BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474955
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64010.1 | Symbols: | Serine protease inhibitor (SERPIN) fa... 881 0.0
AT2G35590.1 | Symbols: | pseudogene, serpin (serine protease i... 78.7 6e-14
AT2G35570.1 | Symbols: | pseudogene, serpin (serine protease i... 78.7 6e-14
AT2G35580.1 | Symbols: | Serine protease inhibitor (SERPIN) fa... 75.0 7e-13
> AT1G64010.1 | Symbols: | Serine protease inhibitor (SERPIN)
family protein | chr1:23750884-23751441 REVERSE LENGTH=558
Length=558
Score = 881 bits (477), Expect = 0.0
Identities = 531/558 (95%), Gaps = 0/558 (0%)
Strand=Plus/Plus
Query 1 ATGACAAAAGACCGCGACTTTCACCTTCTCAATGGAACCTTAGTTTATGTGCCTTTCATG 60
||||| |||||||| |||||||||||| ||||||| || | ||||| |||| || |||||
Sbjct 1 ATGACGAAAGACCGAGACTTTCACCTTATCAATGGGACATCAGTTTCTGTGTCTCTCATG 60
Query 61 AGCAGCTATAAGGACCAATACATGGAGGCTTATGATGATTTCAAGGTCCTAAAGCTCCCA 120
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 61 AGCAGCTATAAGGACCAATACATAGAGGCTTATGATGGTTTCAAGGTCCTAAAGCTCCCA 120
Query 121 TTTCGACAAGGTGATGATACCAGTCGAAGTTTCTCTATGCATTTCTATCTCCCTGATGAG 180
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 TTTCGACAAGGTAATGATACCAGTCGAAACTTCTCTATGCATTTCTATCTCCCTGATGAG 180
Query 181 AAAGATGGGTTGGATAAACTTGTGGAGAAAATGGCATCAAGTCTTGGTTTCTTGGATAGT 240
|||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AAAGATGGTTTGGATAATCTTGTGGAGAAAATGGCATCAAGTGTTGGTTTCTTGGATAGT 240
Query 241 CATATTCCGAGTCAAAAAGTTAAGGTTGGTGAATTTAGAATCCCAAAGTTTAAGATCGAA 300
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 241 CATATTCCGAGTCAAAAAGTTAAAGTTGGTGAATTCGGAATCCCAAAGTTTAAGATCGAA 300
Query 301 TTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTAGGATTGGATGAAATGGCTTTGTAC 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 TTCGGATTCTCGGCTTCAAGGGCTTTCAATAGATTGGGATTGGATGAAATGGCTTTGTAC 360
Query 361 CAAAAATCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTCCTGTT 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 CAAAAAGCTTGTGTTGAGATTGATGAAGAAGGTGCTGAAGCTATTGCCGCAACTGCTGTT 420
Query 421 GTTGGAGGCTTTGGATGTTCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTT 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTGGAGGCTTTGGATGTGCTTTTGTTAAGAGGATAGATTTTGTTGCTGATCATCCATTT 480
Query 481 CTTTTCATGATTAGAGAAGACAAAACCGGAACCGTTTTGTTCGTTGGTCAGATTTTTGAT 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 481 CTTTTCATGATTAGAGAAGACAAAACCGGAACAGTTTTGTTCGTTGGTCAGATCTTTGAT 540
Query 541 CCTTCTAATTCTTCTTAG 558
|||||| |||||||||||
Sbjct 541 CCTTCTTATTCTTCTTAG 558
> AT2G35590.1 | Symbols: | pseudogene, serpin (serine protease
inhibitor), putative, similar to protein zx (Hordeum vulgare
subsp. vulgare) GI:19071, serpin (Triticum aestivum) GI:1885346;
