BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474956
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64000.1 | Symbols: WRKY56, ATWRKY56 | WRKY DNA-binding prot... 1221 0.0
AT5G41570.1 | Symbols: WRKY24, ATWRKY24 | WRKY DNA-binding prot... 431 6e-120
> AT1G64000.1 | Symbols: WRKY56, ATWRKY56 | WRKY DNA-binding protein
56 | chr1:23747304-23749053 FORWARD LENGTH=888
Length=888
Score = 1221 bits (661), Expect = 0.0
Identities = 784/842 (93%), Gaps = 14/842 (2%)
Strand=Plus/Plus
Query 1 ATCCTTATAACATTTCTTCTCCTCTTCTCCTTCTCCCTCTTATGCAAACATATATTTTTA 60
||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1 ATCCTTATAACCTTTCTTCTCCTCTTCTCCTTCTTCCTCTTATGCAAACATATATTTACA 60
Query 61 TAAATACA-A-ATACATATACT-------A-AGAGAGAGATCTAG-ATAGAGAGTGAAAG 109
|||| ||| | ||| ||||| | | |||||||||||||| | ||| ||||||||
Sbjct 61 TAAACACACACATATATATAGTAAGAGAGAGAGAGAGAGATCTAGCA-AGATAGTGAAAG 119
Query 110 CTTCATAATCAATGGAAGGGGTTGACAATACAAACCCGATGTTAACCCTAGAAGAAGGCG 169
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 120 CTTCATAATCAATGGAAGGGGTTGACAACACAAATCCTATGTTAACCCTAGAAGAAGGCG 179
Query 170 AAAACAACAATCCTTTTTCTTCCTTTGATGACAAAACCTTAATGATGATGGCTCCTTCAT 229
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 180 AAAACAACAATCCTTTTTCTTCCTTAGATGACAAAACATTAATGATGATGGCTCCTTCGT 239
Query 230 TAATGTTTTCCGGAGATGTAGGTTCATCTTCTTCTTCTTGTTCTCTATCAAGTTTTCATC 289
|||| ||||| || ||||||||| ||||||||||||||||| ||| | || ||| |||||
Sbjct 240 TAATCTTTTCGGGCGATGTAGGTCCATCTTCTTCTTCTTGTACTCCAGCAGGTTATCATC 299
Query 290 TATCTGCTCAGCTGGAGAATTTTCGAGGAGGTGGAGGAGATATGGGAGGATTAGTGAGTA 349
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TATCTGCTCAGCTGGAGAACTTTCGAGGAGGTGGAGGAGAGATGGGAGGATTAGTGAGTA 359
Query 350 ATAATAGCAATAATAGTGATCATAATAAGAATTGCAACAAAGGAAAAGGGAAGAAAACTT 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 ATAATAGCAATAATAGTGATCATAATAAGAATTGCAACAAAGGAAAAGGGAAGAGAACTT 419
Query 410 CGGCAATGCAGAGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTT 469
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGCAATGCAGAGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTT 479
Query 470 ATCGTTGGCGAAAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATCGTTGGCGAAAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATT 539
Query 530 ACAGATGTACATACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATC 589
| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 540 ATAGATGTACATACCACACATGCAACGTGAAGAAACAAGTGCAAAGACTGGCAAAAGATC 599
Query 590 CAAACGTCGTTGTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGG 649
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CAAACGTTGTCGTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGG 659
Query 650 AGACTCTTAGTCCTCTCCTTAGGCAACTTCAGTTCCTCTCCAGAGTTTCTGATCTGTGAT 709
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 660 AGACTCTTAGCCCTCTCCTTAGGCAACTTCAGTTCCTCTCAAGAGTTTCTGATCTGTAAT 719
Query 710 TATTGAATGTTAATTGGTGGTGTAATTA-ATTAATTATGCTTTAATCTCTCCATTGACCC 768
||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 720 TATTGAATGTTAATTAGTGGTGTAAT-ACATTAATTATGCTTTAATCTCTCCATTGACCC 778
Query 769 CCAATCTCCCAAGAGATAAATGTATAGAACAAATCTCAGATCATAGATGCTTTATGTTTA 828
|||||||| |||||| |||||||||||| |||||||| | |||| |||||||| |||||
Sbjct 779 TCAATCTCCAAAGAGACAAATGTATAGAATAAATCTCATAACATACATGCTTTAGGTTTA 838
Query 829 TT 830
||
Sbjct 839 TT 840
> AT5G41570.1 | Symbols: WRKY24, ATWRKY24 | WRKY DNA-binding protein
24 | chr5:16624214-16625977 FORWARD LENGTH=834
Length=834
Score = 431 bits (233), Expect = 6e-120
Identities = 296/326 (91%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 421 AGGATAGCTTTTCATACAAGGAGTGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 480
||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 259 AGGATTGCGTTTCATACGAGGAGCGATGATGATGTTCTTGATGATGGTTATCGTTGGCGA 318
Query 481 AAGTACGGTCAGAAATCTGTCAAGAACAATGCTCATCCCAGGAGCTATTACAGATGTACA 540
|| || || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 319 AAATATGGGCAGAAATCTGTCAAGCACAATGCTCATCCCAGGAGCTATTACAGATGTACG 378
Query 541 TACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TACCACACATGCAACGTGAAGAAACAAGTGCAGAGATTGGCAAAAGATCCAAACGTCGTC 438
Query 601 GTAACAACCTACGAAGGTGTTCATAATCATCCTTGTGAGAAGCTCATGGAGACTCTTAGT 660
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
Sbjct 439 GTAACGACCTACGAAGGCGTTCATAACCATCCTTGTGAGAAGCTCATGGAGACTCTTAAT 498
Query 661 CCTCTCCTTAGGCAACTTCAGTTCCTCTCCAGAGTT-TCTGATCTGTGATTAT-TGAATG 718
||||| || |||||||| |||||||||||||| || ||| |||| ||| ||| | ||||
Sbjct 499 CCTCTTCTCAGGCAACTCCAGTTCCTCTCCAGT-TTCTCTAATCTTTGAATATAT-AATG 556
Query 719 --TTAATTGGTGGTGTAATTAATTAA 742
|||||| ||||||||||| ||||
Sbjct 557 GCTTAATTAATGGTGTAATTACTTAA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41342702981
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5