BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg474954

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64020.1 | Symbols:  | Serine protease inhibitor (SERPIN) fa...   525    1e-148


> AT1G64020.1 | Symbols:  | Serine protease inhibitor (SERPIN) 
family protein | chr1:23751756-23752121 REVERSE LENGTH=366
Length=366

 Score =  525 bits (284),  Expect = 1e-148
 Identities = 340/366 (93%), Gaps = 7/366 (2%)
 Strand=Plus/Plus

Query  1    ATGGACG-TGAAAGAAGCTATGAAGAAGCAAAACGAAGTCGCGATGATCCTTTCGTGGCA  59
            ||||| | || ||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1    ATGGAGGATG-AAGGAGCTATGAAGAAGCAAAACGAAGTCGCGATGATTCTTTCGTGGCA  59

Query  60   TCTCTTCTCTACTGTAGCCAAACACTCTAACAACGTTTTCTCGCCGGCGTCAATCAAC-G  118
            |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct  60   TCTCTTCTCTACTGTAGCCAAACACTCTAACAACGTTTTCTCACCGGCGTCAAT-AACCG  118

Query  119  CAGCGTTCACCATGATGGCTTCTGGTCCCGGCAGTTCTTCGATTTCCGATCAAATCCTCT  178
            ||| ||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||
Sbjct  119  CAGTGTTCACCATGATGGCCTCTGGCCCCGGCAGTTCTTTGATCTCCGATCAAATCCTCT  178

Query  179  CCTTCCTTAGATCTTCTTCTATCGATGAGCTCAACTCCGTCTTCCGCGTCATTACTACTG  238
            |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CCTTCCTCGGATCTTCTTCTATCGATGAGCTCAACTCCGTCTTCCGCGTCATTACTACTG  238

Query  239  TAGTCTTTGCTGACGATAGTAATATAGGCGGCCCAACAATCAAAGTGGCGAATGGCGCCT  298
            |   ||| ||||||| ||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct  239  T---CTTCGCTGACGGTAGTAATATAGGCGGCCCAACGATCAAAGTGGCAAATGGCGCTT  295

Query  299  GGATCGATCAATCTTTCTCGATTGATTCGTCTTCTAAGAATCTCTTCGAGAtttttttCA  358
            |||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct  296  GGATCGATCAATCTTTCTCGATTGATTCGTCTTCCAAGAATCTCTTTGAGAATTTTTTCA  355

Query  359  AAGCTG  364
            ||||||
Sbjct  356  AAGCTG  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5