BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474950
Length=2449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64050.1 | Symbols: | unknown protein; Has 524 Blast hits t... 3591 0.0
> AT1G64050.1 | Symbols: | unknown protein; Has 524 Blast hits
to 342 proteins in 101 species: Archae - 0; Bacteria - 106;
Metazoa - 106; Fungi - 24; Plants - 25; Viruses - 0; Other
Eukaryotes - 263 (source: NCBI BLink). | chr1:23762365-23766033
FORWARD LENGTH=2545
Length=2545
Score = 3591 bits (1944), Expect = 0.0
Identities = 2331/2506 (93%), Gaps = 74/2506 (3%)
Strand=Plus/Plus
Query 4 aaaaaaaCCCAAATCAATCTCACTCTTTTAGCTCACTTTTCTCCAGAAATTTCTAAG--- 60
||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 53 AAAAAAAACCAAATCAATCTCACTCTTGTAGCTCACTATTCTCCAGAAATTTCTAAGATT 112
Query 61 -A----T-T-T--AG--C--T--AACTATCTGGG-TTTGCTTTAAAAGGAGATGATGAGT 104
| | | | || | | ||||||||||| |||| ||||||||||||||||||||
Sbjct 113 TAGCTTTCTCTAAAGCTCGATCGAACTATCTGGGTTTTGGTTTAAAAGGAGATGATGAGT 172
Query 105 TCGTATCGCAGCTTACAC-G--GC--TG----CGATTTGGGTTTGTGATGGATGGTTTGA 155
|||||||||||||||||| | || || ||||||||||||||||||||||||||||
Sbjct 173 TCGTATCGCAGCTTACACGGCTGCGATGTTTTCGATTTGGGTTTGTGATGGATGGTTTGA 232
Query 156 AGATTTCTTGTCCTGTGGATGTTTCGTTGCCGGCTAAGCTTATGGGATCTGAAGGGTGTG 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 AGATTTCTTGTCCTGTGGATGTTTCGTTGCCGGCTAAGCTTATGGGATCTGAAGGGTGTG 292
Query 216 GTGGTGGAGTTAGGGTTTCGTCCAATAAAGCAGATAACAACTGTGAGAAAGCTCGTGTCT 275
|||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct 293 GTGGTGGAGTTAGGGTTTCGTCGAATAAAGCAGATAACAACTGTGACAAGGCTCGTGTCT 352
Query 276 CGATTGGTGTTAATTCTTCAATTGAGCG-T-T-GTAGTGCTTCAATCAACAAGAAAGGAG 332
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 353 CGATTGGTGTTAATTCTTCAATTGAGCGTTGTAGTAGTGCTTCAATCAACAAGAAAGGAG 412
Query 333 CAGGAAGTAGCAGTGGGGGGTCGGATTCATCGTTATGGCGCAAGTTAATGCATTCACACG 392
|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 413 CAGGAAGTAGCAGTGGAGCGTCTGATTCATCGTTATGGCGCAAGTTAATGCATTCACATG 472
Query 393 ACTTTGTACATGATAGGCTTACTAAACTTCGGGTTGATAATTCATCGGAGCCTCAAAATG 452
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 473 ACTTTGTACATGATAGGCTTACTAAACTTCGGGTTGACAATTCATCTGAGCCTCAAAATG 532
Query 453 GTTATTCACCGATTGCTAGTCCAGAAAGTGCGGAGTCTCCTAGGAAAAGAGGAAAGCTTT 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 533 GTTATTCACCGATTGCTAGTCCAGAAAGTGCGGAGTCTCCTAGGAAAAGAGGAAAACTTT 592
Query 513 CGAGAAGTAGTA---GTAATGGGACTCCGAGAAGGACGAAATTGATCCTTTTAGATGATA 569
| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 593 CTAGAAGTAGTAGTGGTAATGGCACTCCGAGAAGGACGAAATTGATCCTTTTAGATGAAA 652
Query 570 CGGTGAGCATACCGAGAGATAACGACACTAAGGAGATATGTGGACAAGGATCTACTAGCT 629
||||||| | || ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 653 CGGTGAGGACACAGAGAGATAACGACACCAAGGAGATATGTGGACAAGGATCTACTAGTT 712
Query 630 GCTTAGATAAACCGTTTGTGGTGAAGCAACGGACCAGTTGTAACGGCAAGCGAGGTGATA 689
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 713 GCTTAGATAAACCGTTTGTGGTGAAGCAACGGAGCAGTTATAACGGCAAGCGAGGTGATA 772
Query 690 AGAGGATTTCCAAAGTTCCCGTGAGAACTTTTTCAACCATCACTTCAGCCACTGGCGAGA 749
