BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474953
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64030.1 | Symbols: ATSRP3, SRP3 | serpin 3 | chr1:23752873-... 1611 0.0
AT1G65385.1 | Symbols: | pseudogene, putative serpin, blastp m... 850 0.0
AT1G64035.1 | Symbols: | pseudogene, putative serpin, blastp m... 374 1e-102
> AT1G64030.1 | Symbols: ATSRP3, SRP3 | serpin 3 | chr1:23752873-23754348
REVERSE LENGTH=1158
Length=1158
Score = 1611 bits (872), Expect = 0.0
Identities = 1071/1166 (92%), Gaps = 17/1166 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTAAGAGCAGCTATGAAGAACCAAACCGAAGTCGCGATGATCCTTTCCCGGCAC 60
||||||||||||| ||||||||||||||||||| | || || |||||||||||| |||||
Sbjct 1 ATGGATGTAAGAGAAGCTATGAAGAACCAAACCCACGTTGCCATGATCCTTTCCGGGCAC 60
Query 61 TTCTTAACTTCCGCGCCGAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTCA 120
||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GTCTTATCTTCCGCGCCCAAAGACTCTAACGTCATCTTCTCACCGGCGTCAATAAACTCT 120
Query 121 GCGATCACCATGCACGCCGCTGGTCCCGGCGGTGATGTAGTCTCCGGTCAATTCCTCTAC 180
|||||||| |||||||||||||||||||| |||||| |||||||||| ||| |||||| |
Sbjct 121 GCGATCACGATGCACGCCGCTGGTCCCGGAGGTGATTTAGTCTCCGGCCAAATCCTCTCC 180
Query 181 TTACTCAGATCTTCTTCAATCGATGAGCTCAAAACCGTCTTCCGAGAACTAGCCTCCGTT 240
|| || ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 181 TTCCTAAGATCATCTTCAATTGATGAGCTCAAAACCGTGTTCCGAGAACTAGCCTCCGTC 240
Query 241 GTCTACGCCGACAGCAGCGGCAGCGGTGGCCCAAAGATAACGGCGGCGAATGGCCTCTGG 300
||||| |||||||| |||| || ||| ||||||||||||||||||||||||||||| |||
Sbjct 241 GTCTATGCCGACAGAAGCGCCACCGGCGGCCCAAAGATAACGGCGGCGAATGGCCTTTGG 300
Query 301 ATTGATAAATCACTTCCCACTGATCCCAAGTTCAAGGATCTATTGGAGAACTTCTTCAAG 360
||||||||||||||||| |||||||||||||||||||| || || ||||||||||| |||
Sbjct 301 ATTGATAAATCACTTCCGACTGATCCCAAGTTCAAGGACCTCTTCGAGAACTTCTTTAAG 360
Query 361 GCTGTTTACGTTCCAGTAGATTTCAAATCAAAGGCTGAAGAAGTGCGTATA-GAGGTGAA 419
|||||||| ||||||||||||||| |||| |||||||||||||||||| | ||||||||
Sbjct 361 GCTGTTTATGTTCCAGTAGATTTCCGATCAGAGGCTGAAGAAGTGCGTA-AGGAGGTGAA 419
Query 420 TTCATGGGTTGAACATCACACCAATAATCTCATCAAGAATCTTCTTCCTGATGGATCCGT 479
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 420 TTCATGGGTTGAACATCACACCAATAATCTGATCAAGGATCTTCTTCCTGATGGATCCGT 479
Query 480 GACAAGCCTAACCGACAAGATTTACGCAAACGCATTGTATTTCAAGGGAGCTTGGAAGAG 539
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 480 GACAAGCCTAACCAACAAGATTTACGCAAACGCATTGTCTTTCAAGGGAGCTTGGAAAAG 539
