BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474975
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63800.1 | Symbols: UBC5 | ubiquitin-conjugating enzyme 5 | ... 1205 0.0
AT5G41340.1 | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enz... 579 2e-164
> AT1G63800.1 | Symbols: UBC5 | ubiquitin-conjugating enzyme 5
| chr1:23667616-23669080 REVERSE LENGTH=907
Length=907
Score = 1205 bits (652), Expect = 0.0
Identities = 741/781 (95%), Gaps = 17/781 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaaTCAGCAAAAAAGAAGAAGAGAGAAACCATGTCTTCGCCGAGCAAGCG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 AAAAAAAAAAAAATCAGAAAAAAAGAAGAAGAGAGAAACCATGTCTTCGCCGAGCAAGCG 97
Query 61 TAGAGAAATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTTGAGATGATCAATGA 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 98 TAGAGAAATGGATTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGA 157
Query 121 TGGCATGCAAGAGTTCTTTGTTGAATTCAATGGACCTAAAGACAGTATATATGAGGGAGG 180
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 158 TGGCATGCAAGAGTTCTTTGTCGAATTCAGTGGACCCAAAGACAGTATATATGAGGGAGG 217
Query 181 TGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 TGTGTGGAAGATAAGAGTTGAACTTCCTGATGCTTATCCTTATAAATCTCCATCTGTTGG 277
Query 241 TTTCATTACCAAAATATACCACCCGAATGTCGATGAAATGTCCGGTTCTGTGTGTTTAGA 300
|||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||
Sbjct 278 TTTCATTACCAAAATATACCACCCTAATGTCGATGAAATGTCAGGTTCTGTTTGTCTAGA 337
Query 301 TGTTATTAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTTGAGACATTTCT 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 338 TGTTATTAACCAGACCTGGAGCCCGATGTTCGACCTGGTGAATGTGTTCGAGACATTTCT 397
Query 361 TCCTCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGAGAAGCAGCTGCATT 420
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 398 TCCGCAACTTCTTCTGTATCCGAATCCGTCAGATCCATTGAATGGTGAAGCAGCTGCATT 457
Query 421 GATGATGCGTGATCGTCCTACCTATGAACAGAGAGTTAAAGAGTATTGCGAGAAATACGC 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 458 GATGATGCGTGATCGTCCTACCTATGAACAGAGAGTTAAAGAGTATTGTGAGAAATACGC 517
Query 481 AAAGCCAAGGGAGGATACTGAGGAAATGTCTAGTGATGATGAAATGAGTGAAGACGAATA 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 518 AAAGCCAAGGGCGGATACTGAGGAAATGTCTAGTGATGATGAAATGAGTGAAGATGAATA 577
Query 541 TGCCTCAGACGGTGATGATGAAGATGATGTTGCAATCGCAGGTAAACTTGATCCTTAATC 600
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 578 TGCCTCGGATGGTGATGATGAAGATGATGTTGCAATCGCCGGTAAACTTGATCCTTAATC 637
Query 601 C-GCATTGGTCTTGGTATGAATCATGTGGCTGGCTTAAT-G--G-CTAAACCGGGG-TGA 654
| |||||||||||| |||||||||||| ||||||||||| | | ||||||||||| |||
Sbjct 638 CCGCATTGGTCTTGATATGAATCATGTAGCTGGCTTAATAGATGGCTAAACCGGGGATGA 697
Query 655 CAAAAAGAAGCTGGTGACTTTGTAC--AT-ATGTATAT--GAATAATCAATGAATGTTTA 709
