BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474951
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64040.1 | Symbols: TOPP3 | type one serine/threonine protei... 2085 0.0
> AT1G64040.1 | Symbols: TOPP3 | type one serine/threonine protein
phosphatase 3 | chr1:23758283-23760558 REVERSE LENGTH=1596
Length=1596
Score = 2085 bits (1129), Expect = 0.0
Identities = 1329/1418 (94%), Gaps = 44/1418 (3%)
Strand=Plus/Plus
Query 1 ACGAGCCGCACGTGTGCTTTCCTTTTCTCTCCTTCCCCGTTCTCTAGCCGATTCTCTCTG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ACGAGCCGCACGTGTGCTTTCCTTTTTTCTCCTTCCCCGTTCTCTAGCCGATTCTCTCTG 60
Query 61 TCTAGGGCTCCTCCG---TCTTCTTCT--TACCTTAACAAACCAC-AAA-----C--CT- 106
||||||||||||||| ||||||||| |||||| ||| ||||| ||| | ||
Sbjct 61 TCTAGGGCTCCTCCGTCTTCTTCTTCTCATACCTTCACATACCACAAAACCTCTCTTCTC 120
Query 107 TCTC------TTCTCTACGAAGAGGAAGGTGATTCTGAACCACCTTGATCGGAGACGGCG 160
|||| ||||||||||||||||| |||||| ||||||| |||||||||| ||||||
Sbjct 121 TCTCTATTGATTCTCTACGAAGAGGAAAGTGATTTTGAACCATCTTGATCGGAAACGGCG 180
Query 161 -TTCCATAACTAGAGGTCGGAGAAC-AAAATAAACTCTTATCTCATCGCTCCGGTGTATC 218
||| | |||| ||||||| || || |||| ||||||||||||||||||||||||||| |
Sbjct 181 TTTCGA-AACTGGAGGTCGAAG-ACGAAAA-AAACTCTTATCTCATCGCTCCGGTGTACC 237
Query 219 GAATTCGAGGGGGGTTTTTGTTCGGTTTAGTAGTGATTGATTGATTTTGATGGAAGATAG 278
|||||||| | |||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 238 GAATTCGA--GAGGTTTTTGTTAGGTTTCGTAGTGATTGATTGATTTTGATGGAAGATAG 295
Query 279 TGTAGTGGATGATGTTATAAAGAGGTTACTGGGAGCGAAAAACGGGAAGACGACGAAGCA 338
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 296 TGTGGTGGATGATGTTATAAAGAGGTTACTAGGAGCGAAAAACGGGAAGACGACGAAGCA 355
Query 339 GGTTCAGTTGACGGAGGCTGAGATTAAACATCTTTGTTCTACCGCTAAGCAGATCTTTCT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GGTTCAGTTGACGGAGGCTGAGATTAAACATCTTTGTTCTACCGCTAAGCAGATCTTTCT 415
Query 399 CACTCAACCTAATCTTCTTGAACTCGAGGCTCCTATTAAGATTTGTGGAGATACTCATGG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CACTCAACCTAATCTTCTTGAACTCGAGGCTCCTATTAAGATTTGTGGAGATACTCATGG 475
Query 459 TCAGTTCTCAGATCTTTTGAGATTGTTCGAGTACGGTGGCTACCCACCAGCTGCAAACTA 518
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 476 TCAGTTCTCAGATCTTTTGAGATTGTTCGAGTATGGTGGCTACCCACCAGCTGCAAACTA 535
Query 519 TTTGTTTCTTGGGGATTATGTAGATCGTGGAAAGCAGAGTGTAGAGACCATATGCCTTCT 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTTGTTTCTTGGGGATTATGTAGATCGTGGAAAGCAGAGTGTAGAGACCATATGCCTTCT 595
Query 579 CCTTGCTTACAAGATCAAATACAAAGAGAATTTCTTTCTTCTACGGGGGAACCATGAATG 638
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 596 TCTTGCCTACAAGATCAAATACAAAGAGAATTTCTTTCTTCTACGTGGGAACCATGAGTG 655
Query 639 TGCTTCTATAAACCGTATATACGGATTCTATGACGAGTGCAAGAAGAGATATAGCGTTCG 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TGCTTCTATAAACCGTATATACGGATTCTATGACGAGTGCAAGAAGAGATATAGCGTTCG 715
Query 699 AGTCTGGAAGATATTTACTGACTGCTTTAATTGTCTCCCTGTTGCTGCTCTTATCGATGA 758