Query 540 ACCATTTGAAAAGTACTGTACAAGAGACAGA-GACTTCCACCTTGTCAATGGCACTA-CA 597
||||||||||||||||| ||||||||| | | |||||| |||||||||||||||| | ||
Sbjct 540 ACCATTTGAAAAGTACTATACAAGAGATA-ATGACTTCTACCTTGTCAATGGCAC-ATCA 597
Query 598 GTCTCTGTACCATTCATGACCAGCTATGAGAACCAATACGTAAGAGCTTATGACGGTTTC 657
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 598 GTCTCTGTGCCATTCATGTCCAGCTATGAGAACCAATACGTAAGAGCTTATGACGGTTTC 657
Query 658 AAGGTCCTCAGGCTCCCTTACCGACGAGGCAGCGATGATACTAATCGTAAATTCTCAATG 717
|||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 658 AAGGTCCTCAGGCTTCCTTACCAACGAGGCAGTGATGATACCAATCGTAAATTCTCAATG 717
Query 718 TATTTCTATCTTCCGGACAAGAAAGATGGATTGGATAATCT-TGTGGAGAAAATGGTATC 776
||||||||||| || ||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 718 TATTTCTATCTCCCAGACAAGAAAGATGGATTGGATGATCTCT-TGGAGAAAATGGCATC 776
Query 777 TACACGTGGATTCTTGGATAGTCACATTCCGACATACAGAGATGCACTTGAGGAATTTAG 836
||||| |||||||||||||||||||||||||||||| ||||||| ||||||| |||||||
Sbjct 777 TACACCTGGATTCTTGGATAGTCACATTCCGACATATAGAGATGAACTTGAGAAATTTAG 836
Query 837 AATTCCAAAGTTTAAGATCGAATTCAGTTTTTCTGTTACAAGCATTTTGGATCGATTGGG 896
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 837 AATTCCAAAGTTTAAGATCGAATTCGGTTTTTCTGTTACAAGCGTTTTGGATCGATTGGG 896
Query 897 ACTGCGTTCAATGTCAATGTACCATAAAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGA 956
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTGCGTTCAATGTCAATGTACCATAAAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGA 956
Query 957 AGCTGCGGCTGCTACTGCTGATG-AGGGTCAAGGTTGTGCTCTTGAGTTCGAGGAGCCTC 1015
||||||||||||||||||||||| || | |||||| ||||||| || | ||||||||
Sbjct 957 AGCTGCGGCTGCTACTGCTGATGGAGATTGT-GGTTGTTCTCTTGATTTTGTGGAGCCTC 1015
Query 1016 CTAAGAAGATAGATTTTGTGGCTGATCATCCATTTCTTTTCTTGATTCGAGAAGACAAAA 1075
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1016 CTAAGAAGATAGATTTTGTGGCCGATCATCCATTTCTTTTCTTGATTCGAGAAGAAAAAA 1075
Query 1076 CTGGAACCGTTTTGTT-G--G-TCAAATCTTTAATCCTTCGGAATCTTGTTCGGGAGCTA 1131
|||||||||||||||| | | ||| |||||| ||||||||| | ||||||||||| |||
Sbjct 1076 CTGGAACCGTTTTGTTCGTTGGTCAGATCTTTGATCCTTCGGGACCTTGTTCGGGATCTA 1135
Query 1132 ATTATTCGGACTCAGATGACTATTAA 1157
||| ||||||||||||||||||||
Sbjct 1136 ATT---CGGACTCAGATGACTATTAA 1158
> AT1G65385.1 | Symbols: | pseudogene, putative serpin, blastp
match of 51% identity and 9.6e-61 P-value to GP|26224736|gb|AAN76362.1||AY158152
serpin-like protein {Citrus x paradisi}