||||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||
Sbjct 773 AGAGGATTTCCAAAGTTCCGGTGAGAACTTTATCAACCATCAATTCAGCGACTGGCGAGA 832
Query 750 ATGCATTTTTCGGTGCTTATGGTCTGAAGCCTGCAATAAATGATGTTACCAAACTCGTTG 809
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 833 ATGCATTTTTCGGTGCCTATGGCCTGAAGCCTGCAATAAATGATGTTACCAAACTCGTTG 892
Query 810 AAGATTTGTCTTTGAAAAATCTTCTTGAAGGCTCTTATGAGTGTCCTTCTCTGGGCAAAG 869
||||||| || ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 893 AAGATTTTTCATTGAAAAGTCTTCTTGAAGGCTCTTATGAGTGTCCTTCTTTGGGCAAAG 952
Query 870 ACAAGATGAAGAAATTGGAGAATACTAACGACATTTTATTGAGTGTAGTCAAAAATGTTT 929
||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 953 ACAAGATGAAGAAATCGGAGAATACTAACAACACTTTATTGAGTGTAGTCAAAAATGTTT 1012
Query 930 GGTCCATTGTACCAACAAAGAGGCCTGTTCAATCACAAAGCTCTACTGAATTAGACACTT 989
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGTCCATTCTACCAACAAAGAGGCCTGTTCAATCACAAAGCTCTACTGAATTAGACACTT 1072
Query 990 GTCTCAGCAGAACTCTGGGTTCACCACCCAGCTCTATCTCTGCTACACTACTAAATGGTG 1049
||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||
Sbjct 1073 GTCTCAGCAGAACTCTGGGTTCACCGCCTAGCTCTATCTCTGCTACACTACCAAATAGTG 1132
Query 1050 AAAACATCGATAACA-CAAATGCCCTGGATGGAGATCTATCCTCATCTTCCAAGGATCAT 1108
||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1133 AAAACATCGATAA-AGTAAATGCCCTGGATGGAGATCTATCGTCATCGTCCAAGGATCAT 1191
Query 1109 TGCATCAACTCTGAAATTCCTTCCACTCCACTTAGTTTTCCATTATGCGACGCTGTAGAT 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1192 TGCATCAACTCTGAAATTCCTTCCACTCCACTTAGTTTTCCATTATGCGACGCTGGCGAT 1251
Query 1169 GTATTGAAACGATTAGGCCTTCCGCCGTCGAAAGATTTAGACTCTCTGCTCCAAGATGCA 1228
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1252 GTATTGAAAAGATTAGGCCTTCCTCCGTCGAAAGATTTAGACTCTCTGCTCCAAGATGCA 1311
Query 1229 TCAAAACCTTCTCAGAACTCTAAGATCAACTTGGACCAGCAGCGTTCAGCTAAACAACTA 1288
|||||||||||||| |||||||||| ||| ||||||||||||||||||||| || |
Sbjct 1312 TCAAAACCTTCTCATAACTCTAAGAACAATTTGGACCAGCAGCGTTCAGCT----AA--A 1365
Query 1289 CCTCCTCGTAGTGGATTGCCACATTTCCCTTGGTCGCAGGCCTTTAGTGGGAGCTCTAGA 1348
||||||| |||||||||||| |||||||||||||||||| |||||| |||||||||||||
Sbjct 1366 CCTCCTCATAGTGGATTGCCTCATTTCCCTTGGTCGCAGCCCTTTAATGGGAGCTCTAGA 1425
Query 1349 GCCAACTCAGAAGCAGCAAAGCTTGTAACCGGCAAGACACTTTGTCAAGGACGATGGCTA 1408
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1426 ACCAACTCAGAAGCAGCAAAGCTTGTGACCTGCAAGACACTTTGTCAAGGACGATGGCTA 1485
Query 1409 AGAATAGCCAACACTACTATGAGTTCTCCAGATGGTATAACCGATAATTTCGCAAATCTG 1468
||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1486 AGAATAGCCGACACTTCTATGAGTTCTCCAGAGGGTATAACCGATAATTTCGCAAATCTG 1545
Query 1469 GGATCACTCACTTTCAACCAAAACTTAGTCCCTCCATTACTGAAGCAGACTATTGCTGGA 1528
| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||
Sbjct 1546 GAATCACTCACTTTCAACCAAAACTTAGTCCCTCCACTACTGAAACAGACTATTACTGGA 1605
Query 1529 ATTAAGACCTCTCAAACAAAATTCGCTAACATCATTTCGTGCCAGTGCACAGAAGCATCT 1588
|||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||
Sbjct 1606 GTTAAGACCTCTCAAACAAAATTCGCTAACACCATTTCATGCCAGTGCGCAGAAGCATCT 1665
Query 1589 GTTTCTACCCTTCAAAAAGCTTCCTTTGTTCCTAAAGAACCAGAGGGATCCCCAGATGTT 1648
