BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474957
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:237428... 2316 0.0
AT1G63980.1 | Symbols: | D111/G-patch domain-containing protei... 403 2e-111
> AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:23742842-23745374
REVERSE LENGTH=1656
Length=1656
Score = 2316 bits (1254), Expect = 0.0
Identities = 1472/1575 (93%), Gaps = 23/1575 (1%)
Strand=Plus/Plus
Query 1 AAAATGGAGGAAAGTTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 AAAATGGAGGAAAGTTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCT 80
Query 61 TACGCTGACATTCTTCGTCCTCACGAAGCTCGTGCTAGAATCGAAGGTTCTGTTCTCAAT 120
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 81 TACGCTGACATTCTTCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAAT 140
Query 121 CTTTTCCGAATTTTGAATTCTCCAGATTCAGCCATCTCCGATCTCTCTCTGATCAATGGG 180
|| ||||||||||||| || |||||| |||| |||||||||||||||||||||||| ||
Sbjct 141 CTCCTCCGAATTTTGAACTCCCCAGATCCAGCTATCTCCGATCTCTCTCTGATCAATAGG 200
Query 181 AAGAGAAGCAATAGTTGTATAAACCAAGGGATACTCACAGATGTTTCATATATATTCCTC 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 201 AAGAGAAGCAATAGTTGTATAAACAAAGGGATACTCACAGATGTTTCATATATATTCCTC 260
Query 241 TCTACTTCATTTACTAAGAGTTCATTGACGAATGCTAAAACAGCTAAAACTTTTGTTCGT 300
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 261 TCTACTTCGTTTACTAAGAGTTCATTGACGAATGCTAAAACAGCTAAAGCTTTTGTTCGT 320
Query 301 GTGTGGAAAGTTATGGAAATATGCTTCCAGATTCTGCTCCAAGAGAAACGAGTGACACAA 360
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 321 GTGTGGAAAGTTATGGAAATATGCTTTCAGATTCTGCTTCAAGAGAAACGAGTCACACAA 380
Query 361 AGAGAGCTCTTCTATAAATTGCTTTGTGATTCACCTGATTATTTTTCATCTCAGATTGAA 420
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 381 AGAGAGCTCTTCTATAAGTTGCTTTGTGATTCACCTGATTACTTTTCATCTCAGATTGAA 440
Query 421 GTTAACAGAACTGTCCAAGATGTGGTAGCACTCCTACGTTGCAGTAGATACAGTCTTGGG 480
|||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 441 GTTAACAGAAGTGTCCAAGATGTGGTAGCACTTCTACGTTGTAGTAGATACAGTCTTGGT 500
Query 481 ATTATGGCTTCTAGCAGAGGCCTTGTTGCTGGAAGGTTATTTCTACAAGAACCAGGTAAG 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 ATTATGGCTTCAAGCAGAGGCCTTGTTGCTGGAAGGTTATTTCTACAAGAACCAGGTAAG 560
Query 541 GAAGCTGTAGATTGTTCGGCCTGTGGTTCTTCAGGTTTCACTATAACCGGAGACTTGAAT 600
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 561 GAAGCTGTAGATTGTTCGGCCTGTGGTTCTTCAGGTTTTGCTATAACTGGAGACTTGAAT 620
Query 601 TTGCTAGACAACACCATCATGAGAAGTGATGCACGGTATATCATTATTGTGGAAAAGCAT 660
||||||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 621 TTGCTAGACAATACCATCATGAGAACTGATGCTCGTTATATCATTATTGTGGAAAAGCAT 680
Query 661 GCGATTTTTCATCGGCTTGTGGAAGATCGTGTGTTCAATCACATTCCTTGCGTGTTCATC 720
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GCGATCTTTCATCGGCTCGTGGAAGATCGTGTGTTCAATCACATTCCTTGCGTGTTCATC 740
Query 721 ACTGCGAAAGGGTATCCGGATATTGCCACAAGGTTTTTCCTTCACCGGATGAGCACAACA 780
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 741 ACAGCGAAAGGGTATCCGGATATTGCCACAAGGTTTTTCCTCCACCGGATGAGCACAACT 800
Query 781 TTTCCTAATCTGCCAATTCTTGCTCTAGTAGATTGGAATCCAGCTGGGTTAGCTATACTA 840
|||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 801 TTTCCTGATCTGCCAATTCTTGTTCTAGTTGATTGGAATCCAGCTGGGTTAGCTATACTA 860
Query 841 TGCACCTTCAAGTTTGGAAGCATAGGAATGGGTCTTGAAGCATACAGATATGCTTGCAAT 900
|||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 861 TGCACCTTCAAGTTTGGAAGCATAGGGATGGGACTTGAAGCATACAGATACGCTTGCAAT 920
Query 901 GTGAAGTGGATTGGTCTCCGAGGAGATGATCTGAATCTGATACCAGACGAGTCTTTGGTT 960
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 921 GTGAAGTGGATTGGTCTCCGAGGAGATGATCTGAATCTGATACCAGAAGAGTCTTTGGTT 980