| chr1:24289658-24291024 REVERSE LENGTH=1367
Length=1367
Score = 850 bits (460), Expect = 0.0
Identities = 662/753 (88%), Gaps = 39/753 (5%)
Strand=Plus/Plus
Query 391 AAGGCTGAAGAAGTGCGTATA-GAGGTGAATTCATGGGTTGAACATCACACCAATAATCT 449
||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 631 AAGGCTGAAGAAGTGCGTA-AGGAGGTGAATTCATGGGTTGAAGATCACACCAATAATCT 689
Query 450 CATC-AAGAATCTTCTTCCT-GATGGATCCGTGACAAGCCTAACCGACAAGATTTACGCA 507
|||| ||| ||||||||||| | || ||| |||||||||| |||| ||||||||||||||
Sbjct 690 CATCAAAG-ATCTTCTTCCTCG-TGAATCTGTGACAAGCCGAACCAACAAGATTTACGCA 747
Query 508 AACGCATTGTATTTCAAGGGAGCTTGGAAGAGACCATTTGAAAAGTACTGTACAAGAGAC 567
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 748 AACGCATTGTATTTCAAGGGAGCTTGGAAGAGACCATTTGAAAAGTACTATACAAAAGAC 807
Query 568 AGAGACTTCCACCTTGTCAATGGCACTACAGTCTCTGTACCATTCATGACCAGCTATGAG 627
|||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 808 AGAGACTTCCACATGGTCAATGGCACTACAGTCTCTGTGCCATTCATGACCAGCTACGAG 867
Query 628 AAC-CAATACGTAAGAGCTTATGACGGTTTCAAGGTCCTCAGGCTCCCTTACCGACGAGG 686
|| ||| | |||||||||||| |||||||| | ||| | ||||||||||||||
Sbjct 868 -ACACAAAAAGTAAGAGCTTATAACGGTTTC-A-------AGG-T-CCTTACCGACGAGG 916
Query 687 CAGCGATGATACTAATCGTAAATTCTCAATGTATTTCTATCTTCCGGACAAGAAAGATGG 746
| | |||||||| || || ||||||||||||||||||||||| || ||||||||||||||
Sbjct 917 CCGTGATGATACCAACCGCAAATTCTCAATGTATTTCTATCTCCCTGACAAGAAAGATGG 976
Query 747 ATTGGATAATCT-TGTGGAGAAAATGGTATCTACACGTGGATTCTTGGATAGTCACATTC 805
||||||| |||| | || ||||||| | |||||||| |||||||||||||||||||||||
Sbjct 977 ATTGGATTATCTCT-TGAAGAAAATAGCATCTACACCTGGATTCTTGGATAGTCACATTC 1035
Query 806 CGACATACAGAGATGCACTTGAGGAATTTAGAATTCCAAAGTTTAAGATCGAATTCAGTT 865
||| ||||| || || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1036 CGAGATACAAAGTTGAACTTGAGGAATTTAGAATTCCAAAGTTTAAGATCGAATTCGGTT 1095
Query 866 TTTCTGTTACAAGCATTTTGGATCGATTGGGA---CTGCGTTCAATGTCAATGTACCATA 922
|||||| ||||||| ||||| ||| | ||||| |||| |||| |||||||||||||||
Sbjct 1096 TTTCTGCTACAAGCGTTTTGAATCAAGTGGGAGTACTGCATTCAGTGTCAATGTACCATA 1155
Query 923 AAGCTTGTGTCGAGATTGATGAAGAAGGTGCTGAAGCTGCGGCTGCTACTGCTGATG-AG 981
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1156 AAGCTTGTGTCGAGATCGATGAAGAAGGTGCTGAAGCTGCGGCTGCAACTGCTGATGTAG 1215
Query 982 G-G-TCAAGGTTGTGCTCTTGAGT-TCGAGG--AGCCTCCTAAGAAGATAGATTTTGTGG 1036
| | | |||||||||||||| | | | || | |||||||||||||||||||||||||
Sbjct 1216 AAGATGACGGTTGTGCTCTTGA-TATGG-GGCCA-CCTCCTAAGAAGATAGATTTTGTGG 1272
