BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474973
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63820.1 | Symbols: | CCT motif family protein | chr1:23682... 1903 0.0
AT5G41380.1 | Symbols: | CCT motif family protein | chr5:16561... 97.1 4e-19
> AT1G63820.1 | Symbols: | CCT motif family protein | chr1:23682422-23684367
REVERSE LENGTH=1306
Length=1306
Score = 1903 bits (1030), Expect = 0.0
Identities = 1225/1313 (93%), Gaps = 37/1313 (3%)
Strand=Plus/Plus
Query 1 GTCATGTCTTGGTTCTgaaacaagaaactgtgaagaaaaaga-a-aga-gaaaaaaaaaa 57
|||||| ||||||||||||||||| ||||||||||||||||| | | | ||||||||||
Sbjct 1 GTCATGCCTTGGTTCTGAAACAAG-AACTGTGAAGAAAAAGAGAGAAACAAAAAAAAAAA 59
Query 58 tcacacttttttgggaaaaaggtccaaatttacattaagaaaaaaggttttttctttttg 117
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 TCACACTTTTTTGGGTAAAAGGTCCAAATTTACATTAAGAAAAAA-CAGTTTTCTTTTTG 118
Query 118 ccatttttGGATTCTGGTGGTTTTCaaaaaaaCAAAGATCACGAGTGTCACTTGTG-TTT 176
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 CCAATTTTGGATTCTGGTGGTTTTCAAAAAAACAAAGATCACGAGTGTCACTTGTGTTTT 178
Query 177 CTCTGTAACCGTTTCATTTGCTGAATTCAATTGCAGAGACAGAAGaaaaaaaGACAGAAC 236
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 179 CTCTGTAACCGTTTCATTTGCTCAATTCAATTGCAGAGACAG--TAAAAAAAGACAGAAC 236
Query 237 ATAA-CCCAAAAGATTCAATTGTTT-TGCTCTCTTCTTCTTC--T---ACTCCTTCA--- 286
|||| ||||||||||||| |||||| | |||||||||||||| | | | ||| |
Sbjct 237 ATAACCCCAAAAGATTCACTTGTTTAT-CTCTCTTCTTCTTCATTGAGAAT-CTTGAGTT 294
Query 287 T-TG-----AGAAT------CTTATGGATTCTGATCTTTATATCTTTGATGGGTCTTCTT 334
| || | ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 295 TGTGTTACCAAAATAAAAAGGGCATGGATTCTGATCTTTATATCTTTGATGGGTCTTCAT 354
Query 335 CTTCTTCCTCAATTTGCCACAGTACTGATCCTGATATGTTTTCTTCAGACACAACAACAA 394
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 355 CTTCTTCCTCAATCTGCCACAGTACTGATCCTGATATGTTTTCCTCCGACACAACAACAA 414
Query 395 CAACAGATCTCTTCTGCAACAATCCTTATCTCAATCCATT-AATGGATGATCATCAATCT 453
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 415 CAACAGATCTCTACTGCAACAATCCTTATCTCAATCC-TTCAATGGATGATCATCAATCT 473
Query 454 CTCAGTTTCTTTGAAAGTTTTACCCCAACGAGTCATCAtctcctctcttcttctccacca 513
|| |||||||||||||||||||| || |||| ||||||| |||||||||||||||| |||
Sbjct 474 CTTAGTTTCTTTGAAAGTTTTACTCCGACGACTCATCATATCCTCTCTTCTTCTCCTCCA 533
Query 514 atctctcagctccaaaccttaactctctctcACACAAACAGTTTCCCCAATTTCTCCGGT 573
|||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 534 ATCTCTCAGCTCCAGACCTTAACTCTCACACACACAAACAGTTTCCCCAACTTCTCCGGT 593
Query 574 TTCGAAAACTTCGACGCCGTCAAAACAGAGCAGCTCTTGTTTAATTCTCCCTTTGATGCT 633
||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||
Sbjct 594 TTCGAAAACTTCGACACTGTCAAAACAGAGCAGCTCTTGTTTAACTCTCCCTTTGATGCT 653
Query 634 CCAATCATGGAAGATTCCTCCAATTTCCAGAATCAGAATTTGTTAAACTCGCCGGAAGAT 693
