Length=1177
Score = 1275 bits (690), Expect = 0.0
Identities = 858/935 (92%), Gaps = 27/935 (3%)
Strand=Plus/Plus
Query 1 CTCGCTTTTATaaacgaat-aaaa-aaaatcaaaattaacacacaaaaaggagtaaactc 58
||||||||||||||||||| |||| |||||||||||||||||||||||| || |||| |
Sbjct 9 CTCGCTTTTATAAACGAATAAAAATAAAATCAAAATTAACACACAAAAAAGAATAAAATA 68
Query 59 attaaaggaacaaaaaaaaaTCAAGCCCTCC-GAGAAAGACTT-TTAAGAAAAAGAAAAA 116
|||||| | || |||||||||||||||| || |||||||| ||||| | | |||||
Sbjct 69 ATTAAAAG-AC----AAAAATCAAGCCCTCCGGA-AAAGACTTATTAAG-GATA-AAAAA 120
Query 117 CACCGCGTAAGGCTCTAACTCAACACGATC-TCGCCACGTGTCCTCCACAAATCCCTCTT 175
||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||
Sbjct 121 CACCGCGTAAGACTCTAACTTAACACGATCGT-GCCACGTGTCCTCCAGAAATCCCTCTT 179
Query 176 TTAACCGCCAAAAAAGAAACCACCCACTCTTCCATTAACATTAAC--TCCTC-TCTTCCT 232
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 180 TTAACCGCCAAAAAAGAAACCACCCACTCTTCCATTAACATTAACTTTCCTCATCTTCTT 239
Query 233 CTCCTTCTTCCTCTGA--T---C--C-AAACAAAAAATGGTGGAAGAAGATCGGATAACG 284
|| ||||||||||||| | | | ||||||||||||||||| ||||||||||||||
Sbjct 240 CTTCTTCTTCCTCTGATCTAAACAACAAAACAAAAAATGGTGGACGAAGATCGGATAACA 299
Query 285 TTAGCTCCGACGGCGATCTATGGCCGGAGCGATGAAGAACAGAACGAACCAAGAATCTGG 344
||||||| || | |||||||||| |||| ||||||||||||| || |||||||||||||
Sbjct 300 CTAGCTCCTACCGAGATCTATGGCAGGAGTGATGAAGAACAGAGCGGACCAAGAATCTGG 359
Query 345 CGTCGGAAAACAGAGGAACCTCCAGGGAAATGTCTAGTCTATTCCTTAACAATAATCGTC 404
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTCGGAAAACAGAGGAACCACCAGGGAAATGTCTAGTCTATTCCTTAACAATAATCGTC 419
Query 405 ATCATCTTCGCACTTTGTCTCATCCTCTCTTCAATCTTTCTACGGATTTCAAAACCAGAG 464
|||||||||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 420 ATCATCTTCGCACTTTGTCTCATCCTATCTTCAATCTTTCTCCGTATCTCAAAACCAGAG 479
Query 465 ATTGAAACAAGATCAATATCCACTCGAGATCTTCGATTTGGAGGTAATTCAACAAACCCT 524
|| ||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 480 ATCGAAACAAGATCAATATCGACTCGAGATCTACGATCGGGAGGTAATTCAACAAACCCT 539
Query 525 TACTTCAATGCCACGCTAGTAAGTGATATCTCGATCAGAAACTCCAATTTTGGCGCATTT 584
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 540 TACTTCAACGCCACGCTAGTAAGTGATATCTCGATCAGAAACTCGAATTTTGGCGCGTTT 599
Query 585 GAGTTTGAGGATAGTTCGTTACGTGTTGTTTACGCTGATCATGGTGTTGTGGGAGAGACC 644
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAATTTGAGGATAGTACGTTACGTGTTGTTTACGCTGATCATGGTGTTGTGGGAGAGACC 659
Query 645 AAGATTGA-GGGTAGAAGAGTTGAAGCTCATAAGACGGTTAGGATAACCGATGTTGTGGT 703
|||||||| ||| |||||||| |||||||||||||||||||||||||||| |||||| ||
Sbjct 660 AAGATTGAAGGG-AGAAGAGTGGAAGCTCATAAGACGGTTAGGATAACCGGTGTTGTAGT 718
Query 704 TGAGATCGGTTCGTTTCGGTTATTGAATAATAAGGATTTGGATTCGGATTTGAGATTAGG 763
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||
Sbjct 719 TGAGATCGGTTCGTTTCGGTTATTGGATACTAAGGATTTGGATAAGGATTTGAGATTAGG 778
Query 764 GTTTTTGGAATTGAGAAGTGTTGCTGAGGTTAGAGGAAGGATTAAGGTTTTGGGAAGAAG 823
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTTTTGGAGTTGAGAAGTGTTGCTGAGGTTAGAGGAAGGATTAAGGTTTTGGGAAGAAA 838
Query 824 GAGATGGAAAGTTAGTGTGATGAGTTGTACCATGAGACTTAATTTAACCGGTCGGTTTAT 883
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 AAGATGGAAAGTTAGTGTGATGAGTTGTACCATGAGACTAAATTTAACCGGTCGGTTTAT 898
Query 884 TCAAAATTTGTTATGTGGATAGTAGTGAGTGATTG 918
||||||||||||||||| |||||||||| ||||||
Sbjct 899 TCAAAATTTGTTATGTGAATAGTAGTGATTGATTG 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44859093271
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5