Query 1037 CTGATCATCCATTTCTTTTC-TTGATTCGAGAAGACAAAACTGGAACCGTTTTGTT---- 1091
|||||||||||||| ||||| || || |||||||||||||| || |||||||||||
Sbjct 1273 CTGATCATCCATTTATTTTCCTT-ATCCGAGAAGACAAAACCGGGACCGTTTTGTTCTTT 1331
Query 1092 GGTCAAATCTTTAATCCTTCGGAAT-CTTGTTC 1123
||||| |||| || |||||||||| |||||||
Sbjct 1332 GGTCAGCTCTTCAAACCTTCGGAATTCTTGTTC 1364
Score = 403 bits (218), Expect = 2e-111
Identities = 328/381 (86%), Gaps = 7/381 (2%)
Strand=Plus/Plus
Query 16 GCTATGAAGAACCAAACCGAAGTCGCGATGATCCTTTCCCGGCACTTCTTAACTTCCGCG 75
||||||||||| |||| ||| ||||||||||||||| ||||| ||||| |||| | |
Sbjct 16 GCTATGAAGAAGCAAAACGACGTCGCGATGATCCTTGGGAGGCACGTCTTATCTTCTGAG 75
Query 76 CCGAAAGACTCTAACATCATCTTCTCACCGGCGTCAATAAACTCAGCGATCACCATGCAC 135
|| || |||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 76 TCG---GAATCTAACGTCATCTTCTCGCCGGCGTCAATAAACTCTGCGATCACCATGCAC 132
Query 136 GCCGCTGGTCCCGGCGGT-GATGTAGTCTCCGGTCAATTCCTCTACTTACTCAGATCTTC 194
||||||||| |||| ||| | | ||||| ||||| || |||||| ||| |||||||||||
Sbjct 133 GCCGCTGGTTCCGGAGGTGGCT-TAGTCGCCGGTGAAATCCTCTCCTTCCTCAGATCTTC 191
Query 195 TTCAATCGATGAGCTCAAAACCGTCTTCCGAGAACTAGCCTCCGTTGTCTACGCCGACAG 254
||||||||||||||||||| ||||||||||||||||| | ||| | ||||||||||||||
Sbjct 192 TTCAATCGATGAGCTCAAATCCGTCTTCCGAGAACTATCATCCATCGTCTACGCCGACAG 251
Query 255 CAGCGGC-AGCGGTGGCCCAAAGATAACGGCGGCGAATGGCCTCTGGATTGATAAATCAC 313
||||| | || || ||||||||||| | ||||| |||||||||||||||||| |||||||
Sbjct 252 CAGCG-CTAGTGGCGGCCCAAAGATGAGGGCGGTGAATGGCCTCTGGATTGAGAAATCAC 310
Query 314 TTCCCACTGATCCCAAGTTCAAGGATCTATTGGAGAACTTCTTCAAGGCTGTTTACGTTC 373
| || | ||||||||| | ||||| ||| || ||||||||||||||||||||||||||||
Sbjct 311 TACCGATTGATCCCAAATACAAGGCTCTCTTCGAGAACTTCTTCAAGGCTGTTTACGTTC 370
Query 374 CAGTAGATTTCAAATCAAAGG 394
| ||||||||| ||||||||
Sbjct 371 CCGTAGATTTCCGATCAAAGG 391
> AT1G64035.1 | Symbols: | pseudogene, putative serpin, blastp
match of 55% identity and 1.1e-82 P-value to GP|26224736|gb|AAN76362.1||AY158152
serpin-like protein {Citrus x paradisi}
| chr1:23755496-23757736 REVERSE LENGTH=2241
Length=2241
Score = 374 bits (202), Expect = 1e-102
Identities = 580/751 (77%), Gaps = 72/751 (10%)
Strand=Plus/Plus
Query 396 TGAAGAAGTGCGTATA-GAGGTGAATTCATGGG--TTGAACATCACACCAATAATCTCAT 452
||||||||||||| | ||||||||||| |||| || || |||||||||| | ||||
Sbjct 1518 TGAAGAAGTGCGT-GAGGAGGTGAATTCTTGGGCATT--ACGTCACACCAATGGTATCAT 1574
Query 453 C-AAGAATCTTCTTCCTGATGGATCCGTGACAAGCCTAACCGACAAGATTTACGCAAACG 511