Query 961 CCCTTAAAGCCAAAGGATTCACAGATTGCTAAGAGCTTATTGTCCTCCAAAATCTTGCAG 1020
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 981 CCCTTAAAGCCAAAAGATTCACAGATTGCTAAGAGCTTATTGTCCTCCAAAATATTGCAG 1040
Query 1021 GATAACTACAGAGACGAGTTGTCACTGATGGTGCAAACTGGTAAAAGAGCGGAAATTGAA 1080
|| ||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1041 GAAAACTACATAGAGGAGTTGTCACTGATGGTTCAAACTGGTAAAAGAGCGGAAATTGAA 1100
Query 1081 GCTCTGTATTGTCATGGTTATAATTATCTCGGTAAATATATAGCCACCAAGATCGTGCAG 1140
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1101 GCTCTCTATTGTCATGGTTATAATTATCTCGGTAAATATATAGCTACCAAGATCGTGCAA 1160
Query 1141 GGCAAATACATATAACAAATCAAACACCAGCATGTAAGATTTTCTACCAAT-----T--- 1192
||||||||||||||||| | |||||||| |||||||| | ||| |||||| |
Sbjct 1161 GGCAAATACATATAACACTTAAAACACCAACATGTAAGGTCTTCCACCAATAAAGATGCG 1220
Query 1193 T-------ATATTGGTTCTAAATATAAG-GT-TA-CTTATTCAGG-TGAAGTTTTATGCA 1241
| |||||||||| ||||||||| | || |||||| ||| ||||||||||||||
Sbjct 1221 TTTGCTTTATATTGGTTCCAAATATAAGAGAGTAACTTATT-AGGGTGAAGTTTTATGCA 1279
Query 1242 AACTCTCATGGAATGTATAAATAGATTACAAACAAATCAAAATTTTCCAAATTGAAGGAT 1301
|||||| || ||||||| ||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1280 AACTCTAATAGAATGTAAAAATAGATTACAATCAAATCAAAATTTTCCAAACTGAAGTAT 1339
Query 1302 GATATTTGTTTACATACGGCATGGTGATGAATTAGTAACAAAACTTGTCCTAATCTCCAC 1361
||| |||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1340 GATCTTTGTTTACATATGGCATTGTGATGATTTAGTAACAAAACTTGTCCTAATCTCCAC 1399
Query 1362 TTTCCTATGCAGGTATAATGATAATTTCAACCAAAAATTGT-GCTCACTTCTTGCTTGAT 1420
|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1400 TTTCCTATGCAGGTATAATGATAATTCCAACCAAAAATTCTCGCTCACTTCTTGCTTGAT 1459
Query 1421 ACAAGACTAATCTTCTTTCCGTCCACAACAAACTTGCCACTTCGCACCAGCTGCAACAAA 1480
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1460 ACAAGACTAATCTTCTTTCCCTCCACAACAAACTTGCCACTTCGCTCCAGCTGCAACAAG 1519
Query 1481 GACGTTAGAACAACATCAGTAAGAATGATAAACTTTGGAACTTTCTGTAGTAAATATGAG 1540
||||||||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||
Sbjct 1520 GACGTTAGAACAATATCAGTAAGAATGACAAACTTTGGAACTTTGTGTAG-AA-TATGAG 1577
Query 1541 AAACTCACTATAAAA 1555
|| | |||| |||||
Sbjct 1578 AATCCCACTTTAAAA 1592
> AT1G63980.1 | Symbols: | D111/G-patch domain-containing protein
| chr1:23740516-23743302 FORWARD LENGTH=1554
Length=1554
Score = 403 bits (218), Expect = 2e-111
Identities = 265/287 (92%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 1191 TTTATATTGGTTCTAAATAT-A-AG-GTTACTTATTCA-GGTGAAGTTTTATGCAAACTC 1246
||||||||||||| |||||| | || || ||||||| | |||||||||||||||||||||
Sbjct 1524 TTTATATTGGTTCCAAATATAAGAGAGTAACTTATT-AGGGTGAAGTTTTATGCAAACTC 1466
Query 1247 TCATGGAATGTATAAATAGATTACAAACAAATCAAAATTTTCCAAATTGAAGGATGATAT 1306
| || ||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||| |
Sbjct 1465 TAATAGAATGTAAAAATAGATTACAATCAAATCAAAATTTTCCAAACTGAAGTATGATCT 1406
Query 1307 TTGTTTACATACGGCATGGTGATGAATTAGTAACAAAACTTGTCCTAATCTCCACTTTCC 1366
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1405 TTGTTTACATATGGCATTGTGATGATTTAGTAACAAAACTTGTCCTAATCTCCACTTTCC 1346
Query 1367 TATGCAGGTATAATGATAATTTCAACCAAAAATTGT-GCTCACTTCTTGCTTGATACAAG 1425
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 1345 TATGCAGGTATAATGATAATTCCAACCAAAAATTCTCGCTCACTTCTTGCTTGATACAAG 1286
Query 1426 ACTAATCTTCTTTCCGTCCACAACAAACTTGCCACTTCGCACCAGCT 1472
||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1285 ACTAATCTTCTTTCCCTCCACAACAAACTTGCCACTTCGCTCCAGCT 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5