BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474968
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63900.2 | Symbols: DAL1 | E3 Ubiquitin ligase family protei... 2303 0.0
> AT1G63900.2 | Symbols: DAL1 | E3 Ubiquitin ligase family protein
| chr1:23716643-23719337 FORWARD LENGTH=1708
Length=1708
Score = 2303 bits (1247), Expect = 0.0
Identities = 1428/1513 (94%), Gaps = 21/1513 (1%)
Strand=Plus/Plus
Query 59 TTCTTTCACTGCTTCTAGTGTCTAATTCTTCAAACTCTTCCTCGATTCATACTCATAGCT 118
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 163 TTCTTTCACTGCTTCTAGTTTCTAATTCTTCAAACTCTTCCTCGATTCATACTCATAACT 222
Query 119 CTCGTTAGCTAATTTCTCATGATCTTCTTCCATCGCTCTGTATTCT-AATCCAGATTCGT 177
||| |||||||||||| ||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 223 CTCATTAGCTAATTTCGCATGATCTTCTTCCATCTCTCTGTGTTCTAAATCCAGATTCGT 282
Query 178 AT-GCTCTCATCTCTATTTCATTCAATTTCACT-CATCCAGATTCGACCA-TTACCTCTA 234
| ||| |||||||||||||||||| ||| || ||||||||||| | | ||||||||
Sbjct 283 TTCACTCCCATCTCTATTTCATTCAA-TTCGCTGCATCCAGATTC-AAAACCTACCTCTA 340
Query 235 TCTCTCTACTCATCAATCACTTCAAAGGTATTGTTCTTCTTCTTCAAACAAGTAAGAGTG 294
||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 341 TCTCTCTGCTCATCAATAACTTCAAAGGTATTGTTGTTCTTCTGCAAACAAGTAAGAGTG 400
Query 295 ACTTGAGAGTCTGATGATTCCTTGGGGTGGAGTTACTTGCTGCCTCAGCGCCGCCGCTCT 354
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 401 ACTTCAGAGTCTGATGATTCCTTGGGGTGGAGTTACTTGCTGCCTCAGCGCCGCTGCTCT 460
Query 355 TTATCTTCTCGGCCGGAGTAGTGGCAGGGATGCTGAAGTACTCAAAACTGTCACTAGGGT 414
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 461 TTATCTTCTCGGCCGGAGTAGTGGCAGGGATGCTGAAGTACTCGAAACAGTCACTAGGGT 520
Query 415 TAATCAGCTCAAGGAGTTAGCTCAATTGCTAGAATTAGATAGCAAGATTCTGCCTTTCAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TAATCAGCTCAAGGAGTTAGCTCAATTGCTAGAATTAGATAGCAAGATTCTGCCTTTCAT 580
Query 475 TGTTGCGGTATCAGGAAGAGTCGGCTCTGAGACACCTATCAAGTGTGAGCATAGTGGCAT 534
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 581 TGTTGCGGTATCAGGAAGAGTCGGCTCTGAGACACCTATCAAATGCGAGCATAGTGGCAT 640
Query 535 TCGCGGTGTTATTGTTGAAGAAACGGCTGAACAACATTTTCTGAAACATAATGAGACGGG 594
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 641 ACGCGGTGTTATTGTTGAAGAAACGGCGGAACAACATTTCCTGAAACATAATGAGACGGG 700
Query 595 TTCTTGGGTGCAAGATAGTGCATTGATGTTATCAATGAGCAAGGAGGTTCCTTGGTTTCT 654
||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 701 TTCTTGGGTACAAGATAGTGCGTTGATGCTATCAATGAGCAAAGAGGTTCCTTGGTTTCT 760
Query 655 GGACGATGGGACAAGTCGTGTCCATGTAATGGGAGCTCGTGGTGCCACTGGTTTTGCCTT 714
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 761 GGACGATGGGACAAGCCGTGTCCATGTAATGGGAGCTCGTGGTGCGACGGGTTTTGCCTT 820
Query 715 GACTGTTGGAAGTGAAGTATTTGAAGAGTCAGGGCGGTCGCTTGTACGAGGAACACTTGA 774
||||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 821 GACTGTTGGTAGTGAAGTTTTTGAAGAGTCAGGACGCTCGCTTGTACGAGGAACACTTGA 880
Query 775 TTATCTTCAAGGACTTAAGATGCTTGGAGTAAAGCGCATTGAGCGTGTTCTTCCAACTGG 834