| ||| ||||||| ||| ||||||||| |||||| |||| |||||| | |||||
Sbjct 1575 CAAAG-ATCTTCTACCTCCTGGATCCGTTACAAGCGAAACCTTGTGGATTTATGGAAACG 1633
Query 512 CATTGTATTTCAAGGGAG-CTTGGAAGAGACCATT-TGAAAAGT-ACTGTACAAGAGACA 568
||||||| ||||| |||| || |||||| | ||| | | |||| | || || || |||
Sbjct 1634 CATTGTACTTCAAAGGAGCCTGGGAAGACA-AATTCT-ATAAGTCAATG-AC--GAAACA 1688
Query 569 GAGA-C-TTCCACCTTGTCAATGGCACTAC-AGTCTC-TGTACCATTCATGAC-CAGCT- 622
| | | ||| ||||||||||||||| || ||| | ||| ||||||||| | ||||
Sbjct 1689 CAAACCTTTCTACCTTGTCAATGGCA-AACAAGT-ACATGTGCCATTCATG-CAAAGCTC 1745
Query 623 ATGAGAA-CCAATACG-TAAGAGCTTATGACGGTTTCAAGGTCCTCAGGCTCCCTTACCG 680
| | || ||||| | |||| ||||| || |||||||||||||| || | || |||||
Sbjct 1746 A-CA-AAGTCAATATGTTAAG-GCTTACGATGGTTTCAAGGTCCTTAGACAACCATACCG 1802
Query 681 ACGAGGCAG-CGATGATACTAA-TCGTAAATTCTCAATGTATTTCTATCTTCCGGACAAG 738
|| |||| | ||||||| || ||| |||||||||||| | |||||| |||||| ||
Sbjct 1803 ACAAGGC-GTTAATGATAC-AAGTCGCCAATTCTCAATGTGTACCTATCTCCCGGACGAG 1860
Query 739 AAAGATGGATTGGATAATCTTGTGGAGAAAATGGTATCTACACG-TGGATTCTTGGATAG 797
||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct 1861 AAAGATGGATTGGATAATCTTGTGGAGAAAATGACATCTACT-GATGGATTCTTGGACAG 1919
Query 798 TCACATTCCGACATACAGAGATGCACTTGAG-GAATTTAGAATTCCAAAGTTTAAGATCG 856
||||||||||| | |||| || | ||| | ||||| |||||||||||||||||||| |
Sbjct 1920 TCACATTCCGAGTTGGAGAGTTGAAGTTG-GTGAATTCAGAATTCCAAAGTTTAAGATTG 1978
Query 857 AATTCAGTTTTTCTG-TTACAAGCATTTTGGATCGA-TTGGGACTGCGTTCAATGT--CA 912
||||| ||||| | || ||||| |||| || || || | | || || | ||| ||
Sbjct 1979 AATTCGGTTTTGAAGCTT-CAAGCGTTTTCAAT-GACTTTG--C-GC-TTGA-TGTATCA 2031
Query 913 ATGTACCATAAAGCT-TG-TGTCGAGATTGATGAAGAAGGTGCTGAAGCTGCGGCTGCTA 970
| ||||| |||||| || | | |||||||||||||||||| ||||||||||||||||||
Sbjct 2032 TTATACCAAAAAGCTATGAT-T-GAGATTGATGAAGAAGGTACTGAAGCTGCGGCTGCTA 2089
Query 971 CTGCTGATGAG--GGTCAAGGTTGTGCTCTTG-AG--TTCG-AGGAGCCTCCTAAGAAGA 1024
||||| | || ||| | ||||| || | || || ||| |||||| |
Sbjct 2090 CTGCTC-T-AGTTGGT---GCTTGTGG-CT-GCAGCCTTTATAGG--CCTCCTCCTCCCA 2140
Query 1025 TAGATTTTGTGGCTGATCATCCATTTCTTTTCTTGATTCGAGAAGACAAAACTGGAACCG 1084
||||||||||||| |||||||||||| ||||||| ||| ||||||||||||| ||||| |
Sbjct 2141 TAGATTTTGTGGCAGATCATCCATTTTTTTTCTTTATTAGAGAAGACAAAACCGGAACTG 2200
Query 1085 TTTTGTT-G--G-TCAAATCTTTAATCCTTC 1111
||||||| | | ||||||||| |||||||
Sbjct 2201 TTTTGTTCGCTGGTCAAATCTTCGATCCTTC 2231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5