BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474967
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63930.1 | Symbols: ROH1 | from the Czech 'roh' meaning 'cor... 2401 0.0
> AT1G63930.1 | Symbols: ROH1 | from the Czech 'roh' meaning 'corner'
| chr1:23727891-23729333 FORWARD LENGTH=1443
Length=1443
Score = 2401 bits (1300), Expect = 0.0
Identities = 1388/1431 (97%), Gaps = 3/1431 (0%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCTTCCTCCTTCAAACAAATCATGAGACCTGCGCAAGATAATCAAGGCTCG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TCTTCTTCTTCTTTCTCCTTCAAACAAATCATGAGACCTGCGCAAGATAATCAAGGCTCG 66
Query 61 TTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 TTCCTTGGCCGGATTAGTATCCGTCGCAACCAATTCGTCGACGTCAACAACGAACAAGAA 126
Query 121 CAAGAAGATCTTGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCT 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 CAAGAAGATCTCGAGCTTTTCCAAAAACACATCGCCGATCGTTTCACCGAGCTTCTTTCT 186
Query 181 CCTCCTCAACCACCACCGTCCGATGAAACAAACACGGTAGCTTCCGTAGCTGCGACGGAG 240
|||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 187 CCTCCTCAACCACCACCGTCAGATGAAATTAACACGGTAGCTTCCGTAGCCGCGACGGAG 246
Query 241 CAGATTATGTCCGTGACTTGGCTTCGTAAGCTAATGGATGTTTTCCTCTGTTGCGAAGCT 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 247 CAGATTATGTCCGTGACTTGGCTTCGTAAGCTGATGGATGTTTTCCTCTGTTGCGAAGCT 306
Query 301 GAATTCAAAGCGATTTTGTTAATGGGCCGTGACCCGACCCAGATTTCTAAACCGCCTTTT 360
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 307 GAATTCAAAGCGATTTTGTTAATGGGTCGTGACCCGACCCAGATTTCTAAGCCGCCTTTT 366
Query 361 GACCGGTTAGTTCCTGAAATGTTAGACCGGTCAATTAAAGCGCTTGACATTTGTACCGCC 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 367 GACCGGTTAGTTCCTGAAATGTTAGACCGGTCGATTAAAGCGCTTGACATTTGTACCGCC 426
Query 421 GTTGTTAACGGAATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTTACG 480
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 427 GTTGTTAACGGTATCGATTCCGTTAGACATTACCAGCGTTTAGCTGAGATTGCTGTGACG 486
Query 481 GCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCGAAACGCGCGTTGGCG 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 487 GCTTTGGAGCAACGTCCGTTAGGTGACGGTAACGTGAGGAGAGCTAAACGCGCGTTGGCG 546
Query 541 AATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AATCTCGTCGTCGCGTTGAGTCTCGAGGATAAAGAGAATGTTAGCGGCGGAGGTGGTGGC 606
Query 601 GGCGGCGGAGGGAACAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGTAGCGGTGGA 660
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 607 GGCGGCGGAGGGAATAAGACGACGGAGAGATCGTGGTCGTTTGGTCGTCGAAGCGGTGGA 666
Query 661 TCATCGGCGGCGAGTAAAGGAGGAGCGACGATTGGTCAGCTTAAATCGTCGTCGTGGGCG 720
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 667 TCATCGGCGGCGAGTAAAGGAGGAGCAACGATTGGTCAGCTCAAATCGTCGTCGTGGGCG 726
Query 721 GTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCGATGACGGCGAATCTAACACCG 780
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||
Sbjct 727 GTTGGGAGAAATTGGTCGGCGGCGAAGCAGATCCACGCAATGACAGCGAATCTTACGCCG 786
Query 781 CCACGTGGCAACGAAGCGGCGGGATTGCCTCAACCGATGTTTATAATGAGCACGGTGATG 840
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 787 CCACGTGGTAACGAAGCGGCGGGATTGCCTCAACCAATGTTTATAATGAGTACGGTGATG 846
Query 841 GTGTTCGTAATGTGGGTGTTAACGGCGGCGGTTCCGTGTCAGGAGAGATCTGGATTAGCG 900
|| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 847 GTTTTCGTAATGTGGGTGCTAACGGCGGCGGTTCCGTGTCAGGAGAGATCAGGATTAGCG 906
Query 901 AATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 AATCATTTACCAGTGCCGCCGAAACATTTGAATTGGGCTCAGAGTTTGATCGGAATCCAT 966
Query 961 GAGAAGATCGGCGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTAATGGAG 1020
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 967 GAGAAAATCGGAGATGAGTGGAAGAAGAAAGAGAAGAAAGGATCTGCTGGATTGATGGAG 1026
Query 1021 GAGATGACGAGGATGGAGAAGCTTGGTCATTCGTTGATGGAATTCGCAGATGGATTTCAT 1080
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1027 GAGATGACGAGGATGGAGAAGCTAGGTCACTCGTTGATGGAATTCGCAGATGGATTTCAT 1086
Query 1081 TATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGCGCAAGTGGCAGAGATGGCGGAG 1140
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 1087 TATCCGGCGGAGAAAGATGCTGCTGAATCTGCGGCGGTGCAAGTGGCGGAGATGGCGGAG 1146
Query 1141 ATATGCCGGAGAATGGAGGAAGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTT 1200
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1147 ATATGCAGGAGAATGGAGGAGGAGCTTGTGCCGTTACAGCAACAGATCAGAGAAGTTTTT 1206
Query 1201 CATAGGATCGTGAGGAGTCGTGCGGAGATTCTTGAGGTGTTGGAGCAAGCCGGGAAAGTT 1260
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1207 CATAGGATCGTGAGGAGTCGTGCGGAGATTCTCGAGGTGTTGGAGCAAGCCGGGAAAGTT 1266
Query 1261 TCGGCGCCAGTTGTGTAAAAGTTTTGAATTATTGGGGATCAAATTCGAAGTTTTGTAATT 1320
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1267 TCGGCGCCAGTTGTGTAAAAGTTTTGAATTATTGGGAATCAATTTCGAAGTTTTGTAATT 1326
Query 1321 CTTTGGGGGCTAATAGGATATTTTATTTTCTTGGTTTCGTCTATTGTTGTTTTTTCTACT 1380
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1327 CTTTGGGGGCTAATAGGATATTTTATTTTCTTGGTTTCGTCTATTGTTGTTTTT-CTATT 1385
Query 1381 TATGGTTGGGCCTTTTAGAACTCTGGACAGGCCCATGTCATATGTCTTTCC 1431
||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1386 TATGGTTGGGC-TTTTAGAACTCTGGACAGGCCCATGTCATATGT-TTTCC 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70632166815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5