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 881 TTATCTTCAAGGACTTAAGATGCTTGGAGTTAAGCGCATTGAGCGTGTTCTTCCAACTGG 940
Query 835 AATACCACTAACAATTGTTGGTGAGGCTGTCAAGGACGATATTGGCGAATTCAGGATTCA 894
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 941 AATACCGCTAACAATTGTTGGTGAGGCTGTCAAGGACGATATTGGAGAATTCAGGATTCA 1000
Query 895 AAAACCTGACAGGGGACCTTTCTACGTCTCTCCTAAATCACTCGATCAGCTCATTTCTAA 954
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1001 AAAACCTGACAGGGGCCCTTTCTACGTCTCTTCTAAATCACTCGATCAGCTCATTTCTAA 1060
Query 955 TTTGGGAAAATGGTCAAGGTGGTACAAATATGCCTCCATGGGTTTTACTGTTTTTGGTGT 1014
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1061 TTTGGGAAAATGGTCAAGGTTGTACAAATATGCCTCCATGGGTTTTACTGTTCTTGGTGT 1120
Query 1015 GTTCCTAATTACGAAGCATGTCATTGATTCTGTTCTAGAGAGAAGACGGCGGAGACAGTT 1074
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1121 GTTCCTAATTACGAAGCATGTCATTGACTCTGTTCTAGAGAGAAGACGGCGGAGACAGTT 1180
Query 1075 ACAAAAAAG----------AG--TGCTTGATGCAGCAGCAAAGAGAGCTGAGCTAGAGAG 1122
||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct 1181 ACAAAAAAGCTGTTTTTGCAGAGTGCTTGACGCAGCAGCAAAGAGAGCTGAGCTAGAGAG 1240
Query 1123 TGAAGGTTCAAACGGGGCACGTGAGAGCATTTCAGATTCTACCAAGAAAGAAGACGCTGT 1182
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 TGAAGGTTCAAACGGGACACGTGAGAGCATTTCAGATTCTACCAAGAAAGAAGACGCTGT 1300
Query 1183 TCCTGATCTCTGTGTGATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCCGTGTGG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 TCCTGATCTCTGTGTGATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCCGTGTGG 1360
Query 1243 TCATATGTGCTGCTGCACTGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGAG 1302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGAG 1420
Query 1303 ACGAATAGATCTGGCGGTTAAGACATATCGTCACTGAACAACAACTCAGGCTTCCGAAAC 1362
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1421 ACGAATAGATCTGGCGGTTAAGACATATCGTCACTGAACAACAACTCAGGCCTCAGAAAC 1480
Query 1363 ATTCTCTACTCGAGTCTTGTCTGTAAATACCGCAAGATGAAAACATTACA--GTTTAGGC 1420
|||||||||| |||||||||||||||||||||||| || ||||||||||| |||||| |
Sbjct 1481 ATTCTCTACTTGAGTCTTGTCTGTAAATACCGCAAAATCAAAACATTACACAGTTTAG-C 1539
Query 1421 GTTCAATCTCCCCTTTTGTTTGATTTCGAGAACAAAACATTTTGAATTATATAGAAACAT 1480
|||| || | |||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1540 GTTCGATATTCCCTTTGGTTTGATTTCGACAACAAAACATTTTGAATTATATAGAAACAT 1599
Query 1481 AAGGTGTTTACTCGATTTGCAGAACAGTACATTCGTGTTTACTTAACCGTGTCGCTGCTA 1540
||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||| |
Sbjct 1600 AAGGTGTTTACTCGATTTGCAAAACAGTACATTCGTGTTTACTTATTCGTGTTGTTGCCA 1659
Query 1541 ATGCCATGAGGTG 1553
|||||||||||||
Sbjct 1660 ATGCCATGAGGTG 1672
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 TGAGAATATTGAGAGAGATCGAAGCAAAGGATCATTCAAATCCAACACTCTGAATCTTTT 60
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 78 TGAGAATATTGAGAGAGATCGAAGCAAAGGATCATTCAATTCCAACCCTCTGAATCTTTT 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5