||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 654 CCATTCATGGAAGATTCCTCGAATTTTCAGAATCAGAATTTGTTAAACTCGCCGGAAGAT 713
Query 694 TCCTTCTTCTCCTG-TCACATGCGACGAGTTTATAGCACCGGAGATTTGCAGAATTTAGG 752
|||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 714 TCCTTCTTCTCC-GATCACATGCGACGAGTTTACAGCACCGGAGATTTGCAGAATTTAGG 772
Query 753 AAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCATCAAC 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 773 AAGGGATTTTACGGGACAGAGATCATACTCGAGTCCTTTGGCGGCGGAGAGTTCACCAAC 832
Query 813 GACGGTGTTTTCCGGCGAAGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAACG 872
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GACGGTGTTTTCCGGCGATGAACAAAGCTTGAGGGTGGGGCGTTACAGTTCCGAAGAACG 892
Query 873 TAAAGAGAAGATTTCTAAGTATAGGGCTAAACGAACACAGAGAAACTTCACCAAAACCAT 932
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 893 TAAAGAGAAGATTTCTAAGTATAGAGCTAAACGAACACAGAGAAACTTCACCAAAACCAT 952
Query 933 TAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTGC 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TAAGTATGCATGCCGGAAAACGTTGGCGGACAACAGACCAAGAGTACGTGGCAGATTTGC 1012
Query 993 AAGAAACGACGAAGTTTTTGAGAACCCCAAGATTGCTTCTTCCTTCACTAGACAAGAAAA 1052
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 AAGAAACGACGAAGTGTTTGAGAACCCCAAGATTGCTTCTTCTTTCACTAGACAAGAAAA 1072
Query 1053 CGACGACGACCTTTGGAATTTGGATGGGTTGCATGAGGAAGAAGAAGCTTGTGTGGACTT 1112
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1073 CGACGACGACCTTTGGAATTTGGATGGGCTGCATGAGGAAGAAGAAGCTTGTGTGAACTT 1132
Query 1113 AGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCGTA 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1133 AGTGGAATGTCAGTCTCAGTCTCAGCCTCAGTTGCAAATGCAATACATGACAAATTCCTA 1192
Query 1173 CTGGTGAAATTAAAGTCTCTGTTTGAGAAGGAAGAGATTAATATTTTTCCCATTTAGTTT 1232
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1193 CTGGTGAAATTAAAGCCTCTGTTTGAGAAGGAAGAGATGAATATTTTTCCCATTTAGTTT 1252
Query 1233 TAATATGCAGACGAATCGAATCAAATCATATTATATTAGCAATGCATTGTAGT 1285
||||||||||||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct 1253 TAATATGCAGACGAATCGAATTAAATCATAT-ATATTAGCAATGTATTGTAGT 1304
> AT5G41380.1 | Symbols: | CCT motif family protein | chr5:16561278-16563732
REVERSE LENGTH=1954
Length=1954
Score = 97.1 bits (52), Expect = 4e-19
Identities = 93/111 (84%), Gaps = 9/111 (8%)
Strand=Plus/Plus
Query 313 TATATCTTTGATGG---GTCTTCTTCTTCTTCCTCAAT-TTGCCA-CAGTACTGA-TCCT 366
|||||||||||||| |||||| |||||||||||| | || || | | | || |||
Sbjct 201 TATATCTTTGATGGTTCGTCTTCATCTTCTTCCTCAGTGTT--CAGAAATTC-GAGTCCA 257
Query 367 GATATGTTTTCTTCAGACACAACAACAACAACAGATCTCTTCTGCAACAAT 417
||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 258 GATATGTTTTCTTCAGACACAACAACAACTACAGATTTGTTCTGCAACAAT 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5