||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 716 AGTGTGGAAGATATTTACTGACTGCTTTAATTGTCTACCTGTTGCTGCTCTTATTGATGA 775
Query 759 AAAGATCCTCTGTATGCATGGTGGGCTATCGCCTGAGTTGAAGCACTTGGATGAGATCAG 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAAGATCCTCTGTATGCATGGTGGGCTATCGCCTGAGTTGAAGCACTTGGATGAGATCAG 835
Query 819 GAACAT-CGCTCGTCCTGCTGACATTCCTGATCATGGACTACTGTGTGATCTCTTGTGGT 877
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 836 GAACATTC-CTCGTCCTGCTGACATTCCTGATCATGGACTACTGTGTGATCTGTTGTGGT 894
Query 878 CTGATCCTGACAAGGACATTGAAGGATGGGGAGAGAATGACAGGGGCGTCTCTTACACTT 937
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 895 CTGATCCTGACAAAGACATTGAAGGATGGGGAGAGAATGACAGGGGTGTCTCGTACACTT 954
Query 938 TTGGGCCTGATAAAGTCGAGGAGTTTCTCCAAACACATGACCTTGACTTAATTTGCAGAG 997
||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 955 TTGGGGCTGATAAAGTCGAGGAGTTTCTTCAAACGCATGACCTTGACTTAATTTGTAGAG 1014
Query 998 CTCATCAGGTTGTGGAAGACGGGTATGAATTCTTTGCAAATAGACAGCTAGTAACGATAT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CTCATCAGGTTGTGGAAGACGGGTATGAATTCTTTGCAAATAGACAGCTAGTAACGATAT 1074
Query 1058 TCTCGGCCCCAAACTACTGCGGAGAGTTTGATAACGCAGGAGCAATGATGAGTGTGGATG 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TCTCGGCCCCAAACTACTGCGGAGAGTTTGATAACGCAGGAGCAATGATGAGTGTGGATG 1134
Query 1118 ATTCATTGACGTGCTCATTTCAGATCCTTAAAGCATCTGAGAAGAAAGGAAATTTCGGAT 1177
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1135 ATTCCTTGACGTGCTCATTTCAGATCCTTAAAGCATCTGAGAAGAAAGGAAACTTCGGGT 1194
Query 1178 TTGGCAAAAATGCAGGAAGGCGAGGAACCCCGCCTCGCAAGTTCTATTAGGGGTGGAAAA 1237
||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 1195 TTGGCAAAAATGCAGGAAGGCGAGGAACCCCGCCTCGCAAGGG-T----GG--TGGAAAA 1247
Query 1238 GGCTGAAGAGAAATCCAATAAACTCTGCTTTGTGTGTTCCATGTTTCTTGGTTCAAGACA 1297
||||||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1248 GGCTGAAGACAAATCCCATAAACTCTGTTTTGTGTATTCCATGTTTCTTGGTTCAAGACA 1307
Query 1298 CTTGCTTGATCAGCTGAACTTATCAAACTGTCTTCTTCTTCTTCT------GCTCTGGAT 1351
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1308 CTTGCTTGATCAGCTGAACTTATCAAACTGTCTTCTTCTTCTTCTTCCTCTGCTCTGGAT 1367
Query 1352 CACTCTAGCAAGGGGTACTTCTGTATTATTCTCTGTGA 1389
|||| | ||||||||||||||||| || ||| || |||
Sbjct 1368 CACTTTGGCAAGGGGTACTTCTGTCTT-TTCCCT-TGA 1403
Score = 198 bits (107), Expect = 1e-49
Identities = 118/123 (96%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1375 TATTATTCTCTGTGAGATACACTTTATGTCGtttttttGTTAAAACATTTATATGAAAAT 1434
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1448 TATTATTCTCTGTGAGATACACTTTATGTCG-TTTTTTGTTAAAACATTTAAATGAAAAT 1506
Query 1435 CCTAATGTTCCTCGTCACTTGGAAAAAA-CGGCACGGTGTTTTGTTTGGAAACTTAACAA 1493
| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1507 CATAATGTTCCTCGTCACTTGGAAAAAAACGGCACGGTGTTTCGTTTGGAAACTTAACAA 1566
Query 1494 TGA 1496
|||
Sbjct 1567 TGA 1569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5