||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1666 GTTTCTACCCTTCAAAATTCTTTCTTTGTTCCCAAAGAACCAGAGGGATCCCCAGATGTT 1725
Query 1649 CAAGATGATGCTCTTTCCTGTCCACAGCTATTAGAAGCTGCTCGAACGCTCTGTGACATT 1708
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1726 GAAGATGATGCTCTTTCATGTCCACAGCTTTTAGAAGCTGCACGAACGCTCTGTGACATT 1785
Query 1709 GCAGTCCAGTCCGCAAACCAC-ATCAACCCAAACGGAATCCTCAGATGGCCAAAGAAGCT 1767
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1786 GCAGTCCAGTCCGCAAACCACGA-CAACCCAAACGGAATCCTCAGATGGCCAAAGAAGCT 1844
Query 1768 CTCTCAGAAATCCATGAAAGCCCGCAAATCCAAACTAATCGAAAAGCCTCTGGAAAGGCA 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 CTCTCAGAAATCCATGAAAGCCCGCAAATCCAAACTAATCGAAAAGCCTCTGGAAAGGCA 1904
Query 1828 CGGGACAACTGTTTCATCCTTAGATCTTAACTCAAGCAACAACAACAATAACAAGAACCA 1887
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1905 CAGGACAACGGTTTCATCCATAGATCTTAACTCAAGCAACAACAACAATAACAAGAACCA 1964
Query 1888 CGTGAGAAAAGATTCAGCAGCAGAGCATAatcatcatcatcatcatcatcatTTTCCTAA 1947
||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1965 CGTGAGAAAAGATTCAGCAGCAGAGCATAATCACCACCATCATCATCATCAT---CCTAA 2021
Query 1948 GCCTTCAAAGAGACTGAAACTATCAACAATGGAGAACAAGAAAAGATCATTCCCAAGCTC 2007
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2022 GCCTTCAAAGAGACTGAAACTATCAACAATGGAGAACAAGAAGAGATCATTCCCGAGCTC 2081
Query 2008 ATCATCATCCCCAATAGAATCAGATAGAAAACATTCATCTTCAAGCAAGTTCAAGAATCA 2067
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2082 ATCATC--CCC-AATAGAATCAGATAGAAAACATTCATCTTCAAGCAAGTTCAAGAATCA 2138
Query 2068 CTCCCGTATGATGCTGCCGCCTCCACCACCAACGAGAACACTCCAAAAGTCATCCATGTA 2127
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2139 CTCCCGTATGATGTTGCCGCCTCCACCACCAACGAGAACACTCCAAAAGTCATCCACATA 2198
Query 2128 TCCTCAGAAAGCTCGGAAATTTCCATGAACCGGTTGAAAATAA-A---------CCA-AT 2176
||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 2199 TCCTCAGAAAGCTCGGAAATTTCCATGAACCGGTTGAAAATAAGAGTGGTGGATCCATAT 2258
Query 2177 ---C---T-T-GTTTACTCAAAA-AA-CCGGTCTGGTTTTACAAGTGG-CATATCGGCGT 2225
| | | | |||||||||| || ||||| |||||||||||| || |||| ||||||
Sbjct 2259 AAACCAATCTTGATTACTCAAAAGAAACCGGTTTGGTTTTACAAGGGGACATAACGGCGT 2318
Query 2226 CGTAGGAGTCGTATGTAAATATGAATGGTGTCACGGTGTAAGGTAAGTTCTTCTCTATGT 2285
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2319 CGTAGGAGTCGTCTGTAAATACGAATGGTGTCACGGTGTAAGGTAAGTTCTTCTCTATGT 2378
Query 2286 GGACAGTGTTTAGGTGCAGAAGACTATATATATAGTGTTGCCTTCAATGTTGTATCATTA 2345
||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 2379 GGACAGTGTTTAGGTGCAGAAGACTATATATATTGTATTGCCTTCAATGTTGTAACATTT 2438
Query 2346 TTTTTT--CAGTTGTAGTTGTAGCCACACAGTTCTTTTTAAGGTCTGTTGTGTTTGAAGA 2403
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2439 TTTTTTTTCAGTTGTAGTTGTAGCCACACAGTTCTTTTTAAGGTCTGTTGTGTTTAAAGA 2498
Query 2404 TTTTTAATTCTACGAGGTCAATGATAAAAATCTCAACTTCAGTGTC 2449
||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 2499 TTTTTAATTCTACGAGGTCAATGATAAAATTCTCAACTTGAGTGTC 2544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121504335946
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5