contains Pfam profile PF00079: Serpin (serine protease
inhibitor); this is very likely a pseudogene.; blastp match
of 52% identity and 2.2e-73 P-value to GP|26224736|gb|AAN76362.1||AY158152
serpin-like protein {Citrus x paradisi} | chr2:14938536-14939921
REVERSE LENGTH=1386
Length=1386
Score = 78.7 bits (42), Expect = 6e-14
Identities = 147/196 (75%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 4 ACAAAAG-ACCGCGACTTTCACCTTCTCAATGGAACCTTAGTTTATGTGCCTTTCATGA- 61
||||||| | | ||||||||||||||| |||||||| ||| |||||| |||||||
Sbjct 822 ACAAAAGAATC-CGACTTTCACCTTCTTGATGGAACCAAAGTACGTGTGCCCTTCATGAC 880
Query 62 -GCAG-CTA-TAAGGACCAATACATGGAGGCTTATGATGATTTCAAGGTCCTAAAGCTCC 118
| | | | || || || | | | || | ||| || | |||||| ||||| || || |
Sbjct 881 CGGTGCCCACGAA-GA-CAGT-C-TTGATGTTTACGAAGCTTTCAAAGTCCTCAATCTAC 936
Query 119 CATTTCGACAAGG-TGATG-ATACCAGTCGAAGTTTCTCTATGCATTTCTATCTCCCTGA 176
| | | || |||| | | | | |||||| ||||||||||||| |||||||||||||
Sbjct 937 CGTATAGAGAAGGACG-CGAAGA-CAGTCGTGGTTTCTCTATGCAAATCTATCTCCCTGA 994
Query 177 TGAGAAAGATGGGTTG 192
||||||||||||||||
Sbjct 995 TGAGAAAGATGGGTTG 1010
> AT2G35570.1 | Symbols: | pseudogene, serpin (serine protease
inhibitor) family, similar to phloem serpin-1 (Cucurbita maxima)
GI:9937311; blastp match of 49% identity and 9.9e-85 P-value
to GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi} | chr2:14931139-14933175 REVERSE LENGTH=2037
Length=2037
Score = 78.7 bits (42), Expect = 6e-14
Identities = 147/196 (75%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 4 ACAAAAG-ACCGCGACTTTCACCTTCTCAATGGAACCTTAGTTTATGTGCCTTTCATGA- 61
||||||| | | ||||||||||||||| |||||||| ||| |||||| |||||||
Sbjct 794 ACAAAAGAATC-CGACTTTCACCTTCTTGATGGAACCAAAGTACGTGTGCCCTTCATGAC 852
Query 62 -GCAG-CTA-TAAGGACCAATACATGGAGGCTTATGATGATTTCAAGGTCCTAAAGCTCC 118
| | | | || || || | | | || | ||| || | |||||| ||||| || || |
Sbjct 853 CGGTGCCCACGAA-GA-CAGT-C-TTGATGTTTAAGAAGGTTTCAAAGTCCTCAATCTAC 908
Query 119 CATTTCGACAAGG-TGATG-ATACCAGTCGAAGTTTCTCTATGCATTTCTATCTCCCTGA 176
| | | || |||| | | | | |||||| ||||||||||||| |||||||||||||
Sbjct 909 CGTATAGAGAAGGACG-CGAAGA-CAGTCGTGGTTTCTCTATGCAAATCTATCTCCCTGA 966
Query 177 TGAGAAAGATGGGTTG 192
||||||||||||||||
Sbjct 967 TGAGAAAGATGGGTTG 982
> AT2G35580.1 | Symbols: | Serine protease inhibitor (SERPIN)
family protein | chr2:14933828-14935482 REVERSE LENGTH=1125
Length=1125
Score = 75.0 bits (40), Expect = 7e-13
Identities = 48/52 (92%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 141 CAGTCGAAGTTTCTCTATGCATTTCTATCTCCCTGATGAGAAAGATGGGTTG 192
|||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 696 CAGTCGTAGTTTCTCAATGCAAATCTATCTCCCTGATGAGAAAGATGGGTTG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26774800351
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5