|||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 698 CAAAAAGAAGCTGGTGACTTTGTATGTATCATGTATATATGAATAATCAATGAATGTTTA 757
Query 710 AAG-TTCCA-TCTTTAAATTGAACTGTAAAATCTCTCTCATTCTCTTGTTGTTTACTTTG 767
||| ||||| | ||||| |||||||||||||||||| | |||||||||||||||| |||
Sbjct 758 AAGGTTCCAGT-TTTAA-TTGAACTGTAAAATCTCTAT--TTCTCTTGTTGTTTACGTTG 813
Query 768 T 768
|
Sbjct 814 T 814
> AT5G41340.1 | Symbols: UBC4, ATUBC4 | ubiquitin conjugating enzyme
4 | chr5:16538081-16540130 REVERSE LENGTH=953
Length=953
Score = 579 bits (313), Expect = 2e-164
Identities = 501/591 (85%), Gaps = 15/591 (3%)
Strand=Plus/Plus
Query 30 AGAGAGAAACCATGTCTTCGCCGAGCAAGCGTAGAGAAATGGATTTGATGAAACTGATGA 89
||||| ||| ||||||||||| ||||| || |||||||||||| ||||||| |||||||
Sbjct 164 AGAGAAAAAAAATGTCTTCGCCAAGCAAACGCAGAGAAATGGATATGATGAAGCTGATGA 223
Query 90 TGAGTGACTACAAGGTTGAGATGATCAATGATGGCATGCAAGAGTTCTTTGTTGAATTCA 149
|||| || || || || || | |||||| |||||||||||||| |||| |||||||||||
Sbjct 224 TGAGCGATTATAAAGTGGAAACGATCAACGATGGCATGCAAGAATTCTATGTTGAATTCA 283
Query 150 ATGGACCTAAAGACAGTATATATGAGGGAGGTGTGTGGAAGATAAGAGTTGAACTTCCTG 209
|||| || ||||||||| | ||| | |||||||||||||||||||||||||| ||||| |
Sbjct 284 ATGGTCCCAAAGACAGTCTCTATCAAGGAGGTGTGTGGAAGATAAGAGTTGAGCTTCCAG 343
Query 210 ATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACCAAAATATACCACCCGAATG 269
|||||||||||||||||||||||||||||||||||||||| ||||| || || || ||||
Sbjct 344 ATGCTTATCCTTATAAATCTCCATCTGTTGGTTTCATTACTAAAATTTATCATCCTAATG 403
Query 270 TCGATGAAATGTCCGGTTCTGTGTGTTTAGATGTTATTAACCAGACCTGGAGCCCGATGT 329
| |||||| |||| |||||||| ||||||||||| |||||||| || ||||| || ||||
Sbjct 404 TTGATGAACTGTCGGGTTCTGTTTGTTTAGATGTGATTAACCAAACTTGGAGTCCTATGT 463
Query 330 TCGACCTGGTGAATGTGTTTGAGACATTTCTTCCTCAACTTCTTCTGTATCCGAATCCGT 389
||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || |
Sbjct 464 TCGACCTTGTGAATGTGTTTGAGACATTTCTTCCTCAGCTTCTTCTGTATCCAAACCCAT 523
Query 390 CAGATCCATTGAATGGAGAAGCAGCTGCATTGATGATGCGTGATCGTCCTACCTATGAAC 449
|||||||||||||||||||||| ||||| || |||||||||||||||||| | ||||| |
Sbjct 524 CAGATCCATTGAATGGAGAAGCTGCTGCGTTAATGATGCGTGATCGTCCTGCTTATGAGC 583
Query 450 AGA-GAGTTAAAGAGTATTGCGAGAAATACGCAAAGCCAAGGGA-GGATACTGAGGA-AA 506
| | |||||||||| || || ||||| || ||||||||| |||| || | | || || ||
Sbjct 584 A-ACGAGTTAAAGAATACTGTGAGAAGTATGCAAAGCCAGGGGAAGGTT-CAGAAGATAA 641
Query 507 TGTCTAGTGATGATGAAATGAGTGAAGACGAATATGCCTCAGAC---G-G--TGATGATG 560
|||||| ||||| ||| | |||||||| ||||| | |||||| | | ||||||||
Sbjct 642 -GTCTAGCGATGAAGAACTAAGTGAAGAGGAATACGGCTCAGATAATGAGGATGATGATG 700
Query 561 AAGATGATGTTGCAATCGCAGGTAAACTTGATCCTT-AATCC-GCATTGGT 609
| |||||||||||||| || || |||| ||||||| || || || |||||
Sbjct 701 ATGATGATGTTGCAATTGCTGGCAAACCAGATCCTTGAA-CCAGCTTTGGT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37323971221
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5